Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p57190 Brassica napus HOM05D001900 ORTHO05D003003 3.1e-41 171.4 87 100.0
AL6G39200 Arabidopsis lyrata HOM05D001900 ORTHO05D003003 2.4e-14 82.0 44 90.9
AT5G27740 Arabidopsis thaliana HOM05D001900 ORTHO05D003003 2.4e-14 82.0 44 90.9
BcaB04g19686 Brassica carinata HOM05D001900 ORTHO05D003003 2.4e-14 82.0 44 90.9
BcaB07g34200 Brassica carinata HOM05D001900 ORTHO05D003003 2.4e-14 82.0 44 90.9
BcaC03g17801 Brassica carinata HOM05D001900 ORTHO05D003003 2.4e-14 82.0 44 90.9
A02p38740 Brassica napus HOM05D001900 ORTHO05D003003 2.4e-14 82.0 44 90.9
A06p37350 Brassica napus HOM05D001900 ORTHO05D003003 2.4e-14 82.0 44 90.9
C02p58260 Brassica napus HOM05D001900 ORTHO05D003003 2.4e-14 82.0 44 90.9
C07p41110 Brassica napus HOM05D001900 ORTHO05D003003 2.4e-14 82.0 44 90.9
BolC2t11892H Brassica oleracea HOM05D001900 ORTHO05D003003 2.4e-14 82.0 44 90.9
BolC7t44638H Brassica oleracea HOM05D001900 ORTHO05D003003 2.4e-14 82.0 44 90.9
BraA02t08851Z Brassica rapa HOM05D001900 ORTHO05D003003 2.4e-14 82.0 44 90.9
BraA06t26658Z Brassica rapa HOM05D001900 ORTHO05D003003 2.4e-14 82.0 44 90.9
Carub.0006s2482 Capsella rubella HOM05D001900 ORTHO05D003003 2.4e-14 82.0 44 90.9
CARHR186260 Cardamine hirsuta HOM05D001900 ORTHO05D003003 4.2e-14 81.3 44 88.6
Thhalv10005385m.g Eutrema salsugineum HOM05D001900 ORTHO05D003003 4.2e-14 81.3 44 88.6
Sp2g20910 Schrenkiella parvula HOM05D001900 ORTHO05D003003 4.2e-14 81.3 44 88.6
Aa31LG11G9510 Aethionema arabicum HOM05D001900 ORTHO05D003003 7.1e-14 80.5 44 88.6
Sabra19G0050300 Salix brachista HOM05D001900 ORTHO05D003003 7.1e-14 80.5 44 88.6
CANSAT54G0333 Cannabis sativa HOM05D001900 ORTHO05D003003 9.2e-14 80.1 44 88.6
ClCG04G004690 Citrullus lanatus HOM05D001900 ORTHO05D003003 9.2e-14 80.1 44 86.4
Sed0019827 Sechium edule HOM05D001900 ORTHO05D003003 9.2e-14 80.1 44 86.4
Cpa.g.sc161.34 Carica papaya HOM05D001900 ORTHO05D003003 2.1e-13 79.0 44 86.4
COL.COLO4_28637 Corchorus olitorius HOM05D001900 ORTHO05D003003 2.1e-13 79.0 44 86.4
Dinv25044 Davidia involucrata HOM05D001900 ORTHO05D003003 2.1e-13 79.0 44 86.4
Thhalv10004490m.g Eutrema salsugineum HOM05D001900 ORTHO05D003003 2.1e-13 79.0 44 86.4
MD04G1041300 Malus domestica HOM05D001900 ORTHO05D003003 2.1e-13 79.0 44 84.1
MD12G1011300 Malus domestica HOM05D001900 ORTHO05D003003 2.1e-13 79.0 44 84.1
