Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p27380 Brassica napus HOM05D000233 ORTHO05D000020 1.9e-69 265.8 136 100.0
BolC5t31449H Brassica oleracea HOM05D000233 ORTHO05D000020 1.9e-69 265.8 136 100.0
BcaC05g26854 Brassica carinata HOM05D000233 ORTHO05D000020 9.9e-63 243.4 147 88.4
A09p37680 Brassica napus HOM05D000233 ORTHO05D000020 1.7e-59 232.6 159 80.5
BraA09t39279Z Brassica rapa HOM05D000233 ORTHO05D000020 5.1e-59 231.1 159 79.9
BcaB07g32455 Brassica carinata HOM05D000233 ORTHO05D000020 2.2e-46 189.1 134 79.1
BcaB07g32456 Brassica carinata HOM05D000233 ORTHO05D000020 4.5e-39 164.9 162 61.1
C05p27390 Brassica napus HOM05D000233 ORTHO05D000020 4.5e-39 164.9 161 62.1
BolC5t31450H Brassica oleracea HOM05D000233 ORTHO05D000020 4.5e-39 164.9 161 62.1
BcaC05g26855 Brassica carinata HOM05D000233 ORTHO05D000020 7.6e-39 164.1 161 62.1
A09p37670 Brassica napus HOM05D000233 ORTHO05D000020 1.9e-34 149.4 162 58.0
BraA09t39278Z Brassica rapa HOM05D000233 ORTHO05D000020 1.9e-34 149.4 162 58.0
A08p25650 Brassica napus HOM05D000233 ORTHO05D000020 7.4e-34 147.5 170 55.9
BraA08t34515Z Brassica rapa HOM05D000233 ORTHO05D000020 7.4e-34 147.5 170 55.9
BcaC01g00040 Brassica carinata HOM05D000233 ORTHO05D000020 1.5e-31 139.8 170 53.5
C03p75060 Brassica napus HOM05D000233 ORTHO05D000020 1.5e-31 139.8 170 53.5
BolC3t19761H Brassica oleracea HOM05D000233 ORTHO05D000020 1.5e-31 139.8 170 53.5
A07p11240 Brassica napus HOM05D000233 ORTHO05D000020 4.5e-31 138.3 167 54.5
BraA07t28917Z Brassica rapa HOM05D000233 ORTHO05D000020 4.5e-31 138.3 167 54.5
Sp1g24610 Schrenkiella parvula HOM05D000233 ORTHO05D000020 7.6e-31 137.5 168 56.5
C07p17000 Brassica napus HOM05D000233 ORTHO05D000020 2.2e-30 136.0 167 53.9
BolC7t42203H Brassica oleracea HOM05D000233 ORTHO05D000020 2.2e-30 136.0 167 53.9
BcaC06g35358 Brassica carinata HOM05D000233 ORTHO05D000020 1.1e-29 133.7 167 53.3
Sp1g24620 Schrenkiella parvula HOM05D000233 ORTHO05D000020 2.7e-28 129.0 168 54.8
BcaB03g13931 Brassica carinata HOM05D000233 ORTHO05D000020 6.0e-28 127.9 168 52.4
BcaB03g12111 Brassica carinata HOM05D000233 ORTHO05D000020 1.3e-27 126.7 167 52.7
AL1G41980 Arabidopsis lyrata HOM05D000233 ORTHO05D000020 6.9e-24 114.4 169 50.9
AT1G28370 Arabidopsis thaliana HOM05D000233 ORTHO05D000020 4.5e-23 111.7 168 49.4
Carub.0001s2683 Capsella rubella HOM05D000233 ORTHO05D000020 2.7e-20 102.4 168 47.0
Aa31LG6G10390 Aethionema arabicum HOM05D000233 ORTHO05D000020 7.2e-13 77.8 187 39.6
Lalb_Chr19g0134101 Lupinus albus HOM05D000233 ORTHO05D000020 1.8e-11 73.2 179 38.5
Phvul.006G183100 Phaseolus vulgaris HOM05D000233 ORTHO05D000020 9.7e-10 67.4 98 50.0
