Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p30480 Brassica napus HOM05D003098 ORTHO05D003634 5.9e-68 260.8 135 100.0
BolC6t38210H Brassica oleracea HOM05D003098 ORTHO05D003634 9.5e-66 253.4 134 98.5
BcaC08g45416 Brassica carinata HOM05D003098 ORTHO05D003634 2.0e-47 192.6 145 79.3
A07p27540 Brassica napus HOM05D003098 ORTHO05D003634 3.9e-35 151.8 131 66.4
BraA07t30396Z Brassica rapa HOM05D003098 ORTHO05D003634 4.9e-30 134.8 79 84.8
Sp5g33520 Schrenkiella parvula HOM05D003098 ORTHO05D003634 1.3e-25 120.2 76 82.9
Thhalv10018644m.g Eutrema salsugineum HOM05D003098 ORTHO05D003634 2.8e-25 119.0 76 81.6
BcaB03g16017 Brassica carinata HOM05D003098 ORTHO05D003634 3.6e-25 118.6 76 81.6
BcaB05g25139 Brassica carinata HOM05D003098 ORTHO05D003634 4.8e-25 118.2 76 81.6
AL2G38790 Arabidopsis lyrata HOM05D003098 ORTHO05D003634 6.2e-25 117.9 87 73.6
BcaC03g15812 Brassica carinata HOM05D003098 ORTHO05D003634 1.8e-24 116.3 76 80.3
C02p35590 Brassica napus HOM05D003098 ORTHO05D003634 1.8e-24 116.3 76 80.3
BolC2t09574H Brassica oleracea HOM05D003098 ORTHO05D003634 1.8e-24 116.3 76 80.3
Carub.0002s2532 Capsella rubella HOM05D003098 ORTHO05D003634 2.4e-24 115.9 87 72.4
AT1G78420 Arabidopsis thaliana HOM05D003098 ORTHO05D003634 3.1e-24 115.5 87 72.4
CARHR071940 Cardamine hirsuta HOM05D003098 ORTHO05D003634 5.3e-24 114.8 87 71.3
A02p22180 Brassica napus HOM05D003098 ORTHO05D003634 6.9e-24 114.4 76 78.9
BolC6t40256H Brassica oleracea HOM05D003098 ORTHO05D003634 6.9e-24 114.4 77 80.5
BraA02t07222Z Brassica rapa HOM05D003098 ORTHO05D003634 6.9e-24 114.4 76 78.9
Aa31LG4G2540 Aethionema arabicum HOM05D003098 ORTHO05D003634 2.6e-23 112.5 76 76.3
A07p43680 Brassica napus HOM05D003098 ORTHO05D003634 4.5e-23 111.7 77 77.9
BraA07t31880Z Brassica rapa HOM05D003098 ORTHO05D003634 4.5e-23 111.7 77 77.9
THA.LOC104812290 Tarenaya hassleriana HOM05D003098 ORTHO05D003634 6.4e-22 107.8 90 64.4
Cpa.g.sc77.97 Carica papaya HOM05D003098 ORTHO05D003634 1.9e-21 106.3 84 64.3
THA.LOC104808077 Tarenaya hassleriana HOM05D003098 ORTHO05D003634 1.9e-21 106.3 98 61.2
BcaC08g47416 Brassica carinata HOM05D003098 ORTHO05D003634 3.2e-21 105.5 77 75.3
C06p52360 Brassica napus HOM05D003098 ORTHO05D003634 3.2e-21 105.5 77 75.3
Nitab4.5_0005080g0040 Nicotiana tabacum HOM05D003098 ORTHO05D003634 3.2e-21 105.5 89 66.3
Sopen07g029980 Solanum pennellii HOM05D003098 ORTHO05D003634 9.3e-21 104.0 87 65.5
CAN.G1003.6 Capsicum annuum HOM05D003098 ORTHO05D003634 1.6e-20 103.2 87 65.5
THA.LOC104813978 Tarenaya hassleriana HOM05D003098 ORTHO05D003634 1.6e-20 103.2 87 65.5
