Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p33660 Brassica napus HOM05D002279 ORTHO05D027816 8.7e-88 327.0 175 100.0
BolC5t32097H Brassica oleracea HOM05D002279 ORTHO05D027816 1.0e-83 313.5 169 98.2
C05p02340 Brassica napus HOM05D002279 ORTHO05D002644 1.2e-36 157.1 118 72.0
BolC5t29013H Brassica oleracea HOM05D002279 ORTHO05D002644 2.9e-35 152.5 118 71.2
A10p02540 Brassica napus HOM05D002279 ORTHO05D002644 6.6e-35 151.4 115 71.3
BraA10t42523Z Brassica rapa HOM05D002279 ORTHO05D002644 8.6e-35 151.0 117 70.1
BcaC05g24473 Brassica carinata HOM05D002279 ORTHO05D002644 7.3e-34 147.9 118 69.5
Sp1g02900 Schrenkiella parvula HOM05D002279 ORTHO05D002644 1.2e-31 140.6 120 66.7
Thhalv10006844m.g Eutrema salsugineum HOM05D002279 ORTHO05D002644 2.0e-31 139.8 128 63.3
CARHR003420 Cardamine hirsuta HOM05D002279 ORTHO05D002644 1.1e-29 134.0 128 61.7
AT1G04080 Arabidopsis thaliana HOM05D002279 ORTHO05D002644 1.0e-27 127.5 128 60.2
Carub.0001s0323 Capsella rubella HOM05D002279 ORTHO05D002644 1.7e-27 126.7 128 60.2
THA.LOC104826051 Tarenaya hassleriana HOM05D002279 ORTHO05D002644 8.6e-27 124.4 114 60.5
AL1G13680 Arabidopsis lyrata HOM05D002279 ORTHO05D002644 2.1e-25 119.8 128 57.0
BolC8t46891H Brassica oleracea HOM05D002279 ORTHO05D002644 1.1e-24 117.5 142 55.6
THA.LOC104816099 Tarenaya hassleriana HOM05D002279 ORTHO05D002644 3.1e-24 115.9 127 55.9
C08p00900 Brassica napus HOM05D002279 ORTHO05D002644 6.8e-24 114.8 129 55.0
Aa31LG1G20760 Aethionema arabicum HOM05D002279 ORTHO05D002644 2.0e-23 113.2 124 57.3
BraA08t35610Z Brassica rapa HOM05D002279 ORTHO05D002644 2.6e-23 112.8 129 54.3
A08p37110 Brassica napus HOM05D002279 ORTHO05D002644 1.3e-22 110.5 129 53.5
Thhalv10003154m.g Eutrema salsugineum HOM05D002279 ORTHO05D002644 3.5e-20 102.4 119 54.6
Aa31LG5G3310 Aethionema arabicum HOM05D002279 ORTHO05D002644 6.6e-19 98.2 102 57.8
Lalb_Chr01g0019501 Lupinus albus HOM05D002279 ORTHO05D002644 4.3e-18 95.5 125 48.0
Actinidia23696 Actinidia chinensis HOM05D002279 ORTHO05D002644 2.1e-17 93.2 124 43.5
Duzib211G0092 Durio zibethinus HOM05D002279 ORTHO05D002644 3.6e-17 92.4 125 47.2
SGA_v2.0_scaffold138G35188 Striga asiatica HOM05D002279 ORTHO05D002644 4.7e-17 92.0 111 50.5
Atru.chr5.1840 Acer truncatum HOM05D002279 ORTHO05D002644 6.2e-17 91.7 129 44.2
Cpa.g.sc87.24 Carica papaya HOM05D002279 ORTHO05D002644 8.1e-17 91.3 126 47.6
GSVIVG01028423001 Vitis vinifera HOM05D002279 ORTHO05D002644 8.1e-17 91.3 127 46.5
Gorai.001G237700 Gossypium raimondii HOM05D002279 ORTHO05D002644 1.4e-16 90.5 129 46.5
TAR365G0294 Trochodendron aralioides HOM05D002279 ORTHO05D002644 1.4e-16 90.5 125 45.6
Dinv16397 Davidia involucrata HOM05D002279 ORTHO05D002644 1.8e-16 90.1 124 45.2
Gohir.D07G210300 Gossypium hirsutum HOM05D002279 ORTHO05D002644 1.8e-16 90.1 129 46.5
