Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p10310 Brassica napus HOM05D004312 ORTHO05D026447 1.6e-87 326.2 186 100.0
BolC6t36105H Brassica oleracea HOM05D004312 ORTHO05D026447 3.7e-52 208.8 149 89.9
BcaB04g19161 Brassica carinata HOM05D002513 ORTHO05D026447 7.5e-21 104.8 54 92.6
BcaC09g49015 Brassica carinata HOM05D004312 ORTHO05D005394 7.0e-19 98.2 53 84.9
A01p34090 Brassica napus HOM05D004312 ORTHO05D005394 7.0e-19 98.2 53 84.9
C01p43500 Brassica napus HOM05D004312 ORTHO05D005394 7.0e-19 98.2 53 84.9
BolC1t04310H Brassica oleracea HOM05D004312 ORTHO05D005394 7.0e-19 98.2 53 84.9
BraA01t03513Z Brassica rapa HOM05D004312 ORTHO05D005394 7.0e-19 98.2 53 84.9
BcaB04g20634 Brassica carinata HOM05D004312 ORTHO05D005394 2.7e-18 96.3 53 83.0
Thhalv10020971m.g Eutrema salsugineum HOM05D004312 ORTHO05D005394 3.5e-18 95.9 53 81.1
Sp3g18760 Schrenkiella parvula HOM05D004312 ORTHO05D005394 3.5e-18 95.9 53 81.1
AT3G20740 Arabidopsis thaliana HOM05D004312 ORTHO05D005394 7.8e-18 94.7 58 75.9
CARHR096560 Cardamine hirsuta HOM05D004312 ORTHO05D005394 7.8e-18 94.7 53 79.2
Carub.0003s2070 Capsella rubella HOM05D004312 ORTHO05D005394 2.9e-17 92.8 53 79.2
AL3G34660 Arabidopsis lyrata HOM05D004312 ORTHO05D005394 8.6e-17 91.3 58 74.1
Aa31LG8G7480 Aethionema arabicum HOM05D004312 ORTHO05D005394 9.5e-16 87.8 53 69.8
BcaB06g26144 Brassica carinata HOM05D004312 ORTHO05D005394 1.2e-15 87.4 52 75.0
Solyc07g064090.3 Solanum lycopersicum HOM05D004312 ORTHO05D005394 1.2e-15 87.4 52 73.1
Sopen07g032230 Solanum pennellii HOM05D004312 ORTHO05D005394 1.2e-15 87.4 52 73.1
PGSC0003DMG401019226 Solanum tuberosum HOM05D004312 ORTHO05D005394 1.2e-15 87.4 52 73.1
Nitab4.5_0000397g0030 Nicotiana tabacum HOM05D004312 ORTHO05D005394 1.6e-15 87.0 52 73.1
Nitab4.5_0009192g0020 Nicotiana tabacum HOM05D004312 ORTHO05D005394 1.6e-15 87.0 52 73.1
THA.LOC104825403 Tarenaya hassleriana HOM05D004312 ORTHO05D005394 1.6e-15 87.0 52 73.1
Lj8A165T113 Lonicera japonica HOM05D004312 ORTHO05D005394 2.8e-15 86.3 52 73.1
CANSAT25G0949 Cannabis sativa HOM05D004312 ORTHO05D005394 3.6e-15 85.9 52 71.2
CiPaw.11G183600 Carya illinoinensis HOM05D004312 ORTHO05D005394 3.6e-15 85.9 52 71.2
ClCG05G014780 Citrullus lanatus HOM05D004312 ORTHO05D005394 3.6e-15 85.9 57 70.2
DCAR_008679 Daucus carota HOM05D004312 ORTHO05D005394 3.6e-15 85.9 52 71.2
PGR031G3547 Punica granatum HOM05D004312 ORTHO05D005394 3.6e-15 85.9 57 70.2
Sed0007148 Sechium edule HOM05D004312 ORTHO05D005394 3.6e-15 85.9 57 70.2
Thecc.07G052900 Theobroma cacao HOM05D004312 ORTHO05D005394 3.6e-15 85.9 52 71.2
TWI39G0013 Tripterygium wilfordii HOM05D004312 ORTHO05D005394 3.6e-15 85.9 52 71.2
Atru.chr2.3209 Acer truncatum HOM05D004312 ORTHO05D005394 6.1e-15 85.1 57 68.4
Actinidia10705 Actinidia chinensis HOM05D004312 ORTHO05D005394 6.1e-15 85.1 52 71.2
Actinidia35316 Actinidia chinensis HOM05D004312 ORTHO05D005394 6.1e-15 85.1 52 71.2