Solyc07g056630.3 Solanum lycopersicum HOM05D003098 ORTHO05D003634 2.1e-20 102.8 87 64.4
Sopen07g030020 Solanum pennellii HOM05D003098 ORTHO05D003634 2.7e-20 102.4 87 64.4
Haze_08492 Corylus avellana HOM05D003098 ORTHO05D003634 3.5e-20 102.1 109 54.1
PGR031G0814 Punica granatum HOM05D003098 ORTHO05D003634 4.6e-20 101.7 82 67.1
DCAR_021056 Daucus carota HOM05D003098 ORTHO05D003634 1.0e-19 100.5 81 66.7
arahy.Tifrunner.gnm1.ann1.A6UZA5 Arachis hypogaea HOM05D003098 ORTHO05D003634 3.9e-19 98.6 75 64.0
Manes.15G101000 Manihot esculenta HOM05D003098 ORTHO05D003634 3.9e-19 98.6 88 63.6
Gohir.A04G046600 Gossypium hirsutum HOM05D003098 ORTHO05D003634 5.1e-19 98.2 76 68.4
GSVIVG01038087001 Vitis vinifera HOM05D003098 ORTHO05D003634 6.7e-19 97.8 86 61.6
Potri.011G096000 Populus trichocarpa HOM05D003098 ORTHO05D003634 8.7e-19 97.4 82 64.6
arahy.Tifrunner.gnm1.ann1.PZE2NF Arachis hypogaea HOM05D003098 ORTHO05D003634 1.1e-18 97.1 87 57.5
Dinv26666 Davidia involucrata HOM05D003098 ORTHO05D003634 1.1e-18 97.1 77 67.5
MBI07_g23222_MAGBIO Magnolia biondii HOM05D003098 ORTHO05D003634 1.1e-18 97.1 71 71.8
ClCG07G010480 Citrullus lanatus HOM05D003098 ORTHO05D003634 1.5e-18 96.7 88 58.0
TWI38G0376 Tripterygium wilfordii HOM05D003098 ORTHO05D003634 1.5e-18 96.7 80 63.8
TWI38G1646 Tripterygium wilfordii HOM05D003098 ORTHO05D003634 1.5e-18 96.7 80 63.8
Atru.chr2.1895 Acer truncatum HOM05D003098 ORTHO05D003634 2.5e-18 95.9 89 59.6
Sed0018273 Sechium edule HOM05D003098 ORTHO05D003634 2.5e-18 95.9 112 50.0
Gohir.D05G335700 Gossypium hirsutum HOM05D003098 ORTHO05D003634 3.3e-18 95.5 76 65.8
Dinv13310 Davidia involucrata HOM05D003098 ORTHO05D003634 4.3e-18 95.1 77 67.5
Potri.001G378000 Populus trichocarpa HOM05D003098 ORTHO05D003634 4.3e-18 95.1 87 58.6
Cc05_g10240 Coffea canephora HOM05D003098 ORTHO05D003634 7.4e-18 94.4 87 62.1
Sabra11G0089500 Salix brachista HOM05D003098 ORTHO05D003634 7.4e-18 94.4 71 67.6
ATR0730G170 Amborella trichopoda HOM05D003098 ORTHO05D003634 1.3e-17 93.6 62 72.6
CSS0045430 Camellia sinensis var. sinensis HOM05D003098 ORTHO05D003634 1.3e-17 93.6 70 71.4
Duzib268G0819 Durio zibethinus HOM05D003098 ORTHO05D003634 1.3e-17 93.6 83 65.1
Glyma.13G259100 Glycine max HOM05D003098 ORTHO05D003634 1.3e-17 93.6 74 62.2
CARHR017700 Cardamine hirsuta HOM05D003098 ORTHO05D003634 1.6e-17 93.2 77 64.9
Gohir.A01G041800 Gossypium hirsutum HOM05D003098 ORTHO05D003634 1.6e-17 93.2 85 61.2
Nitab4.5_0002495g0020 Nicotiana tabacum HOM05D003098 ORTHO05D003634 1.6e-17 93.2 87 60.9
