Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p10410 Brassica napus HOM05D005410 ORTHO05D040422 3.0e-60 235.0 116 100.0
BolC6t36118H Brassica oleracea HOM05D005410 ORTHO05D040422 1.5e-59 232.6 116 99.1
Thhalv10011629m.g Eutrema salsugineum HOM05D005410 ORTHO05D007394 3.8e-23 111.7 77 79.2
Sp1g41090 Schrenkiella parvula HOM05D005410 ORTHO05D007394 2.5e-22 109.0 77 77.9
BcaC08g44199 Brassica carinata HOM05D005410 ORTHO05D007394 3.2e-22 108.6 77 77.9
A05p17460 Brassica napus HOM05D005410 ORTHO05D007394 3.2e-22 108.6 77 77.9
C06p16070 Brassica napus HOM05D005410 ORTHO05D007394 3.2e-22 108.6 77 77.9
BolC6t36806H Brassica oleracea HOM05D005410 ORTHO05D007394 3.2e-22 108.6 77 77.9
BraA05t20641Z Brassica rapa HOM05D005410 ORTHO05D007394 3.2e-22 108.6 77 77.9
AL1G63500 Arabidopsis lyrata HOM05D005410 ORTHO05D007394 4.2e-22 108.2 77 75.3
Carub.0001s4397 Capsella rubella HOM05D005410 ORTHO05D007394 4.2e-22 108.2 77 75.3
BcaB02g10821 Brassica carinata HOM05D005410 ORTHO05D007394 5.5e-22 107.8 77 75.3
CARHR045150 Cardamine hirsuta HOM05D005410 ORTHO05D007394 7.2e-22 107.5 77 75.3
AT1G55480 Arabidopsis thaliana HOM05D005410 ORTHO05D007394 6.1e-21 104.4 77 72.7
Aa31LG10G770 Aethionema arabicum HOM05D005410 ORTHO05D007394 2.3e-20 102.4 77 71.4
THA.LOC104810318 Tarenaya hassleriana HOM05D005410 ORTHO05D007394 3.0e-20 102.1 76 71.1
Ciclev10015873m.g Citrus clementina HOM05D005410 ORTHO05D007394 2.6e-19 99.0 80 62.5
DCAR_023818 Daucus carota HOM05D005410 ORTHO05D007394 5.7e-19 97.8 77 67.5
MD03G1003100 Malus domestica HOM05D005410 ORTHO05D007394 1.7e-18 96.3 77 64.9
Ciclev10018072m.g Citrus clementina HOM05D005410 ORTHO05D007394 2.2e-18 95.9 77 63.6
SGA_v2.0_scaffold6G03314 Striga asiatica HOM05D005410 ORTHO05D007394 2.2e-18 95.9 77 63.6
Atru.chr3.2102 Acer truncatum HOM05D005410 ORTHO05D007394 2.8e-18 95.5 77 67.5
Atru.chr3.2395 Acer truncatum HOM05D005410 ORTHO05D007394 2.8e-18 95.5 77 67.5
Dinv13479 Davidia involucrata HOM05D005410 ORTHO05D007394 2.8e-18 95.5 77 64.9
CSS0020515 Camellia sinensis var. sinensis HOM05D005410 ORTHO05D007394 3.7e-18 95.1 77 63.6
COL.COLO4_07519 Corchorus olitorius HOM05D005410 ORTHO05D007394 3.7e-18 95.1 77 63.6
VMungo0251G1592 Vigna mungo HOM05D005410 ORTHO05D007394 4.8e-18 94.7 77 62.3
Lj4g0005740 Lotus japonicus HOM05D005410 ORTHO05D007394 8.3e-18 94.0 77 64.9
MD11G1002900 Malus domestica HOM05D005410 ORTHO05D007394 1.1e-17 93.6 77 64.9
QL01p010651 Quercus lobata HOM05D005410 ORTHO05D007394 1.1e-17 93.6 77 66.2
