Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p50240 Brassica napus HOM05D003995 ORTHO05D004800 0.0e+00 1333.9 694 100.0
BraA05t22150Z Brassica rapa HOM05D003995 ORTHO05D004800 0.0e+00 1299.6 696 97.7
BcaC05g28900 Brassica carinata HOM05D003995 ORTHO05D004800 0.0e+00 1297.7 696 97.7
BolC5t33775H Brassica oleracea HOM05D003995 ORTHO05D004800 0.0e+00 1297.7 696 97.7
A05p33250 Brassica napus HOM05D003995 ORTHO05D004800 0.0e+00 1292.7 696 97.1
BcaB06g25717 Brassica carinata HOM05D003995 ORTHO05D004800 0.0e+00 1271.5 696 95.8
Sp3g14640 Schrenkiella parvula HOM05D003995 ORTHO05D004800 0.0e+00 1243.4 695 92.9
CARHR091480 Cardamine hirsuta HOM05D003995 ORTHO05D004800 0.0e+00 1195.3 696 89.1
AT3G16270 Arabidopsis thaliana HOM05D003995 ORTHO05D004800 0.0e+00 1176.0 696 88.6
AL3G29010 Arabidopsis lyrata HOM05D003995 ORTHO05D004800 0.0e+00 1171.8 696 88.4
Thhalv10020187m.g Eutrema salsugineum HOM05D003995 ORTHO05D004800 0.0e+00 1169.5 695 88.2
Carub.0003s1602 Capsella rubella HOM05D003995 ORTHO05D004800 0.0e+00 1161.7 696 87.5
Aa31LG8G3420 Aethionema arabicum HOM05D003995 ORTHO05D004800 0.0e+00 1077.0 703 81.1
THA.LOC104817968 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 2.1e-281 972.2 703 73.8
THA.LOC104810534 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 7.8e-265 917.1 704 70.2
Thecc.06G096000 Theobroma cacao HOM05D003995 ORTHO05D004800 1.9e-218 763.1 713 60.9
Potri.001G187000 Populus trichocarpa HOM05D003995 ORTHO05D004800 5.5e-218 761.5 713 60.2
COL.COLO4_30474 Corchorus olitorius HOM05D003995 ORTHO05D004800 8.8e-216 754.2 707 60.1
FvH4_6g32000 Fragaria vesca HOM05D003995 ORTHO05D004800 2.0e-215 753.1 711 59.2
QL05p021104 Quercus lobata HOM05D003995 ORTHO05D004800 1.8e-213 746.5 713 60.6
FAN05G2434 Fragaria x ananassa HOM05D003995 ORTHO05D004800 2.6e-212 742.7 733 58.1
Manes.04G131700 Manihot esculenta HOM05D003995 ORTHO05D004800 7.2e-210 734.6 717 58.2
Cpa.g.sc109.33 Carica papaya HOM05D003995 ORTHO05D004800 1.4e-208 730.3 702 60.7
Cfa002115 Carpinus fangiana HOM05D003995 ORTHO05D004800 3.3e-207 725.7 710 59.2
Lj3g0012728 Lotus japonicus HOM05D003995 ORTHO05D004800 3.3e-207 725.7 715 58.6
Manes.11G036200 Manihot esculenta HOM05D003995 ORTHO05D004800 3.3e-207 725.7 732 57.4
Gohir.A02G119100 Gossypium hirsutum HOM05D003995 ORTHO05D004800 4.4e-207 725.3 707 59.5
TPR.G14825 Trifolium pratense HOM05D003995 ORTHO05D004800 4.4e-207 725.3 723 59.3
Gohir.A05G128000 Gossypium hirsutum HOM05D003995 ORTHO05D004800 7.5e-207 724.5 708 58.5
Prupe.3G063200 Prunus persica HOM05D003995 ORTHO05D004800 9.7e-207 724.2 712 58.4
Gorai.009G136200 Gossypium raimondii HOM05D003995 ORTHO05D004800 1.3e-206 723.8 708 58.9
Haze_16334 Corylus avellana HOM05D003995 ORTHO05D004800 3.7e-206 722.2 727 58.5
Psat4g198440 Pisum sativum HOM05D003995 ORTHO05D004800 3.7e-206 722.2 721 57.8
MD09G1207100 Malus domestica HOM05D003995 ORTHO05D004800 1.8e-205 719.9 713 57.9
Glyma.07G017700 Glycine max HOM05D003995 ORTHO05D004800 3.1e-205 719.2 714 59.1