BcaC07g36934 Brassica carinata HOM05D002279 ORTHO05D002644 2.3e-16 89.7 62 75.8
Thecc.01G250900 Theobroma cacao HOM05D002279 ORTHO05D002644 2.3e-16 89.7 129 45.7
Lalb_Chr20g0113641 Lupinus albus HOM05D002279 ORTHO05D002644 3.1e-16 89.4 125 45.6
Gohir.A07G204300 Gossypium hirsutum HOM05D002279 ORTHO05D002644 5.2e-16 88.6 131 45.0
Nitab4.5_0000845g0220 Nicotiana tabacum HOM05D002279 ORTHO05D002644 6.8e-16 88.2 124 46.0
Atru.chr1.1182 Acer truncatum HOM05D002279 ORTHO05D002644 2.0e-15 86.7 115 47.8
Gohir.D07G158300 Gossypium hirsutum HOM05D002279 ORTHO05D002644 2.6e-15 86.3 129 45.0
Lj1g0017598 Lotus japonicus HOM05D002279 ORTHO05D002644 2.6e-15 86.3 125 43.2
Manes.13G040100 Manihot esculenta HOM05D002279 ORTHO05D002644 2.6e-15 86.3 123 45.5
Cfa002480 Carpinus fangiana HOM05D002279 ORTHO05D002644 3.4e-15 85.9 126 44.4
Dinv34672 Davidia involucrata HOM05D002279 ORTHO05D002644 3.4e-15 85.9 127 45.7
Duzib133G0328 Durio zibethinus HOM05D002279 ORTHO05D002644 3.4e-15 85.9 129 44.2
PSO017G4536 Papaver somniferum HOM05D002279 ORTHO05D002644 3.4e-15 85.9 127 45.7
QL09p041332 Quercus lobata HOM05D002279 ORTHO05D002644 3.4e-15 85.9 127 43.3
Gorai.007G149700 Gossypium raimondii HOM05D002279 ORTHO05D002644 4.4e-15 85.5 125 44.8
PSO063G2201 Papaver somniferum HOM05D002279 ORTHO05D002644 5.8e-15 85.1 126 44.4
Psat1g077920 Pisum sativum HOM05D002279 ORTHO05D002644 5.8e-15 85.1 123 45.5
Psat1g078680 Pisum sativum HOM05D002279 ORTHO05D002644 5.8e-15 85.1 123 45.5
Ciclev10018866m.g Citrus clementina HOM05D002279 ORTHO05D002644 7.6e-15 84.7 120 50.0
Nitab4.5_0007760g0020 Nicotiana tabacum HOM05D002279 ORTHO05D002644 9.9e-15 84.3 124 44.4
Gorai.001G181500 Gossypium raimondii HOM05D002279 ORTHO05D002644 1.3e-14 84.0 127 45.7
MD00G1060100 Malus domestica HOM05D002279 ORTHO05D002644 2.2e-14 83.2 129 44.2
CiPaw.03G270500 Carya illinoinensis HOM05D002279 ORTHO05D002644 2.9e-14 82.8 126 42.9
Gohir.D11G139400 Gossypium hirsutum HOM05D002279 ORTHO05D002644 2.9e-14 82.8 125 44.0
Hma1.2p1_0273F.1_g109230 Hydrangea macrophylla HOM05D002279 ORTHO05D002644 3.7e-14 82.4 123 44.7
Prupe.8G215900 Prunus persica HOM05D002279 ORTHO05D002644 4.9e-14 82.0 127 42.5
Sabra02G0195500 Salix brachista HOM05D002279 ORTHO05D002644 4.9e-14 82.0 127 44.9
VMungo1383G2023 Vigna mungo HOM05D002279 ORTHO05D002644 4.9e-14 82.0 124 43.5
CANSAT01G3007 Cannabis sativa HOM05D002279 ORTHO05D002644 6.4e-14 81.6 132 43.2
Migut.D00473 Erythranthe guttata HOM05D002279 ORTHO05D002644 6.4e-14 81.6 121 44.6
MD05G1189300 Malus domestica HOM05D002279 ORTHO05D002644 6.4e-14 81.6 129 45.0
Glyma.03G167000 Glycine max HOM05D002279 ORTHO05D002644 8.4e-14 81.3 125 42.4
Glyma.19G168100 Glycine max HOM05D002279 ORTHO05D002644 8.4e-14 81.3 125 42.4
TWI18G0730 Tripterygium wilfordii HOM05D002279 ORTHO05D002644 8.4e-14 81.3 127 40.9