Cpa.g.sc119.36 Carica papaya HOM05D005410 ORTHO05D007394 1.4e-17 93.2 76 67.1
Medtr8g088420 Medicago truncatula HOM05D005410 ORTHO05D007394 1.4e-17 93.2 77 63.6
Eucgr.J01758 Eucalyptus grandis HOM05D005410 ORTHO05D007394 1.8e-17 92.8 77 63.6
HanXRQChr07g0186621 Helianthus annuus HOM05D005410 ORTHO05D007394 1.8e-17 92.8 77 63.6
Hund13622 Selenicereus undatus HOM05D005410 ORTHO05D007394 1.8e-17 92.8 77 62.3
SGA_v2.0_scaffold3G01679 Striga asiatica HOM05D005410 ORTHO05D007394 1.8e-17 92.8 77 62.3
ECA233G0964 Erigeron canadensis HOM05D005410 ORTHO05D007394 2.4e-17 92.4 76 63.2
HPP92_001905 Vanilla planifolia HOM05D005410 ORTHO05D007394 4.1e-17 91.7 77 58.4
CANSAT11G0129 Cannabis sativa HOM05D005410 ORTHO05D007394 5.3e-17 91.3 77 63.6
PGSC0003DMG400032122 Solanum tuberosum HOM05D005410 ORTHO05D007394 5.3e-17 91.3 77 61.0
GSVIVG01025488001 Vitis vinifera HOM05D005410 ORTHO05D007394 5.3e-17 91.3 76 63.2
Aqoxy1G00490 Aquilegia oxysepala HOM05D005410 ORTHO05D007394 7.0e-17 90.9 77 61.0
CsaV3_4G017550 Cucumis sativus L. HOM05D005410 ORTHO05D007394 7.0e-17 90.9 77 61.0
FAN16G2022 Fragaria x ananassa HOM05D005410 ORTHO05D007394 7.0e-17 90.9 77 63.6
Oeu060891.1 Olea europaea HOM05D005410 ORTHO05D007394 7.0e-17 90.9 77 63.6
PSO339G0242 Papaver somniferum HOM05D005410 ORTHO05D007394 7.0e-17 90.9 77 64.9
PSO384G0864 Papaver somniferum HOM05D005410 ORTHO05D007394 7.0e-17 90.9 77 64.9
Rhsim13G0233300 Rhododendron simsii HOM05D005410 ORTHO05D007394 7.0e-17 90.9 77 63.6
TAR369G0462 Trochodendron aralioides HOM05D005410 ORTHO05D007394 7.0e-17 90.9 77 61.0
Actinidia16239 Actinidia chinensis HOM05D005410 ORTHO05D007394 9.1e-17 90.5 77 62.3
Haze_22935 Corylus avellana HOM05D005410 ORTHO05D007394 9.1e-17 90.5 77 64.9
FvH4_3g45781 Fragaria vesca HOM05D005410 ORTHO05D007394 9.1e-17 90.5 77 63.6
FAN11G0543 Fragaria x ananassa HOM05D005410 ORTHO05D007394 9.1e-17 90.5 77 63.6
FAN11G0605 Fragaria x ananassa HOM05D005410 ORTHO05D007394 9.1e-17 90.5 77 63.6
Glyma.05G166800 Glycine max HOM05D005410 ORTHO05D007394 9.1e-17 90.5 77 61.0
Glyma.08G124900 Glycine max HOM05D005410 ORTHO05D007394 9.1e-17 90.5 77 61.0
Peaxi162Scf00036g00221 Petunia axillaris HOM05D005410 ORTHO05D007394 9.1e-17 90.5 77 62.3
arahy.Tifrunner.gnm1.ann1.63K8WX Arachis hypogaea HOM05D005410 ORTHO05D007394 1.2e-16 90.1 77 61.0
arahy.Tifrunner.gnm1.ann1.GYZC8Z Arachis hypogaea HOM05D005410 ORTHO05D007394 1.2e-16 90.1 77 61.0
EL10Ac4g10389 Beta vulgaris HOM05D005410 ORTHO05D007394 1.2e-16 90.1 77 61.0