Potri.019G040000 Populus trichocarpa HOM05D001900 ORTHO05D003003 2.1e-13 79.0 44 86.4
Prupe.1G194700 Prunus persica HOM05D001900 ORTHO05D003003 2.1e-13 79.0 44 84.1
Prupe.7G013300 Prunus persica HOM05D001900 ORTHO05D003003 2.1e-13 79.0 44 84.1
RcHm_v2.0_Chr3g0496081 Rosa chinensis HOM05D001900 ORTHO05D003003 2.1e-13 79.0 44 84.1
THA.LOC104824562 Tarenaya hassleriana HOM05D001900 ORTHO05D003003 2.1e-13 79.0 44 86.4
CiPaw.09G166800 Carya illinoinensis HOM05D001900 ORTHO05D003003 2.7e-13 78.6 44 84.1
Haze_20410 Corylus avellana HOM05D001900 ORTHO05D003003 2.7e-13 78.6 44 81.8
PGR042G3124 Punica granatum HOM05D001900 ORTHO05D003003 2.7e-13 78.6 44 84.1
QL07p018995 Quercus lobata HOM05D001900 ORTHO05D003003 2.7e-13 78.6 44 84.1
MELO3C008864.2 Cucumis melo HOM05D001900 ORTHO05D003003 3.5e-13 78.2 44 84.1
CsaV3_4G031600 Cucumis sativus L. HOM05D001900 ORTHO05D003003 3.5e-13 78.2 44 84.1
HanXRQChr07g0196281 Helianthus annuus HOM05D001900 ORTHO05D003003 3.5e-13 78.2 44 86.4
Lj1A1072T25 Lonicera japonica HOM05D001900 ORTHO05D003003 3.5e-13 78.2 44 84.1
Prupe.4G268900 Prunus persica HOM05D001900 ORTHO05D003003 3.5e-13 78.2 45 80.0
Duzib128G0536 Durio zibethinus HOM05D001900 ORTHO05D003003 4.6e-13 77.8 44 84.1
Gohir.A11G229200 Gossypium hirsutum HOM05D001900 ORTHO05D003003 4.6e-13 77.8 44 84.1
Gorai.007G255400 Gossypium raimondii HOM05D001900 ORTHO05D003003 4.6e-13 77.8 44 84.1
HanXRQChr14g0453631 Helianthus annuus HOM05D001900 ORTHO05D003003 4.6e-13 77.8 44 84.1
MBI01_g21128_MAGBIO Magnolia biondii HOM05D001900 ORTHO05D003003 4.6e-13 77.8 45 82.2
Ca_11698_v3 Cicer arietinum L. HOM05D001900 ORTHO05D003003 6.0e-13 77.4 44 81.8
Ca_25350_v3 Cicer arietinum L. HOM05D001900 ORTHO05D003003 6.0e-13 77.4 44 81.8
DCAR_013487 Daucus carota HOM05D001900 ORTHO05D003003 6.0e-13 77.4 44 84.1
Medtr6g027590 Medicago truncatula HOM05D001900 ORTHO05D003003 6.0e-13 77.4 44 81.8
Medtr6g471010 Medicago truncatula HOM05D001900 ORTHO05D003003 6.0e-13 77.4 44 81.8
Psat1g030560 Pisum sativum HOM05D001900 ORTHO05D003003 6.0e-13 77.4 44 81.8
Psat1g091400 Pisum sativum HOM05D001900 ORTHO05D003003 6.0e-13 77.4 44 81.8
TPR.G25364 Trifolium pratense HOM05D001900 ORTHO05D003003 6.0e-13 77.4 44 81.8
Atru.chr2.1514 Acer truncatum HOM05D001900 ORTHO05D003003 7.8e-13 77.0 44 84.1
Nitab4.5_0002915g0020 Nicotiana tabacum HOM05D001900 ORTHO05D003003 7.8e-13 77.0 44 81.8
SGA_v2.0_scaffold66G22376 Striga asiatica HOM05D001900 ORTHO05D003003 7.8e-13 77.0 44 81.8