Phvul.011G162900 Phaseolus vulgaris HOM05D000233 ORTHO05D000020 9.7e-10 67.4 190 36.3
VMungo1127G2184 Vigna mungo HOM05D000233 ORTHO05D000020 2.8e-09 65.9 192 34.9
Glyma.12G162700 Glycine max HOM05D000233 ORTHO05D000020 3.7e-09 65.5 188 35.1
Lalb_Chr20g0109521 Lupinus albus HOM05D000233 ORTHO05D000020 6.3e-09 64.7 189 34.4
VMungo0540G1794 Vigna mungo HOM05D000233 ORTHO05D000020 6.3e-09 64.7 99 49.5
Rhsim06G0138500 Rhododendron simsii HOM05D000233 ORTHO05D000020 8.2e-09 64.3 103 47.6
Atru.chr6.2945 Acer truncatum HOM05D000233 ORTHO05D000020 1.1e-08 63.9 98 45.9
CiPaw.09G062700 Carya illinoinensis HOM05D000233 ORTHO05D000020 1.1e-08 63.9 104 45.2
ClCG03G008040 Citrullus lanatus HOM05D000233 ORTHO05D000020 1.4e-08 63.5 200 35.5
CARHR027860 Cardamine hirsuta HOM05D000233 ORTHO05D000020 1.8e-08 63.2 169 36.7
Glyma.13G236500 Glycine max HOM05D000233 ORTHO05D000020 1.8e-08 63.2 101 46.5
CsaV3_1G012520 Cucumis sativus L. HOM05D000233 ORTHO05D000020 2.4e-08 62.8 207 33.8
Sed0018570 Sechium edule HOM05D000233 ORTHO05D000020 2.4e-08 62.8 153 36.6
TWI38G0276 Tripterygium wilfordii HOM05D000233 ORTHO05D000020 2.4e-08 62.8 86 46.5
CiPaw.10G051900 Carya illinoinensis HOM05D000233 ORTHO05D000020 3.1e-08 62.4 157 38.2
Glyma.06G236400 Glycine max HOM05D000233 ORTHO05D000020 3.1e-08 62.4 164 37.2
Gohir.D09G073000 Gossypium hirsutum HOM05D000233 ORTHO05D000020 3.1e-08 62.4 116 43.1
Manes.13G143500 Manihot esculenta HOM05D000233 ORTHO05D000020 4.1e-08 62.0 107 43.9
Medtr2g078680 Medicago truncatula HOM05D000233 ORTHO05D000020 4.1e-08 62.0 82 48.8
Sed0003131 Sechium edule HOM05D000233 ORTHO05D000020 7.0e-08 61.2 167 35.3
GSVIVG01014291001 Vitis vinifera HOM05D000233 ORTHO05D000020 7.0e-08 61.2 90 47.8
Haze_13217 Corylus avellana HOM05D000233 ORTHO05D000020 9.1e-08 60.8 92 47.8
Lj6g0002594 Lotus japonicus HOM05D000233 ORTHO05D000020 9.1e-08 60.8 127 42.5
Manes.16G030600 Manihot esculenta HOM05D000233 ORTHO05D000020 9.1e-08 60.8 245 31.8
Peaxi162Scf00845g00023 Petunia axillaris HOM05D000233 ORTHO05D000020 9.1e-08 60.8 105 43.8
SGA_v2.0_scaffold34G13936 Striga asiatica HOM05D000233 ORTHO05D000020 9.1e-08 60.8 98 46.9
TWI38G1607 Tripterygium wilfordii HOM05D000233 ORTHO05D000020 9.1e-08 60.8 149 37.6
Ca_18927_v3 Cicer arietinum L. HOM05D000233 ORTHO05D000020 1.2e-07 60.5 126 38.9
Gohir.A06G211300 Gossypium hirsutum HOM05D000233 ORTHO05D000020 1.2e-07 60.5 111 42.3
Gohir.D06G209900 Gossypium hirsutum HOM05D000233 ORTHO05D000020 1.2e-07 60.5 111 42.3
Lj8P108T38 Lonicera japonica HOM05D000233 ORTHO05D000020 1.2e-07 60.5 103 43.7