TAR627G0095 Trochodendron aralioides HOM05D003098 ORTHO05D003634 1.6e-17 93.2 76 65.8
Eucgr.F03204 Eucalyptus grandis HOM05D003098 ORTHO05D003634 2.1e-17 92.8 81 63.0
Psat1g001120 Pisum sativum HOM05D003098 ORTHO05D003634 2.1e-17 92.8 71 63.4
Rhsim06G0184800 Rhododendron simsii HOM05D003098 ORTHO05D003634 2.1e-17 92.8 92 57.6
Sabra16G0249000 Salix brachista HOM05D003098 ORTHO05D003634 2.1e-17 92.8 87 57.5
Sed0021570 Sechium edule HOM05D003098 ORTHO05D003634 2.1e-17 92.8 110 49.1
Duzib213G0182 Durio zibethinus HOM05D003098 ORTHO05D003634 2.8e-17 92.4 83 65.1
Gohir.A13G152100 Gossypium hirsutum HOM05D003098 ORTHO05D003634 2.8e-17 92.4 81 60.5
Gohir.D01G029400 Gossypium hirsutum HOM05D003098 ORTHO05D003634 2.8e-17 92.4 85 61.2
Gorai.002G038700 Gossypium raimondii HOM05D003098 ORTHO05D003634 2.8e-17 92.4 85 61.2
Hma1.2p1_1456F.1_g284580 Hydrangea macrophylla HOM05D003098 ORTHO05D003634 2.8e-17 92.4 84 61.9
Phvul.005G060550 Phaseolus vulgaris HOM05D003098 ORTHO05D003634 3.6e-17 92.0 83 57.8
Ca_03391_v3 Cicer arietinum L. HOM05D003098 ORTHO05D003634 4.8e-17 91.7 74 60.8
Gohir.D13G156400 Gossypium hirsutum HOM05D003098 ORTHO05D003634 4.8e-17 91.7 77 62.3
Gorai.013G177000 Gossypium raimondii HOM05D003098 ORTHO05D003634 4.8e-17 91.7 77 62.3
Medtr2g070630 Medicago truncatula HOM05D003098 ORTHO05D003634 4.8e-17 91.7 85 57.6
TPR.G26632 Trifolium pratense HOM05D003098 ORTHO05D003634 4.8e-17 91.7 84 57.1
Lj1C810T1 Lonicera japonica HOM05D003098 ORTHO05D003634 6.2e-17 91.3 84 60.7
SGA_v2.0_scaffold73G24350 Striga asiatica HOM05D003098 ORTHO05D003634 6.2e-17 91.3 84 63.1
Lj3g0011437 Lotus japonicus HOM05D003098 ORTHO05D003634 8.1e-17 90.9 74 62.2
Oeu009883.1 Olea europaea HOM05D003098 ORTHO05D003634 8.1e-17 90.9 86 58.1
CSS0003040 Camellia sinensis var. sinensis HOM05D003098 ORTHO05D003634 1.1e-16 90.5 69 71.0
Oeu020368.1 Olea europaea HOM05D003098 ORTHO05D003634 1.1e-16 90.5 86 58.1
Peaxi162Scf00111g00826 Petunia axillaris HOM05D003098 ORTHO05D003634 1.1e-16 90.5 87 59.8
SalBow8G0445 Salvia bowleyana HOM05D003098 ORTHO05D003634 1.1e-16 90.5 83 65.1
MSTRG.15009 Avicennia marina HOM05D003098 ORTHO05D003634 1.4e-16 90.1 84 63.1
Ciclev10020251m.g Citrus clementina HOM05D003098 ORTHO05D003634 1.4e-16 90.1 82 63.4
Nn3g20785 Nelumbo nucifera HOM05D003098 ORTHO05D003634 1.4e-16 90.1 71 66.2
BcaB07g34048 Brassica carinata HOM05D003098 ORTHO05D003634 3.1e-16 89.0 159 40.3
Duzib187G1141 Durio zibethinus HOM05D003098 ORTHO05D003634 4.0e-16 88.6 88 58.0
MBI10_g30422_MAGBIO Magnolia biondii HOM05D003098 ORTHO05D003634 4.0e-16 88.6 71 64.8