SGA_v2.0_scaffold69G23218 Striga asiatica HOM05D001900 ORTHO05D003003 7.8e-13 77.0 44 81.8
Thecc.05G242500 Theobroma cacao HOM05D001900 ORTHO05D003003 7.8e-13 77.0 43 83.7
TWI32G1012 Tripterygium wilfordii HOM05D001900 ORTHO05D003003 7.8e-13 77.0 44 84.1
Aqoxy2G00581 Aquilegia oxysepala HOM05D001900 ORTHO05D003003 1.0e-12 76.6 44 79.5
Cfa017715 Carpinus fangiana HOM05D001900 ORTHO05D003003 1.0e-12 76.6 44 79.5
ECA238G2580 Erigeron canadensis HOM05D001900 ORTHO05D003003 1.0e-12 76.6 44 84.1
Lsat_1_v5_gn_2_103681 Lactuca sativa HOM05D001900 ORTHO05D003003 1.0e-12 76.6 44 84.1
Manes.08G153200 Manihot esculenta HOM05D001900 ORTHO05D003003 1.0e-12 76.6 44 79.5
TAR623G1140 Trochodendron aralioides HOM05D001900 ORTHO05D003003 1.0e-12 76.6 41 90.2
Gohir.A13G163700 Gossypium hirsutum HOM05D001900 ORTHO05D003003 1.3e-12 76.3 44 84.1
Gohir.D13G166600 Gossypium hirsutum HOM05D001900 ORTHO05D003003 1.3e-12 76.3 44 84.1
arahy.Tifrunner.gnm1.ann1.EEI187 Arachis hypogaea HOM05D001900 ORTHO05D003003 1.7e-12 75.9 44 79.5
arahy.Tifrunner.gnm1.ann1.FX2G1C Arachis hypogaea HOM05D001900 ORTHO05D003003 1.7e-12 75.9 44 79.5
CSS0031386 Camellia sinensis var. sinensis HOM05D001900 ORTHO05D003003 1.7e-12 75.9 44 84.1
Nn2g14554 Nelumbo nucifera HOM05D001900 ORTHO05D003003 1.7e-12 75.9 44 84.1
Nitab4.5_0000121g0030 Nicotiana tabacum HOM05D001900 ORTHO05D003003 1.7e-12 75.9 44 79.5
Phvul.004G076500 Phaseolus vulgaris HOM05D001900 ORTHO05D003003 1.7e-12 75.9 44 75.0
MSTRG.6253 Avicennia marina HOM05D001900 ORTHO05D003003 2.3e-12 75.5 44 79.5
CAN.G959.51 Capsicum annuum HOM05D001900 ORTHO05D003003 2.3e-12 75.5 44 79.5
FvH4_1g23560 Fragaria vesca HOM05D001900 ORTHO05D003003 2.3e-12 75.5 44 81.8
FvH4_2g04970 Fragaria vesca HOM05D001900 ORTHO05D003003 2.3e-12 75.5 44 81.8
FAN07G0041 Fragaria x ananassa HOM05D001900 ORTHO05D003003 2.3e-12 75.5 44 81.8
FAN14G2403 Fragaria x ananassa HOM05D001900 ORTHO05D003003 2.3e-12 75.5 44 81.8
FAN15G0323 Fragaria x ananassa HOM05D001900 ORTHO05D003003 2.3e-12 75.5 44 81.8
FAN15G0949 Fragaria x ananassa HOM05D001900 ORTHO05D003003 2.3e-12 75.5 43 83.7
FAN20G1512 Fragaria x ananassa HOM05D001900 ORTHO05D003003 2.3e-12 75.5 44 81.8
FAN24G3538 Fragaria x ananassa HOM05D001900 ORTHO05D003003 2.3e-12 75.5 44 81.8
Gohir.D11G241300 Gossypium hirsutum HOM05D001900 ORTHO05D003003 2.3e-12 75.5 44 81.8