MSTRG.6890 Avicennia marina HOM05D004312 ORTHO05D005394 6.1e-15 85.1 52 69.2
Migut.M01812 Erythranthe guttata HOM05D004312 ORTHO05D005394 6.1e-15 85.1 52 69.2
HanXRQChr11g0332981 Helianthus annuus HOM05D004312 ORTHO05D005394 6.1e-15 85.1 52 69.2
A05p28070 Brassica napus HOM05D004312 ORTHO05D005394 8.0e-15 84.7 53 71.7
BraA05t21689Z Brassica rapa HOM05D004312 ORTHO05D005394 8.0e-15 84.7 53 71.7
Ciclev10008697m.g Citrus clementina HOM05D004312 ORTHO05D005394 8.0e-15 84.7 52 69.2
MD03G1211700 Malus domestica HOM05D004312 ORTHO05D005394 8.0e-15 84.7 57 68.4
MD11G1227100 Malus domestica HOM05D004312 ORTHO05D005394 8.0e-15 84.7 57 68.4
Potri.001G417300 Populus trichocarpa HOM05D004312 ORTHO05D005394 8.0e-15 84.7 52 69.2
Sabra16G0283500 Salix brachista HOM05D004312 ORTHO05D005394 8.0e-15 84.7 52 69.2
MELO3C018124.2 Cucumis melo HOM05D004312 ORTHO05D005394 1.0e-14 84.3 57 68.4
CsaV3_3G022910 Cucumis sativus L. HOM05D004312 ORTHO05D005394 1.0e-14 84.3 57 68.4
Hma1.2p1_0562F.1_g179020 Hydrangea macrophylla HOM05D004312 ORTHO05D005394 1.0e-14 84.3 52 67.3
CSS0011160 Camellia sinensis var. sinensis HOM05D004312 ORTHO05D005394 1.4e-14 84.0 52 69.2
QL08p013340 Quercus lobata HOM05D004312 ORTHO05D005394 1.4e-14 84.0 57 70.2
RhsimUnG0253200 Rhododendron simsii HOM05D004312 ORTHO05D005394 1.4e-14 84.0 52 69.2
SGA_v2.0_scaffold9G04799 Striga asiatica HOM05D004312 ORTHO05D005394 1.4e-14 84.0 52 67.3
BcaC05g28288 Brassica carinata HOM05D004312 ORTHO05D005394 1.8e-14 83.6 53 69.8
C05p43470 Brassica napus HOM05D004312 ORTHO05D005394 1.8e-14 83.6 53 69.8
BolC5t33070H Brassica oleracea HOM05D004312 ORTHO05D005394 1.8e-14 83.6 53 69.8
CAN.G337.148 Capsicum annuum HOM05D004312 ORTHO05D005394 1.8e-14 83.6 49 73.5
COL.COLO4_09570 Corchorus olitorius HOM05D004312 ORTHO05D005394 1.8e-14 83.6 52 69.2
SalBow1G0135 Salvia bowleyana HOM05D004312 ORTHO05D005394 1.8e-14 83.6 51 70.6
SalBow3G2463 Salvia bowleyana HOM05D004312 ORTHO05D005394 1.8e-14 83.6 51 70.6
VMungo1215G3096 Vigna mungo HOM05D004312 ORTHO05D005394 1.8e-14 83.6 52 69.2
GSVIVG01014605001 Vitis vinifera HOM05D004312 ORTHO05D005394 1.8e-14 83.6 52 67.3
arahy.Tifrunner.gnm1.ann1.08T3T7 Arachis hypogaea HOM05D004312 ORTHO05D005394 2.3e-14 83.2 57 66.7
arahy.Tifrunner.gnm1.ann1.43SLKT Arachis hypogaea HOM05D004312 ORTHO05D005394 2.3e-14 83.2 57 66.7
arahy.Tifrunner.gnm1.ann1.IBM9RL Arachis hypogaea HOM05D004312 ORTHO05D005394 2.3e-14 83.2 57 66.7
arahy.Tifrunner.gnm1.ann1.Z28QK4 Arachis hypogaea HOM05D004312 ORTHO05D005394 2.3e-14 83.2 57 66.7
Eucgr.F03425 Eucalyptus grandis HOM05D004312 ORTHO05D005394 2.3e-14 83.2 51 70.6
BcaC05g28285 Brassica carinata HOM05D004312 ORTHO05D005394 3.1e-14 82.8 53 67.9
Dinv22305 Davidia involucrata HOM05D004312 ORTHO05D005394 3.1e-14 82.8 52 67.3
A05p28030 Brassica napus HOM05D004312 ORTHO05D005394 4.0e-14 82.4 53 66.0