FAN14G0476 Fragaria x ananassa HOM05D003995 ORTHO05D004800 2.0e-204 716.5 711 57.5
Gohir.D05G132500 Gossypium hirsutum HOM05D003995 ORTHO05D004800 4.5e-204 715.3 708 58.5
CiPaw.02G147500 Carya illinoinensis HOM05D003995 ORTHO05D004800 5.9e-204 714.9 712 58.0
VMungo0331G0049 Vigna mungo HOM05D003995 ORTHO05D004800 7.7e-204 714.5 713 58.8
GSVIVG01017039001 Vitis vinifera HOM05D003995 ORTHO05D004800 1.7e-203 713.4 713 57.8
CiPaw.01G233700 Carya illinoinensis HOM05D003995 ORTHO05D004800 8.5e-203 711.1 709 57.0
Gohir.D03G059900 Gossypium hirsutum HOM05D003995 ORTHO05D004800 8.5e-203 711.1 707 58.7
Medtr8g013720 Medicago truncatula HOM05D003995 ORTHO05D004800 1.5e-202 710.3 726 58.1
arahy.Tifrunner.gnm1.ann1.8U94IH Arachis hypogaea HOM05D003995 ORTHO05D004800 9.4e-202 707.6 711 57.2
Atru.chr1.3467 Acer truncatum HOM05D003995 ORTHO05D004800 1.6e-201 706.8 698 57.7
CANSAT56G4226 Cannabis sativa HOM05D003995 ORTHO05D004800 1.6e-201 706.8 713 58.2
TAR624G1104 Trochodendron aralioides HOM05D003995 ORTHO05D004800 1.6e-201 706.8 720 57.8
Eucgr.F03056 Eucalyptus grandis HOM05D003995 ORTHO05D004800 6.1e-201 704.9 707 57.1
Actinidia21699 Actinidia chinensis HOM05D003995 ORTHO05D004800 1.0e-200 704.1 714 58.1
Duzib235G0154 Durio zibethinus HOM05D003995 ORTHO05D004800 1.8e-200 703.4 695 58.1
Ca_11524_v3 Cicer arietinum L. HOM05D003995 ORTHO05D004800 2.3e-200 703.0 717 58.3
MD17G1187800 Malus domestica HOM05D003995 ORTHO05D004800 3.0e-200 702.6 719 56.6
Gorai.003G063800 Gossypium raimondii HOM05D003995 ORTHO05D004800 5.2e-200 701.8 702 58.7
FAN02G0974 Fragaria x ananassa HOM05D003995 ORTHO05D004800 4.8e-198 695.3 713 56.7
Hma1.2p1_0659F.1_g197350 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 1.4e-197 693.7 710 58.0
Hma1.2p1_1689F.1_g297670 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 1.2e-196 690.6 712 57.4
Ciclev10027380m.g Citrus clementina HOM05D003995 ORTHO05D004800 2.0e-196 689.9 742 55.3
Gorai.010G229800 Gossypium raimondii HOM05D003995 ORTHO05D004800 4.5e-196 688.7 707 57.3
Lalb_Chr01g0013091 Lupinus albus HOM05D003995 ORTHO05D004800 7.7e-196 688.0 704 57.0
FAN09G2208 Fragaria x ananassa HOM05D003995 ORTHO05D004800 1.3e-195 687.2 713 56.7
TWI75G1811 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 6.5e-195 684.9 706 56.9
CSS0042187 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 1.5e-194 683.7 713 56.9
Phvul.010G147000 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 1.5e-194 683.7 712 56.7
TWI12G0239 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 1.5e-194 683.7 714 56.0
Lalb_Chr25g0280081 Lupinus albus HOM05D003995 ORTHO05D004800 3.2e-194 682.6 709 56.6
Sc12g0009570 Simmondsia chinensis HOM05D003995 ORTHO05D004800 4.2e-194 682.2 709 54.9
TWI18G0079 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 4.2e-194 682.2 711 55.4
CSS0043166 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 2.1e-193 679.9 714 57.0