Gohir.A11G133300 Gossypium hirsutum HOM05D002279 ORTHO05D002644 1.1e-13 80.9 125 43.2
Oeu052078.1 Olea europaea HOM05D002279 ORTHO05D002644 1.1e-13 80.9 117 42.7
Hund05483 Selenicereus undatus HOM05D002279 ORTHO05D002644 1.1e-13 80.9 120 48.3
FvH4_2g20550 Fragaria vesca HOM05D002279 ORTHO05D002644 1.4e-13 80.5 125 47.2
FAN24G2116 Fragaria x ananassa HOM05D002279 ORTHO05D002644 1.4e-13 80.5 125 47.2
SGA_v2.0_scaffold1G00650 Striga asiatica HOM05D002279 ORTHO05D002644 1.4e-13 80.5 123 43.9
TWI12G1034 Tripterygium wilfordii HOM05D002279 ORTHO05D002644 1.9e-13 80.1 127 40.9
FAN27G1575 Fragaria x ananassa HOM05D002279 ORTHO05D002644 2.4e-13 79.7 121 46.3
Phvul.001G164500 Phaseolus vulgaris HOM05D002279 ORTHO05D002644 2.4e-13 79.7 124 41.9
arahy.Tifrunner.gnm1.ann1.CGPP17 Arachis hypogaea HOM05D002279 ORTHO05D002644 3.2e-13 79.3 123 46.3
arahy.Tifrunner.gnm1.ann1.UG1CCZ Arachis hypogaea HOM05D002279 ORTHO05D002644 3.2e-13 79.3 123 46.3
Medtr7g098430 Medicago truncatula HOM05D002279 ORTHO05D002644 3.2e-13 79.3 128 42.2
Nn3g19779 Nelumbo nucifera HOM05D002279 ORTHO05D002644 3.2e-13 79.3 124 43.5
Potri.002G257100 Populus trichocarpa HOM05D002279 ORTHO05D002644 3.2e-13 79.3 127 45.7
TPR.G20054 Trifolium pratense HOM05D002279 ORTHO05D002644 3.2e-13 79.3 125 43.2
VMungo0647G0533 Vigna mungo HOM05D002279 ORTHO05D027816 3.2e-13 79.3 110 46.4
Actinidia37548 Actinidia chinensis HOM05D002279 ORTHO05D002644 4.1e-13 79.0 142 37.3
AUR62025445 Chenopodium quinoa HOM05D002279 ORTHO05D002644 4.1e-13 79.0 120 45.8
CsaV3_6G007400 Cucumis sativus L. HOM05D002279 ORTHO05D002644 4.1e-13 79.0 122 42.6
Aqoxy2G03747 Aquilegia oxysepala HOM05D002279 ORTHO05D002644 5.4e-13 78.6 126 42.1
Ca_08738_v3 Cicer arietinum L. HOM05D002279 ORTHO05D002644 5.4e-13 78.6 124 43.5
MBI10_g26043_MAGBIO Magnolia biondii HOM05D002279 ORTHO05D002644 5.4e-13 78.6 122 41.8
RcHm_v2.0_Chr6g0286711 Rosa chinensis HOM05D002279 ORTHO05D002644 5.4e-13 78.6 100 54.0
Oeu015430.1 Olea europaea HOM05D002279 ORTHO05D002644 7.1e-13 78.2 125 43.2
Actinidia30129 Actinidia chinensis HOM05D002279 ORTHO05D002644 9.2e-13 77.8 126 39.7
CiPaw.04G190300 Carya illinoinensis HOM05D002279 ORTHO05D002644 1.2e-12 77.4 126 42.9
MELO3C022388.2 Cucumis melo HOM05D002279 ORTHO05D002644 1.2e-12 77.4 122 41.8
Peaxi162Scf00043g02923 Petunia axillaris HOM05D002279 ORTHO05D002644 1.6e-12 77.0 119 42.9
unitig_22.g6301 Utricularia gibba HOM05D002279 ORTHO05D002644 1.6e-12 77.0 116 44.8
AUR62008790 Chenopodium quinoa HOM05D002279 ORTHO05D002644 2.7e-12 76.3 79 54.4
Psat3g055080 Pisum sativum HOM05D002279 ORTHO05D002644 3.5e-12 75.9 104 48.1
Ah.08g218250 Amaranthus hybridus HOM05D002279 ORTHO05D002644 6.0e-12 75.1 120 45.0
ATR0787G201 Amborella trichopoda HOM05D002279 ORTHO05D002644 6.0e-12 75.1 122 43.4