BraA05t21685Z Brassica rapa HOM05D004312 ORTHO05D005394 4.0e-14 82.4 53 66.0
Cc05_g13230 Coffea canephora HOM05D004312 ORTHO05D005394 4.0e-14 82.4 52 69.2
ECA236G2119 Erigeron canadensis HOM05D004312 ORTHO05D005394 4.0e-14 82.4 52 67.3
Gohir.A13G141400 Gossypium hirsutum HOM05D004312 ORTHO05D005394 4.0e-14 82.4 52 69.2
Gohir.D13G146100 Gossypium hirsutum HOM05D004312 ORTHO05D005394 4.0e-14 82.4 52 69.2
Gorai.013G163900 Gossypium raimondii HOM05D004312 ORTHO05D005394 4.0e-14 82.4 52 69.2
Ca_12696_v3 Cicer arietinum L. HOM05D004312 ORTHO05D005394 5.2e-14 82.0 57 66.7
Lsat_1_v5_gn_7_108381 Lactuca sativa HOM05D004312 ORTHO05D005394 5.2e-14 82.0 52 67.3
Nn1g06998 Nelumbo nucifera HOM05D004312 ORTHO05D005394 5.2e-14 82.0 52 67.3
Psat6g038960 Pisum sativum HOM05D004312 ORTHO05D005394 5.2e-14 82.0 57 64.9
Cpa.g.sc97.70 Carica papaya HOM05D004312 ORTHO05D005394 6.8e-14 81.6 52 67.3
FvH4_3g21810 Fragaria vesca HOM05D004312 ORTHO05D005394 6.8e-14 81.6 57 66.7
FAN11G3136 Fragaria x ananassa HOM05D004312 ORTHO05D005394 6.8e-14 81.6 57 66.7
FAN21G3328 Fragaria x ananassa HOM05D004312 ORTHO05D005394 6.8e-14 81.6 57 66.7
FAN25G1427 Fragaria x ananassa HOM05D004312 ORTHO05D005394 6.8e-14 81.6 57 66.7
Glyma.02G152200 Glycine max HOM05D004312 ORTHO05D005394 6.8e-14 81.6 52 67.3
RcHm_v2.0_Chr5g0037411 Rosa chinensis HOM05D004312 ORTHO05D005394 6.8e-14 81.6 57 66.7
vmacro09746 Vaccinium macrocarpon HOM05D004312 ORTHO05D005394 6.8e-14 81.6 49 71.4
Oeu062615.1 Olea europaea HOM05D004312 ORTHO05D005394 8.9e-14 81.3 48 70.8
Hund23308 Selenicereus undatus HOM05D004312 ORTHO05D005394 8.9e-14 81.3 52 69.2
BolC5t33065H Brassica oleracea HOM05D004312 ORTHO05D005394 1.2e-13 80.9 53 66.0
AUR62015644 Chenopodium quinoa HOM05D004312 ORTHO05D005394 1.2e-13 80.9 52 67.3
CsaV3_UNG229030 Cucumis sativus L. HOM05D004312 ORTHO05D005394 1.2e-13 80.9 48 72.9
Duzib213G0708 Durio zibethinus HOM05D004312 ORTHO05D005394 1.2e-13 80.9 52 67.3
Manes.15G076500 Manihot esculenta HOM05D004312 ORTHO05D005394 1.2e-13 80.9 52 67.3
Phvul.005G091500 Phaseolus vulgaris HOM05D004312 ORTHO05D005394 1.2e-13 80.9 52 63.5
unitig_746.g26649 Utricularia gibba HOM05D004312 ORTHO05D005394 1.2e-13 80.9 52 67.3
EL10Ac4g07972 Beta vulgaris HOM05D004312 ORTHO05D005394 1.5e-13 80.5 52 67.3
Lalb_Chr14g0366111 Lupinus albus HOM05D004312 ORTHO05D005394 1.5e-13 80.5 52 65.4
Medtr1g028310 Medicago truncatula HOM05D004312 ORTHO05D005394 1.5e-13 80.5 52 65.4
Sc07g0002710 Simmondsia chinensis HOM05D004312 ORTHO05D005394 1.5e-13 80.5 52 67.3
TAR624G0412 Trochodendron aralioides HOM05D004312 ORTHO05D005394 1.5e-13 80.5 52 61.5
C05p43330 Brassica napus HOM05D004312 ORTHO05D005394 2.0e-13 80.1 66 59.1
Haze_09609 Corylus avellana HOM05D004312 ORTHO05D005394 2.0e-13 80.1 57 66.7
Cfa020416 Carpinus fangiana HOM05D004312 ORTHO05D005394 2.6e-13 79.7 57 64.9