Oeu052789.1 Olea europaea HOM05D001900 ORTHO05D003003 2.3e-12 75.5 44 79.5
Peaxi162Scf00258g00523 Petunia axillaris HOM05D001900 ORTHO05D003003 2.3e-12 75.5 44 79.5
Sc22g0003180 Simmondsia chinensis HOM05D001900 ORTHO05D003003 2.3e-12 75.5 41 85.4
Solyc01g020440.3 Solanum lycopersicum HOM05D001900 ORTHO05D003003 2.3e-12 75.5 44 79.5
Sopen01g014330 Solanum pennellii HOM05D001900 ORTHO05D003003 2.3e-12 75.5 44 79.5
Sopen01g015760 Solanum pennellii HOM05D001900 ORTHO05D003003 2.3e-12 75.5 44 79.5
CDE07G1554 Ceratophyllum demersum HOM05D001900 ORTHO05D003003 3.0e-12 75.1 45 80.0
Migut.J01540 Erythranthe guttata HOM05D001900 ORTHO05D003003 3.0e-12 75.1 44 77.3
unitig_21.g20661 Utricularia gibba HOM05D001900 ORTHO05D003003 3.0e-12 75.1 44 77.3
Duzib177G0529 Durio zibethinus HOM05D001900 ORTHO05D003003 3.9e-12 74.7 44 81.8
Glyma.05G089100 Glycine max HOM05D001900 ORTHO05D003003 3.9e-12 74.7 44 75.0
MD04G1041000 Malus domestica HOM05D001900 ORTHO05D003003 3.9e-12 74.7 44 79.5
Rhsim03G0049600 Rhododendron simsii HOM05D001900 ORTHO05D003003 3.9e-12 74.7 44 81.8
vmacro07653 Vaccinium macrocarpon HOM05D001900 ORTHO05D003003 3.9e-12 74.7 44 81.8
EL10Ac5g11694 Beta vulgaris HOM05D001900 ORTHO05D003003 5.1e-12 74.3 41 85.4
AUR62038453 Chenopodium quinoa HOM05D001900 ORTHO05D003003 5.1e-12 74.3 41 85.4
AUR62042150 Chenopodium quinoa HOM05D001900 ORTHO05D003003 5.1e-12 74.3 41 85.4
Ciclev10020854m.g Citrus clementina HOM05D001900 ORTHO05D003003 5.1e-12 74.3 44 77.3
FvH4_7g02410 Fragaria vesca HOM05D001900 ORTHO05D003003 5.1e-12 74.3 44 79.5
FAN02G2150 Fragaria x ananassa HOM05D001900 ORTHO05D003003 5.1e-12 74.3 44 79.5
Solyc01g020220.3 Solanum lycopersicum HOM05D001900 ORTHO05D003003 5.1e-12 74.3 44 77.3
GSVIVG01022436001 Vitis vinifera HOM05D001900 ORTHO05D003003 5.1e-12 74.3 44 79.5
Lsat_1_v5_gn_3_116420 Lactuca sativa HOM05D001378 ORTHO05D001249 6.6e-12 73.9 44 79.5
Sopen01g010500 Solanum pennellii HOM05D001900 ORTHO05D003003 6.6e-12 73.9 44 77.3
ATR0697G074 Amborella trichopoda HOM05D001900 ORTHO05D003003 8.7e-12 73.6 45 77.8
CDE06G2247 Ceratophyllum demersum HOM05D001900 ORTHO05D003003 8.7e-12 73.6 45 75.6
Lj2g0025638 Lotus japonicus HOM05D001900 ORTHO05D003003 8.7e-12 73.6 44 75.0
SalBow6G4052 Salvia bowleyana HOM05D001900 ORTHO05D003003 8.7e-12 73.6 44 77.3
SalBow6G6368 Salvia bowleyana HOM05D001900 ORTHO05D003003 8.7e-12 73.6 44 77.3
VMungo0464G0076 Vigna mungo HOM05D001900 ORTHO05D003003 8.7e-12 73.6 44 70.5