Gohir.D06G197450 Gossypium hirsutum HOM05D003995 ORTHO05D004800 2.8e-193 679.5 707 56.9
Peaxi162Scf00090g00073 Petunia axillaris HOM05D003995 ORTHO05D004800 1.0e-192 677.6 707 55.3
CsaV3_3G023750 Cucumis sativus L. HOM05D003995 ORTHO05D004800 3.0e-192 676.0 710 55.8
Nitab4.5_0002549g0020 Nicotiana tabacum HOM05D003995 ORTHO05D004800 1.3e-190 670.6 706 55.5
PSO210G6397 Papaver somniferum HOM05D003995 ORTHO05D004800 2.2e-190 669.8 724 55.9
TAR102G0002 Trochodendron aralioides HOM05D003995 ORTHO05D004800 7.0e-189 664.8 721 54.8
PSO210G6330 Papaver somniferum HOM05D003995 ORTHO05D004800 9.2e-189 664.5 727 56.4
Sed0003559 Sechium edule HOM05D003995 ORTHO05D004800 2.0e-188 663.3 716 55.3
DCAR_019957 Daucus carota HOM05D003995 ORTHO05D004800 4.5e-188 662.1 706 55.0
Sed0011470 Sechium edule HOM05D003995 ORTHO05D004800 5.9e-188 661.8 720 54.7
Cc00_g10390 Coffea canephora HOM05D003995 ORTHO05D004800 1.0e-187 661.0 710 54.1
Hund06648 Selenicereus undatus HOM05D003995 ORTHO05D004800 1.0e-187 661.0 721 54.5
PGR102G1287 Punica granatum HOM05D003995 ORTHO05D004800 2.9e-187 659.4 716 54.5
Glyma.08G202900 Glycine max HOM05D003995 ORTHO05D004800 6.6e-187 658.3 713 55.7
AUR62031875 Chenopodium quinoa HOM05D003995 ORTHO05D004800 9.5e-186 654.4 712 53.2
CAN.G60.5 Capsicum annuum HOM05D003995 ORTHO05D004800 4.7e-185 652.1 705 53.8
Glyma.13G355800 Glycine max HOM05D003995 ORTHO05D004800 6.1e-185 651.7 713 54.0
Aqoxy7G01498 Aquilegia oxysepala HOM05D003995 ORTHO05D004800 1.0e-184 651.0 719 53.8
Migut.H00960 Erythranthe guttata HOM05D003995 ORTHO05D004800 2.3e-184 649.8 712 53.5
PGR102G1422 Punica granatum HOM05D003995 ORTHO05D004800 3.0e-184 649.4 710 54.8
PGSC0003DMG400008535 Solanum tuberosum HOM05D003995 ORTHO05D004800 4.0e-184 649.0 708 53.8
Eucgr.J02949 Eucalyptus grandis HOM05D003995 ORTHO05D004800 5.2e-184 648.7 716 53.1
Dinv30461 Davidia involucrata HOM05D003995 ORTHO05D004800 4.4e-183 645.6 710 54.1
EL10Ac9g22110 Beta vulgaris HOM05D003995 ORTHO05D004800 5.7e-183 645.2 704 52.1
MSTRG.23509 Avicennia marina HOM05D003995 ORTHO05D004800 4.1e-181 639.0 713 53.2
Oeu017626.1 Olea europaea HOM05D003995 ORTHO05D004800 7.0e-181 638.3 714 54.9
Sopen04g017970 Solanum pennellii HOM05D003995 ORTHO05D004800 1.2e-180 637.5 705 53.3
Dinv38000 Davidia involucrata HOM05D003995 ORTHO05D004800 1.6e-180 637.1 697 54.8
AUR62022169 Chenopodium quinoa HOM05D003995 ORTHO05D004800 2.3e-179 633.3 712 52.4
Solyc04g047770.3 Solanum lycopersicum HOM05D003995 ORTHO05D004800 4.3e-178 629.0 705 52.9
Lsat_1_v5_gn_2_39201 Lactuca sativa HOM05D003995 ORTHO05D004800 9.5e-178 627.9 725 53.8
Oeu050081.1 Olea europaea HOM05D003995 ORTHO05D004800 8.0e-177 624.8 710 53.2
SGA_v2.0_scaffold44G16540 Striga asiatica HOM05D003995 ORTHO05D004800 3.2e-173 612.8 715 52.6
Nitab4.5_0004354g0010 Nicotiana tabacum HOM05D003995 ORTHO05D004800 4.6e-172 609.0 865 45.5
Ah.01g005620 Amaranthus hybridus HOM05D003995 ORTHO05D004800 7.8e-172 608.2 711 50.6
ECA248G2833 Erigeron canadensis HOM05D003995 ORTHO05D004800 1.0e-171 607.8 684 54.2