AUR62020555 Chenopodium quinoa HOM05D004312 ORTHO05D005394 2.6e-13 79.7 52 65.4
Glyma.10G022000 Glycine max HOM05D004312 ORTHO05D005394 2.6e-13 79.7 52 65.4
Peaxi162Scf01086g00127 Petunia axillaris HOM05D004312 ORTHO05D005394 2.6e-13 79.7 56 66.1
Aqoxy6G01703 Aquilegia oxysepala HOM05D004312 ORTHO05D005394 3.4e-13 79.3 54 68.5
QL08p013465 Quercus lobata HOM05D004312 ORTHO05D005394 3.4e-13 79.3 57 66.7
QL08p013781 Quercus lobata HOM05D004312 ORTHO05D005394 3.4e-13 79.3 57 66.7
TPR.G33318 Trifolium pratense HOM05D004312 ORTHO05D005394 3.4e-13 79.3 57 63.2
CDE05G1308 Ceratophyllum demersum HOM05D004312 ORTHO05D005394 8.3e-12 74.7 52 59.6
Glyma.13G287200 Glycine max HOM05D004312 ORTHO05D005394 1.1e-11 74.3 52 61.5
HPP92_002196 Vanilla planifolia HOM05D004312 ORTHO05D005394 1.4e-11 73.9 52 57.7
Lalb_Chr14g0366131 Lupinus albus HOM05D004312 ORTHO05D005394 1.9e-11 73.6 52 59.6
MBI18_g30687_MAGBIO Magnolia biondii HOM05D004312 ORTHO05D005394 4.1e-11 72.4 52 53.8
PSO541G5632 Papaver somniferum HOM05D004312 ORTHO05D005394 4.1e-11 72.4 50 62.0
PSO675G7739 Papaver somniferum HOM05D004312 ORTHO05D005394 4.1e-11 72.4 50 62.0
ATR0073G014 Amborella trichopoda HOM05D004312 ORTHO05D005394 7.0e-11 71.6 54 57.4
Lj3g0015514 Lotus japonicus HOM05D004312 ORTHO05D005394 9.2e-11 71.2 51 60.8
Pp3c24_1010 Physcomitrium patens HOM05D004312 ORTHO05D005394 9.2e-11 71.2 54 59.3
SEGI_02518 Sequoiadendron giganteum HOM05D004312 ORTHO05D005394 2.7e-10 69.7 53 58.5
PSO339G5963 Papaver somniferum HOM05D004312 ORTHO05D005394 4.6e-10 68.9 54 57.4
Aa31LG8G7500 Aethionema arabicum HOM05D004312 ORTHO05D026447 1.0e-09 67.8 49 59.2
Glyma.12G214400 Glycine max HOM05D004312 ORTHO05D005394 2.3e-09 66.6 44 63.6
Mapoly0006s0078 Marchantia polymorpha HOM05D004312 ORTHO05D005394 2.3e-09 66.6 44 63.6
SMO347G0342 Selaginella moellendorffii HOM05D004312 ORTHO05D005394 2.3e-09 66.6 53 54.7
HanXRQChr15g0495681 Helianthus annuus HOM05D004312 ORTHO05D005394 3.9e-09 65.9 55 52.7
BcaC05g28287 Brassica carinata HOM05D004312 ORTHO05D005394 5.0e-09 65.5 48 60.4
Os08g0137100 Oryza sativa ssp. japonica HOM05D004312 ORTHO05D005394 8.6e-09 64.7 53 49.1
Os08g0137250 Oryza sativa ssp. japonica HOM05D004312 ORTHO05D005394 1.1e-08 64.3 52 48.1
PSO384G4488 Papaver somniferum HOM05D004312 ORTHO05D005394 1.5e-08 63.9 50 58.0
Zm00001eb416950 Zea mays HOM05D004312 ORTHO05D005394 4.3e-08 62.4 51 51.0
A05p28060 Brassica napus HOM05D004312 ORTHO05D005394 5.6e-08 62.0 48 56.2
HanXRQChr09g0244121 Helianthus annuus HOM05D004312 ORTHO05D005394 5.6e-08 62.0 55 49.1
BcaB06g26146 Brassica carinata HOM05D004312 ORTHO05D005394 7.3e-08 61.6 52 53.8
DCAR_006577 Daucus carota HOM05D004312 ORTHO05D005394 2.1e-07 60.1 48 50.0
AagrBONN_evm.TU.Sc2ySwM_117.25 Anthoceros agrestis HOM05D004312 ORTHO05D005394 6.8e-06 55.1 43 53.5


User provided reference genes

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