Sc24g0003670 Simmondsia chinensis HOM05D002279 ORTHO05D002644 6.0e-12 75.1 109 45.9
CAN.G536.17 Capsicum annuum HOM05D002279 ORTHO05D002644 7.8e-12 74.7 121 41.3
EL10Ac7g17680 Beta vulgaris HOM05D002279 ORTHO05D002644 1.0e-11 74.3 139 41.0
ClCG06G001450 Citrullus lanatus HOM05D002279 ORTHO05D002644 1.3e-11 73.9 99 49.5
Sed0023704 Sechium edule HOM05D002279 ORTHO05D002644 1.3e-11 73.9 99 48.5
vmacro14798 Vaccinium macrocarpon HOM05D002279 ORTHO05D002644 1.3e-11 73.9 141 38.3
VMungo0464G1959 Vigna mungo HOM05D002279 ORTHO05D027816 1.7e-11 73.6 79 54.4
Aqoxy7G02303 Aquilegia oxysepala HOM05D002279 ORTHO05D002644 2.3e-11 73.2 81 53.1
Sopen09g025760 Solanum pennellii HOM05D002279 ORTHO05D002644 6.6e-11 71.6 121 42.1
ECA248G1198 Erigeron canadensis HOM05D002279 ORTHO05D002644 1.5e-10 70.5 125 40.0
Lsat_1_v5_gn_5_181380 Lactuca sativa HOM05D002279 ORTHO05D002644 1.5e-10 70.5 113 40.7
Nn1g02962 Nelumbo nucifera HOM05D002279 ORTHO05D002644 1.5e-10 70.5 127 40.9
unitig_8.g3073 Utricularia gibba HOM05D002279 ORTHO05D002644 1.5e-10 70.5 121 40.5
Hma1.2p1_1930F.1_g307920 Hydrangea macrophylla HOM05D002279 ORTHO05D002644 3.3e-10 69.3 86 51.2
THA.LOC104801556 Tarenaya hassleriana HOM05D002279 ORTHO05D002644 4.3e-10 68.9 47 72.3
Gohir.A07G152100 Gossypium hirsutum HOM05D002279 ORTHO05D002644 5.6e-10 68.6 57 61.4
HanXRQChr01g0015001 Helianthus annuus HOM05D002279 ORTHO05D002644 5.6e-10 68.6 123 42.3
Potri.014G192800 Populus trichocarpa HOM05D002279 ORTHO05D002644 5.6e-10 68.6 93 51.6
CDE05G3533 Ceratophyllum demersum HOM05D002279 ORTHO05D002644 7.3e-10 68.2 81 44.4
TAR636G1664 Trochodendron aralioides HOM05D002279 ORTHO05D002644 7.3e-10 68.2 81 51.9
Sp2g08790 Schrenkiella parvula HOM05D002279 ORTHO05D002644 9.6e-10 67.8 85 50.6
Lj2A1143T49 Lonicera japonica HOM05D002279 ORTHO05D002644 2.8e-09 66.2 127 40.9
DCAR_004690 Daucus carota HOM05D002279 ORTHO05D002644 3.6e-09 65.9 123 42.3
Cc01_g17830 Coffea canephora HOM05D002279 ORTHO05D002644 1.8e-08 63.5 92 47.8
HPP92_019939 Vanilla planifolia HOM05D002279 ORTHO05D002644 3.1e-08 62.8 118 40.7
HPP92_021812 Vanilla planifolia HOM05D002279 ORTHO05D002644 6.8e-08 61.6 118 39.0
MBI07_g23231_MAGBIO Magnolia biondii HOM05D002279 ORTHO05D002644 8.9e-08 61.2 93 47.3
PGR119G1284 Punica granatum HOM05D002279 ORTHO05D002644 8.9e-08 61.2 123 39.0
Lj1C73G6 Lonicera japonica HOM05D002279 ORTHO05D002644 1.2e-07 60.8 131 36.6
SEGI_33332 Sequoiadendron giganteum HOM05D002279 ORTHO05D002644 2.6e-07 59.7 99 38.4
Os03g0210400 Oryza sativa ssp. japonica HOM05D002279 ORTHO05D002644 5.8e-07 58.5 111 37.8
CSS0038534 Camellia sinensis var. sinensis HOM05D002279 ORTHO05D002644 2.2e-06 56.6 116 37.9


User provided reference genes

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