Eucgr.A02138 Eucalyptus grandis HOM05D001900 ORTHO05D003003 1.1e-11 73.2 44 75.0
Gorai.013G195900 Gossypium raimondii HOM05D001900 ORTHO05D003003 1.1e-11 73.2 44 81.8
Actinidia37818 Actinidia chinensis HOM05D001900 ORTHO05D003003 1.5e-11 72.8 44 79.5
Nitab4.5_0009998g0020 Nicotiana tabacum HOM05D001900 ORTHO05D003003 1.5e-11 72.8 44 75.0
Ah.12g061760 Amaranthus hybridus HOM05D001900 ORTHO05D003003 2.5e-11 72.0 41 80.5
arahy.Tifrunner.gnm1.ann1.7G7S7J Arachis hypogaea HOM05D001900 ORTHO05D003003 2.5e-11 72.0 44 75.0
PSO339G1619 Papaver somniferum HOM05D001900 ORTHO05D003003 2.5e-11 72.0 44 75.0
PSO384G1286 Papaver somniferum HOM05D001900 ORTHO05D003003 2.5e-11 72.0 44 75.0
Cc06_g21450 Coffea canephora HOM05D001900 ORTHO05D003003 3.3e-11 71.6 45 68.9
Lalb_Chr02g0157371 Lupinus albus HOM05D001900 ORTHO05D003003 5.6e-11 70.9 44 70.5
HanXRQChr14g0433601 Helianthus annuus HOM05D001900 ORTHO05D003003 9.6e-11 70.1 44 79.5
HPP92_015892 Vanilla planifolia HOM05D001900 ORTHO05D003003 9.6e-11 70.1 44 75.0
SMO271G0133 Selaginella moellendorffii HOM05D001900 ORTHO05D003003 1.6e-10 69.3 45 71.1
Eucgr.A02136 Eucalyptus grandis HOM05D001900 ORTHO05D003003 2.1e-10 68.9 41 75.6
HanXRQChr09g0242001 Helianthus annuus HOM05D001900 ORTHO05D003003 2.8e-10 68.6 46 73.9
Pp3c25_5630 Physcomitrium patens HOM05D001900 ORTHO05D003003 3.6e-10 68.2 45 66.7
AagrBONN_evm.TU.Sc2ySwM_117.2372 Anthoceros agrestis HOM05D001900 ORTHO05D003003 8.1e-10 67.0 45 66.7
CBR_g29296 Chara braunii HOM05D001900 ORTHO05D003003 1.1e-09 66.6 45 66.7
Mapoly0170s0033 Marchantia polymorpha HOM05D001900 ORTHO05D003003 1.1e-09 66.6 45 64.4
Zm00001eb060330 Zea mays HOM05D001900 ORTHO05D003003 1.8e-09 65.9 43 65.1
Zm00001eb213170 Zea mays HOM05D001900 ORTHO05D003003 3.1e-09 65.1 43 65.1
Os03g0792600 Oryza sativa ssp. japonica HOM05D001900 ORTHO05D003003 4.0e-09 64.7 43 65.1
MCO13G013 Micromonas commoda HOM05D001900 ORTHO05D003003 2.2e-07 58.9 45 55.6
Cre16.g679950 Chlamydomonas reinhardtii HOM05D001900 ORTHO05D003003 3.8e-07 58.2 42 61.9
FAN23G0682 Fragaria x ananassa HOM05D001900 ORTHO05D003003 2.4e-06 55.5 35 74.3
SGA_v2.0_scaffold60G20921 Striga asiatica HOM05D001900 ORTHO05D402831 4.2e-06 54.7 33 75.8
PRCOL_00007014 Prasinoderma coloniale HOM05D001900 ORTHO05D003003 5.4e-06 54.3 39 56.4


User provided reference genes

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