Ah.01g021840 Amaranthus hybridus HOM05D003995 ORTHO05D004800 1.2e-169 600.9 702 51.1
MBI04_g27074_MAGBIO Magnolia biondii HOM05D003266 ORTHO05D003718 1.6e-169 600.5 730 52.1
CSS0032416 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 3.6e-169 599.4 708 52.7
HanXRQChr14g0434431 Helianthus annuus HOM05D003995 ORTHO05D004800 6.2e-169 598.6 706 52.5
Rhsim08G0225700 Rhododendron simsii HOM05D003995 ORTHO05D004800 6.2e-169 598.6 711 51.8
VMungo1080G0563 Vigna mungo HOM05D003995 ORTHO05D004800 8.1e-169 598.2 701 51.5
Os01g0232400 Oryza sativa ssp. japonica HOM05D003995 ORTHO05D004800 2.3e-168 596.7 712 50.3
HanXRQChr01g0017801 Helianthus annuus HOM05D003995 ORTHO05D004800 8.9e-168 594.7 706 52.7
ATR0705G117 Amborella trichopoda HOM05D003995 ORTHO05D004800 5.8e-167 592.0 727 51.6
Zm00001eb339300 Zea mays HOM05D003995 ORTHO05D004800 2.9e-166 589.7 708 50.4
Phvul.005G170500 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 1.2e-164 584.3 710 49.7
CDE08G1118 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 5.1e-163 578.9 707 49.5
CDE02G3541 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 2.1e-161 573.5 711 48.9
SalBow1G2060 Salvia bowleyana HOM05D003995 ORTHO05D004800 3.6e-161 572.8 740 48.6
Zm00001eb119170 Zea mays HOM05D003995 ORTHO05D004800 3.4e-159 566.2 705 48.9
MELO3C012986.2 Cucumis melo HOM05D003995 ORTHO05D004800 4.9e-158 562.4 643 53.0
SHI11063 Sapria himalayana HOM05D003995 ORTHO05D004800 6.0e-148 528.9 691 49.1
Nn2g11632 Nelumbo nucifera HOM05D003995 ORTHO05D004800 5.6e-146 522.3 719 47.7
HPP92_008092 Vanilla planifolia HOM05D003995 ORTHO05D004800 5.6e-138 495.7 730 46.0
Gohir.A06G188875 Gossypium hirsutum HOM05D003995 ORTHO05D004800 6.2e-129 465.7 373 67.6
SalBow1G1048 Salvia bowleyana HOM05D003995 ORTHO05D004800 1.7e-126 457.6 375 62.9
SalBow1G5856 Salvia bowleyana HOM05D003995 ORTHO05D004800 1.7e-126 457.6 375 62.9
SEGI_23305 Sequoiadendron giganteum HOM05D003995 ORTHO05D004800 2.5e-125 453.8 740 41.5
Nn3g18163 Nelumbo nucifera HOM05D003995 ORTHO05D004800 5.5e-125 452.6 382 63.6
MBI01_g24453_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 4.3e-122 443.0 682 45.7
QL04p048641 Quercus lobata HOM05D003995 ORTHO05D004800 2.2e-113 414.1 606 44.2
RcHm_v2.0_Chr2g0139591 Rosa chinensis HOM05D003995 ORTHO05D004800 3.7e-113 413.3 323 69.7
Lj4A820G41 Lonicera japonica HOM05D003995 ORTHO05D004800 1.5e-106 391.3 548 48.9
vmacro18871 Vaccinium macrocarpon HOM05D003995 ORTHO05D004800 9.7e-106 388.7 323 65.0
Mapoly0022s0096 Marchantia polymorpha HOM05D003995 ORTHO05D004800 2.8e-97 360.5 748 38.6
SMO340G0180 Selaginella moellendorffii HOM05D003995 ORTHO05D004800 6.5e-94 349.4 714 37.4
Pp3c2_17390 Physcomitrium patens HOM05D003995 ORTHO05D004800 3.6e-92 343.6 737 37.6
AagrBONN_evm.TU.Sc2ySwM_362.567 Anthoceros agrestis HOM05D003995 ORTHO05D004800 4.1e-88 330.1 769 35.2
Sabra01G0153300 Salix brachista HOM05D003995 ORTHO05D004800 2.1e-84 317.8 392 49.2