Sabra11G0038900 Salix brachista HOM05D000233 ORTHO05D000020 1.2e-07 60.5 223 31.4
MSTRG.15858 Avicennia marina HOM05D000233 ORTHO05D000020 1.5e-07 60.1 96 44.8
Haze_13214 Corylus avellana HOM05D000233 ORTHO05D000020 1.5e-07 60.1 86 48.8
Glyma.15G077100 Glycine max HOM05D000233 ORTHO05D000020 1.5e-07 60.1 96 46.9
THA.LOC104810459 Tarenaya hassleriana HOM05D000233 ORTHO05D000020 1.5e-07 60.1 162 35.8
Gorai.010G256600 Gossypium raimondii HOM05D000233 ORTHO05D000020 2.0e-07 59.7 111 42.3
A08p01780 Brassica napus HOM05D000233 ORTHO05D000020 2.6e-07 59.3 176 34.1
BraA08t32232Z Brassica rapa HOM05D000233 ORTHO05D000020 2.6e-07 59.3 176 34.1
CDE07G0978 Ceratophyllum demersum HOM05D000233 ORTHO05D000020 2.6e-07 59.3 169 36.1
Glyma.12G226600 Glycine max HOM05D000233 ORTHO05D000020 2.6e-07 59.3 85 49.4
Nn1g04200 Nelumbo nucifera HOM05D000233 ORTHO05D000020 2.6e-07 59.3 86 47.7
Nn1g04182 Nelumbo nucifera HOM05D000233 ORTHO05D000020 3.4e-07 58.9 101 44.6
TWI38G0114 Tripterygium wilfordii HOM05D000233 ORTHO05D000020 3.4e-07 58.9 98 43.9
Manes.17G048400 Manihot esculenta HOM05D000233 ORTHO05D000020 4.5e-07 58.5 241 31.5
TWI38G0622 Tripterygium wilfordii HOM05D000233 ORTHO05D000020 4.5e-07 58.5 152 36.8
TWI39G0756 Tripterygium wilfordii HOM05D000233 ORTHO05D000020 4.5e-07 58.5 87 43.7
ClCG01G023170 Citrullus lanatus HOM05D000233 ORTHO05D000020 5.9e-07 58.2 108 42.6
Cc05_g07590 Coffea canephora HOM05D000233 ORTHO05D000020 5.9e-07 58.2 99 44.4
MELO3C007267.2 Cucumis melo HOM05D000233 ORTHO05D000020 5.9e-07 58.2 108 42.6
Lalb_Chr18g0059431 Lupinus albus HOM05D000233 ORTHO05D000020 5.9e-07 58.2 98 42.9
Lalb_Chr20g0121621 Lupinus albus HOM05D000233 ORTHO05D000020 5.9e-07 58.2 145 36.6
Nn1g06445 Nelumbo nucifera HOM05D000233 ORTHO05D000020 5.9e-07 58.2 82 48.8
Psat7g167840 Pisum sativum HOM05D000233 ORTHO05D000020 5.9e-07 58.2 128 37.5
TPR.G22651 Trifolium pratense HOM05D000233 ORTHO05D000020 5.9e-07 58.2 122 40.2
CANSAT35G0610 Cannabis sativa HOM05D000233 ORTHO05D000020 7.7e-07 57.8 118 41.5
ClCG07G002550 Citrullus lanatus HOM05D000233 ORTHO05D000020 7.7e-07 57.8 108 42.6
Hma1.2p1_1411F.1_g281750 Hydrangea macrophylla HOM05D000233 ORTHO05D000020 7.7e-07 57.8 104 45.2
Lalb_Chr03g0030771 Lupinus albus HOM05D000233 ORTHO05D000020 7.7e-07 57.8 195 32.8
Medtr4g078710 Medicago truncatula HOM05D000233 ORTHO05D000020 7.7e-07 57.8 119 40.3
Oeu036076.1 Olea europaea HOM05D000233 ORTHO05D000020 7.7e-07 57.8 106 44.3
Rhsim04G0022500 Rhododendron simsii HOM05D000233 ORTHO05D000020 7.7e-07 57.8 118 41.5
TAR624G1334 Trochodendron aralioides HOM05D000233 ORTHO05D000020 7.7e-07 57.8 100 43.0