SalBow1G2154 Salvia bowleyana HOM05D003098 ORTHO05D003634 4.0e-16 88.6 82 64.6
SalBow1G5329 Salvia bowleyana HOM05D003098 ORTHO05D003634 4.0e-16 88.6 82 64.6
SalBow6G5382 Salvia bowleyana HOM05D003098 ORTHO05D003634 4.0e-16 88.6 82 64.6
SalBow8G0143 Salvia bowleyana HOM05D003098 ORTHO05D003634 4.0e-16 88.6 82 64.6
A06p13040 Brassica napus HOM05D003098 ORTHO05D003634 5.3e-16 88.2 90 54.4
BraA06t24463Z Brassica rapa HOM05D003098 ORTHO05D003634 5.3e-16 88.2 90 54.4
MD10G1195000 Malus domestica HOM05D003098 ORTHO05D003634 5.3e-16 88.2 82 59.8
vmacro12016 Vaccinium macrocarpon HOM05D003098 ORTHO05D003634 5.3e-16 88.2 86 58.1
Oeu001299.2 Olea europaea HOM05D003098 ORTHO05D003634 6.9e-16 87.8 91 52.7
SHI32898 Sapria himalayana HOM05D000344 ORTHO05D005714 6.9e-16 87.8 62 69.4
Actinidia04592 Actinidia chinensis HOM05D003098 ORTHO05D003634 9.0e-16 87.4 77 62.3
CsaV3_4G007810 Cucumis sativus L. HOM05D003098 ORTHO05D003634 9.0e-16 87.4 110 46.4
DCAR_013797 Daucus carota HOM05D003098 ORTHO05D003634 9.0e-16 87.4 86 55.8
unitig_62.g23089 Utricularia gibba HOM05D003098 ORTHO05D003634 9.0e-16 87.4 86 59.3
Actinidia12840 Actinidia chinensis HOM05D003098 ORTHO05D003634 1.2e-15 87.0 86 58.1
Aqoxy1G01700 Aquilegia oxysepala HOM05D003098 ORTHO05D003634 1.2e-15 87.0 69 63.8
CANSAT94G0015 Cannabis sativa HOM05D003098 ORTHO05D003634 1.2e-15 87.0 86 55.8
HanXRQChr10g0305971 Helianthus annuus HOM05D003098 ORTHO05D003634 1.2e-15 87.0 62 71.0
HanXRQChr10g0305981 Helianthus annuus HOM05D003098 ORTHO05D003634 1.2e-15 87.0 62 71.0
Lalb_Chr01g0016081 Lupinus albus HOM05D003098 ORTHO05D003634 1.2e-15 87.0 111 46.8
COL.COLO4_17417 Corchorus olitorius HOM05D003098 ORTHO05D003634 1.5e-15 86.7 96 56.2
FAN11G1214 Fragaria x ananassa HOM05D003098 ORTHO05D003634 1.5e-15 86.7 84 58.3
SGA_v2.0_scaffold181G39782 Striga asiatica HOM05D003098 ORTHO05D003634 1.5e-15 86.7 92 56.5
Migut.M00650 Erythranthe guttata HOM05D003098 ORTHO05D003634 2.0e-15 86.3 83 59.0
HanXRQChr11g0330331 Helianthus annuus HOM05D003098 ORTHO05D003634 2.0e-15 86.3 95 57.9
MD05G1208500 Malus domestica HOM05D003098 ORTHO05D003634 2.0e-15 86.3 86 58.1
Actinidia35176 Actinidia chinensis HOM05D003098 ORTHO05D003634 2.6e-15 85.9 69 65.2
MELO3C016154.2 Cucumis melo HOM05D003098 ORTHO05D003634 2.6e-15 85.9 90 53.3
ECA234G0652 Erigeron canadensis HOM05D003098 ORTHO05D003634 3.4e-15 85.5 90 55.6
Os02g0244100 Oryza sativa ssp. japonica HOM05D003098 ORTHO05D003634 3.4e-15 85.5 62 66.1
Hma1.2p1_0325F.1_g125950 Hydrangea macrophylla HOM05D003098 ORTHO05D003634 4.5e-15 85.1 94 56.4