Hund00665 Selenicereus undatus HOM05D003995 ORTHO05D004800 2.1e-84 317.8 482 42.5
RcHm_v2.0_Chr2g0139601 Rosa chinensis HOM05D003995 ORTHO05D004800 1.8e-83 314.7 389 48.3
arahy.Tifrunner.gnm1.ann1.QE1TJP Arachis hypogaea HOM05D003995 ORTHO05D004800 3.5e-79 300.4 389 47.8
MBI01_g39826_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 3.1e-72 277.3 623 36.1
CBR_g36315 Chara braunii HOM05D003995 ORTHO05D004800 8.9e-59 232.6 586 34.5
Actinidia39150 Actinidia chinensis HOM05D003995 ORTHO05D004800 7.8e-55 219.5 346 43.6
CBR_g31940 Chara braunii HOM05D003995 ORTHO05D004800 7.8e-55 219.5 441 35.1
Actinidia32710 Actinidia chinensis HOM05D003995 ORTHO05D004800 4.0e-51 207.2 152 72.4
ClCG07G013220 Citrullus lanatus HOM05D003995 ORTHO05D004800 7.5e-50 203.0 342 43.0
vmacro18870 Vaccinium macrocarpon HOM05D003995 ORTHO05D004800 5.2e-43 180.3 346 40.2
CBR_g25753 Chara braunii HOM05D003995 ORTHO05D004800 6.0e-39 166.8 251 39.8
CDE02G4060 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 7.8e-39 166.4 221 43.9
Actinidia32709 Actinidia chinensis HOM05D003995 ORTHO05D004800 9.6e-37 159.5 343 37.3
Glyma.15G018300 Glycine max HOM05D003995 ORTHO05D004800 9.6e-37 159.5 254 42.1
Cre12.g545300 Chlamydomonas reinhardtii HOM05D003995 ORTHO05D004800 4.6e-31 140.6 398 30.7
Actinidia09000 Actinidia chinensis HOM05D003995 ORTHO05D004800 5.1e-30 137.1 162 52.5
Cre12.g545150 Chlamydomonas reinhardtii HOM05D003995 ORTHO05D004800 3.6e-28 131.0 375 31.2
FAN18G0014 Fragaria x ananassa HOM05D003995 ORTHO05D004800 5.8e-26 123.6 69 87.0
Lj4C820T9 Lonicera japonica HOM05D003995 ORTHO05D004800 2.2e-25 121.7 69 87.0
PRCOL_00002233 Prasinoderma coloniale HOM05D003995 ORTHO05D004800 4.9e-25 120.6 391 27.1
HanXRQChr10g0310971 Helianthus annuus HOM05D003995 ORTHO05D004800 1.4e-24 119.0 164 47.0
MBI07_g11499_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 2.1e-20 105.1 62 83.9
Actinidia08998 Actinidia chinensis HOM05D003995 ORTHO05D004800 2.0e-18 98.6 57 84.2
FvH4_5g23151 Fragaria vesca HOM05D003995 ORTHO05D004800 3.8e-17 94.4 50 90.0
SEGI_12342 Sequoiadendron giganteum HOM05D003995 ORTHO05D004800 3.8e-17 94.4 82 52.4
FvH4_7g32131 Fragaria vesca HOM05D003995 ORTHO05D004800 4.2e-16 90.9 50 86.0
Lsat_1_v5_gn_7_27180 Lactuca sativa HOM05D003995 ORTHO05D004605 1.3e-12 79.3 60 63.3
Actinidia39149 Actinidia chinensis HOM05D003995 ORTHO05D004800 3.7e-12 77.8 157 36.9
Gohir.D03G024850 Gossypium hirsutum HOM05D003995 ORTHO05D004800 9.0e-11 73.2 94 45.7
Gorai.003G083400 Gossypium raimondii HOM05D003995 ORTHO05D004800 5.8e-10 70.5 97 46.4
MCO13G545 Micromonas commoda HOM05D003995 ORTHO05D004800 1.3e-09 69.3 107 36.4
Zm00001eb248030 Zea mays HOM05D002169 ORTHO05D004800 1.7e-09 68.9 87 47.1
Pp3c1_18430 Physcomitrium patens HOM05D003995 ORTHO05D004800 2.9e-09 68.2 424 27.1
MBI03_g21265_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 3.8e-09 67.8 46 69.6


User provided reference genes

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