CiPaw.14G137400 Carya illinoinensis HOM05D005410 ORTHO05D007394 1.2e-16 90.1 77 61.0
CDE10G1105 Ceratophyllum demersum HOM05D005410 ORTHO05D007394 1.2e-16 90.1 77 59.7
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 1.2e-16 90.1 77 59.7
Nn2g15872 Nelumbo nucifera HOM05D005410 ORTHO05D007394 1.2e-16 90.1 77 59.7
Prupe.6G002700 Prunus persica HOM05D005410 ORTHO05D007394 1.2e-16 90.1 77 62.3
RcHm_v2.0_Chr5g0083861 Rosa chinensis HOM05D005410 ORTHO05D007394 1.2e-16 90.1 77 64.9
CAN.G1834.14 Capsicum annuum HOM05D005410 ORTHO05D007394 1.6e-16 89.7 77 61.0
Migut.N00542 Erythranthe guttata HOM05D005410 ORTHO05D007394 1.6e-16 89.7 77 61.0
Lalb_Chr12g0204581 Lupinus albus HOM05D005410 ORTHO05D007394 2.0e-16 89.4 77 62.3
Phvul.002G247200 Phaseolus vulgaris HOM05D005410 ORTHO05D007394 2.0e-16 89.4 77 59.7
Sopen01g001540 Solanum pennellii HOM05D005410 ORTHO05D007394 2.0e-16 89.4 77 59.7
TAR623G0245 Trochodendron aralioides HOM05D005410 ORTHO05D007394 2.0e-16 89.4 77 59.7
MSTRG.12800 Avicennia marina HOM05D005410 ORTHO05D007394 2.7e-16 89.0 77 58.4
FAN25G1403 Fragaria x ananassa HOM05D005410 ORTHO05D007394 2.7e-16 89.0 77 62.3
Oeu023974.1 Olea europaea HOM05D005410 ORTHO05D007394 2.7e-16 89.0 77 59.7
Sed0021908 Sechium edule HOM05D005410 ORTHO05D007394 2.7e-16 89.0 77 58.4
Thecc.09G203200 Theobroma cacao HOM05D005410 ORTHO05D007394 2.7e-16 89.0 77 58.4
Oeu023977.1 Olea europaea HOM05D005410 ORTHO05D007394 3.5e-16 88.6 77 59.7
SalBow3G3111 Salvia bowleyana HOM05D005410 ORTHO05D007394 3.5e-16 88.6 77 57.1
AUR62005847 Chenopodium quinoa HOM05D005410 ORTHO05D007394 4.5e-16 88.2 77 59.7
AUR62032839 Chenopodium quinoa HOM05D005410 ORTHO05D007394 4.5e-16 88.2 77 59.7
Gohir.D04G130700 Gossypium hirsutum HOM05D005410 ORTHO05D007394 4.5e-16 88.2 77 58.4
Gorai.012G114400 Gossypium raimondii HOM05D005410 ORTHO05D007394 4.5e-16 88.2 77 58.4
unitig_0.g1148 Utricularia gibba HOM05D005410 ORTHO05D007394 4.5e-16 88.2 77 58.4
vmacro17045 Vaccinium macrocarpon HOM05D005410 ORTHO05D007394 4.5e-16 88.2 77 61.0
CiPaw.13G177700 Carya illinoinensis HOM05D005410 ORTHO05D007394 5.9e-16 87.8 77 61.0
Gohir.A04G090700 Gossypium hirsutum HOM05D005410 ORTHO05D007394 5.9e-16 87.8 77 58.4
Lsat_1_v5_gn_6_55740 Lactuca sativa HOM05D005410 ORTHO05D007394 5.9e-16 87.8 77 59.7
Os07g0171100 Oryza sativa ssp. japonica HOM05D005410 ORTHO05D007394 7.7e-16 87.4 77 57.1
Lj1A521T33 Lonicera japonica HOM05D005410 ORTHO05D007394 1.0e-15 87.0 77 59.7
Lj1A522T64 Lonicera japonica HOM05D005410 ORTHO05D007394 1.0e-15 87.0 77 59.7