TAR629G0752 Trochodendron aralioides HOM05D003098 ORTHO05D003634 4.5e-15 85.1 87 57.5
MSTRG.6711 Avicennia marina HOM05D003098 ORTHO05D003634 5.8e-15 84.7 83 56.6
CiPaw.11G068300 Carya illinoinensis HOM05D003098 ORTHO05D003634 5.8e-15 84.7 110 48.2
FAN25G3533 Fragaria x ananassa HOM05D003098 ORTHO05D003634 5.8e-15 84.7 84 57.1
Thecc.07G146500 Theobroma cacao HOM05D003098 ORTHO05D003634 7.6e-15 84.3 83 60.2
AagrBONN_evm.TU.Sc2ySwM_228.3688 Anthoceros agrestis HOM05D003098 ORTHO05D003634 1.3e-14 83.6 86 54.7
RcHm_v2.0_Chr5g0027751 Rosa chinensis HOM05D003098 ORTHO05D003634 1.3e-14 83.6 86 55.8
Zm00001eb238650 Zea mays HOM05D003098 ORTHO05D003634 1.3e-14 83.6 97 51.5
Glyma.15G249000 Glycine max HOM05D003098 ORTHO05D003634 1.7e-14 83.2 56 69.6
Nn4g26567 Nelumbo nucifera HOM05D003098 ORTHO05D003634 1.7e-14 83.2 77 61.0
BolC5t30262H Brassica oleracea HOM05D003098 ORTHO05D003634 2.2e-14 82.8 95 54.7
Prupe.4G148900 Prunus persica HOM05D003098 ORTHO05D003634 2.2e-14 82.8 86 54.7
CSS0026372 Camellia sinensis var. sinensis HOM05D003098 ORTHO05D003634 2.9e-14 82.4 96 54.2
AT1G17145 Arabidopsis thaliana HOM05D003098 ORTHO05D003634 3.8e-14 82.0 57 70.2
FAN16G2875 Fragaria x ananassa HOM05D003098 ORTHO05D003634 3.8e-14 82.0 80 57.5
Oeu058426.1 Olea europaea HOM05D003098 ORTHO05D003634 3.8e-14 82.0 83 56.6
AL1G29360 Arabidopsis lyrata HOM05D003098 ORTHO05D003634 4.9e-14 81.6 58 69.0
BcaC05g25664 Brassica carinata HOM05D003098 ORTHO05D003634 4.9e-14 81.6 86 58.1
FAN21G2223 Fragaria x ananassa HOM05D003098 ORTHO05D003634 4.9e-14 81.6 80 57.5
PSO541G6535 Papaver somniferum HOM05D003098 ORTHO05D003634 6.4e-14 81.3 86 53.5
Zm00001eb204560 Zea mays HOM05D003098 ORTHO05D003634 6.4e-14 81.3 97 50.5
Actinidia18845 Actinidia chinensis HOM05D003098 ORTHO05D003634 8.4e-14 80.9 86 57.0
ECA236G5036 Erigeron canadensis HOM05D003098 ORTHO05D003634 8.4e-14 80.9 83 59.0
FvH4_3g16610 Fragaria vesca HOM05D003098 ORTHO05D003634 8.4e-14 80.9 80 57.5
Os06g0154900 Oryza sativa ssp. japonica HOM05D003098 ORTHO05D003634 8.4e-14 80.9 86 50.0
Gorai.009G359400 Gossypium raimondii HOM05D003098 ORTHO05D003634 1.1e-13 80.5 47 83.0
QL04p070292 Quercus lobata HOM05D003098 ORTHO05D003634 1.1e-13 80.5 110 47.3
Pp3c10_22920 Physcomitrium patens HOM05D003098 ORTHO05D003634 2.4e-13 79.3 58 67.2
SEGI_26890 Sequoiadendron giganteum HOM05D003098 ORTHO05D003634 3.2e-13 79.0 82 52.4
Ah.04g163840 Amaranthus hybridus HOM05D003098 ORTHO05D003634 4.2e-13 78.6 92 47.8
Lsat_1_v5_gn_5_119821 Lactuca sativa HOM05D003098 ORTHO05D003634 4.2e-13 78.6 62 66.1
Lalb_Chr25g0285391 Lupinus albus HOM05D003098 ORTHO05D003634 4.2e-13 78.6 83 51.8
Zm00001eb271050 Zea mays HOM05D003098 ORTHO05D003634 4.2e-13 78.6 85 51.8
Pp3c3_24920 Physcomitrium patens HOM05D003098 ORTHO05D003634 5.5e-13 78.2 58 67.2
Nn8g40230 Nelumbo nucifera HOM05D003098 ORTHO05D003634 7.1e-13 77.8 77 54.5
Zm00001eb376630 Zea mays HOM05D003098 ORTHO05D003634 7.1e-13 77.8 85 49.4
TAR626G1321 Trochodendron aralioides HOM05D003098 ORTHO05D003634 9.3e-13 77.4 90 54.4
C05p15520 Brassica napus HOM05D003098 ORTHO05D003634 2.7e-12 75.9 165 37.6
PSO675G2036 Papaver somniferum HOM05D003098 ORTHO05D003634 3.5e-12 75.5 86 51.2
Nn2g12562 Nelumbo nucifera HOM05D003098 ORTHO05D003634 6.0e-12 74.7 92 45.7
Pp3c3_28300 Physcomitrium patens HOM05D003098 ORTHO05D003634 6.0e-12 74.7 64 59.4
CDE10G0611 Ceratophyllum demersum HOM05D003098 ORTHO05D003634 7.9e-12 74.3 62 61.3
CDE10G1008 Ceratophyllum demersum HOM05D003098 ORTHO05D003634 1.0e-11 73.9 66 56.1
Lalb_Chr03g0031451 Lupinus albus HOM05D003098 ORTHO05D003634 1.0e-11 73.9 83 51.8
SMO364G0643 Selaginella moellendorffii HOM05D003098 ORTHO05D003634 1.3e-11 73.6 59 64.4
AUR62037970 Chenopodium quinoa HOM05D003098 ORTHO05D003634 2.3e-11 72.8 92 44.6
HPP92_009664 Vanilla planifolia HOM05D003098 ORTHO05D003634 2.3e-11 72.8 57 61.4
Thhalv10008156m.g Eutrema salsugineum HOM05D003098 ORTHO05D003634 5.1e-11 71.6 44 77.3
Aqoxy7G03253 Aquilegia oxysepala HOM05D003098 ORTHO05D003634 1.1e-10 70.5 50 66.0
AUR62041781 Chenopodium quinoa HOM05D003098 ORTHO05D003634 1.1e-10 70.5 93 49.5
ATR0580G062 Amborella trichopoda HOM05D003098 ORTHO05D003634 3.3e-10 68.9 116 41.4
Sp1g15270 Schrenkiella parvula HOM05D003098 ORTHO05D003634 1.3e-09 67.0 96 46.9
EL10Ac4g08489 Beta vulgaris HOM05D003098 ORTHO05D003634 6.2e-09 64.7 94 43.6
TAR383G0043 Trochodendron aralioides HOM05D003098 ORTHO05D003634 8.2e-09 64.3 48 64.6
CDE02G0504 Ceratophyllum demersum HOM05D003098 ORTHO05D003634 1.1e-08 63.9 46 65.2
CDE05G1295 Ceratophyllum demersum HOM05D003098 ORTHO05D003634 1.1e-08 63.9 51 58.8
CBR_g77957 Chara braunii HOM05D003098 ORTHO05D003634 3.1e-08 62.4 39 69.2
PSO063G3789 Papaver somniferum HOM05D003098 ORTHO05D003634 5.3e-08 61.6 76 48.7
PSO782G3246 Papaver somniferum HOM05D003098 ORTHO05D003634 9.0e-08 60.8 72 47.2
Oeu050692.2 Olea europaea HOM05D003098 ORTHO05D003634 4.5e-07 58.5 70 54.3
MBI15_g07476_MAGBIO Magnolia biondii HOM05D003098 ORTHO05D003634 5.8e-07 58.2 84 42.9
CBR_g5621 Chara braunii HOM05D003098 ORTHO05D003634 1.0e-06 57.4 38 68.4


User provided reference genes

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