Potri.003G222200 Populus trichocarpa HOM05D005410 ORTHO05D007394 1.0e-15 87.0 77 58.4
Sc09g0000010 Simmondsia chinensis HOM05D005410 ORTHO05D007394 1.0e-15 87.0 77 59.7
Duzib168G1987 Durio zibethinus HOM05D005410 ORTHO05D007394 1.3e-15 86.7 77 59.7
Sabra03G0165200 Salix brachista HOM05D005410 ORTHO05D007394 1.3e-15 86.7 77 55.8
Zm00001eb300990 Zea mays HOM05D005410 ORTHO05D007394 1.7e-15 86.3 76 59.2
Nitab4.5_0000551g0050 Nicotiana tabacum HOM05D005410 ORTHO05D007394 2.2e-15 85.9 77 58.4
Nitab4.5_0006195g0040 Nicotiana tabacum HOM05D005410 ORTHO05D007394 2.9e-15 85.5 77 57.1
PGR102G1996 Punica granatum HOM05D005410 ORTHO05D007394 5.0e-15 84.7 77 58.4
ATR0697G079 Amborella trichopoda HOM05D005410 ORTHO05D007394 6.5e-15 84.3 75 60.0
CDE10G0059 Ceratophyllum demersum HOM05D005410 ORTHO05D007394 6.5e-15 84.3 74 59.5
MBI05_g04454_MAGBIO Magnolia biondii HOM05D005410 ORTHO05D007394 8.5e-15 84.0 77 59.7
Manes.15G110100 Manihot esculenta HOM05D005410 ORTHO05D007394 1.1e-14 83.6 77 57.1
Cc01_g00190 Coffea canephora HOM05D005410 ORTHO05D007394 1.5e-14 83.2 77 55.8
Potri.001G002700 Populus trichocarpa HOM05D005410 ORTHO05D007394 4.7e-13 78.2 77 57.1
SEGI_35670 Sequoiadendron giganteum HOM05D005410 ORTHO05D007394 6.1e-13 77.8 77 51.9
BcaB04g16956 Brassica carinata HOM05D005410 ORTHO05D009181 5.2e-12 74.7 67 65.7
TPR.G6787 Trifolium pratense HOM05D005410 ORTHO05D007394 3.4e-11 72.0 53 69.8
SMO238G0020 Selaginella moellendorffii HOM05D005410 ORTHO05D007394 3.7e-10 68.6 74 50.0
SMO329G0030 Selaginella moellendorffii HOM05D005410 ORTHO05D007394 3.7e-10 68.6 74 50.0
CBR_g66797 Chara braunii HOM05D005410 ORTHO05D007394 4.8e-10 68.2 75 48.0
Mapoly0020s0152 Marchantia polymorpha HOM05D005410 ORTHO05D007394 1.4e-09 66.6 77 46.8
Cfa009554 Carpinus fangiana HOM05D005410 ORTHO05D007394 2.4e-09 65.9 53 66.0
Pp3c19_15590 Physcomitrium patens HOM05D005410 ORTHO05D007394 7.0e-09 64.3 75 46.7
vmacro04262 Vaccinium macrocarpon HOM05D005410 ORTHO05D007394 9.1e-09 63.9 67 50.7
vmacro23200 Vaccinium macrocarpon HOM05D005410 ORTHO05D007394 1.2e-08 63.5 64 51.6
Psat7g062240 Pisum sativum HOM05D005410 ORTHO05D007394 4.5e-08 61.6 121 34.7
Psat7g064400 Pisum sativum HOM05D005410 ORTHO05D007394 2.9e-07 58.9 47 63.8
TAR626G1406 Trochodendron aralioides HOM05D004228 ORTHO05D005137 2.9e-07 58.9 62 48.4
Psat7g064480 Pisum sativum HOM05D005410 ORTHO05D007394 5.0e-07 58.2 32 81.2


User provided reference genes

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