unitig_746.g26678 Utricularia gibba HOM05D000233 ORTHO05D000020 7.7e-07 57.8 97 44.3
MELO3C002624.2 Cucumis melo HOM05D000233 ORTHO05D000020 1.0e-06 57.4 132 40.9
CsaV3_6G050320 Cucumis sativus L. HOM05D000233 ORTHO05D000020 1.0e-06 57.4 105 41.9
Nitab4.5_0003076g0060 Nicotiana tabacum HOM05D000233 ORTHO05D000020 1.0e-06 57.4 88 45.5
Nitab4.5_0009934g0010 Nicotiana tabacum HOM05D000233 ORTHO05D000020 1.0e-06 57.4 107 42.1
Psat0ss4650g0040 Pisum sativum HOM05D000233 ORTHO05D000020 1.0e-06 57.4 87 46.0
BcaC03g16644 Brassica carinata HOM05D000233 ORTHO05D000020 1.3e-06 57.0 122 37.7
C02p44770 Brassica napus HOM05D000233 ORTHO05D000020 1.3e-06 57.0 122 37.7
CSS0012522 Camellia sinensis var. sinensis HOM05D000233 ORTHO05D000020 1.3e-06 57.0 105 42.9
CAN.G189.53 Capsicum annuum HOM05D000233 ORTHO05D000020 1.3e-06 57.0 113 37.2
MD05G1311400 Malus domestica HOM05D000233 ORTHO05D000020 1.3e-06 57.0 85 44.7
Medtr5g085130 Medicago truncatula HOM05D000233 ORTHO05D000020 1.3e-06 57.0 156 32.1
QL08p022832 Quercus lobata HOM05D000233 ORTHO05D000020 1.3e-06 57.0 85 47.1
Sed0027869 Sechium edule HOM05D000233 ORTHO05D000020 1.3e-06 57.0 96 45.8
PGSC0003DMG400026821 Solanum tuberosum HOM05D000233 ORTHO05D000020 1.3e-06 57.0 148 34.5
Atru.chr10.1810 Acer truncatum HOM05D000233 ORTHO05D000020 1.7e-06 56.6 88 45.5
BolC2t10520H Brassica oleracea HOM05D000233 ORTHO05D000020 1.7e-06 56.6 122 37.7
Cfa014648 Carpinus fangiana HOM05D000233 ORTHO05D000020 1.7e-06 56.6 92 45.7
AUR62014855 Chenopodium quinoa HOM05D000233 ORTHO05D000020 1.7e-06 56.6 97 42.3
Ca_00355_v3 Cicer arietinum L. HOM05D000233 ORTHO05D000020 1.7e-06 56.6 109 41.3
Lj1P712T38 Lonicera japonica HOM05D000233 ORTHO05D000020 1.7e-06 56.6 155 35.5
Peaxi162Scf00031g00144 Petunia axillaris HOM05D000233 ORTHO05D000020 1.7e-06 56.6 222 30.6
TWI63G0099 Tripterygium wilfordii HOM05D000233 ORTHO05D000020 1.7e-06 56.6 150 36.0
Actinidia07597 Actinidia chinensis HOM05D000233 ORTHO05D000020 2.2e-06 56.2 83 47.0
BraA02t07863Z Brassica rapa HOM05D000233 ORTHO05D000020 2.2e-06 56.2 122 37.7
CANSAT64G1422 Cannabis sativa HOM05D000233 ORTHO05D000020 2.2e-06 56.2 94 46.8
Ciclev10009484m.g Citrus clementina HOM05D000233 ORTHO05D000020 2.2e-06 56.2 90 45.6
Sed0019113 Sechium edule HOM05D000233 ORTHO05D000020 2.2e-06 56.2 97 44.3
Solyc10g009110.1 Solanum lycopersicum HOM05D000233 ORTHO05D000020 2.2e-06 56.2 110 39.1
TAR627G0411 Trochodendron aralioides HOM05D000233 ORTHO05D000020 2.2e-06 56.2 89 43.8
unitig_62.g23328 Utricularia gibba HOM05D000233 ORTHO05D000020 2.2e-06 56.2 112 41.1
A02p28280 Brassica napus HOM05D000233 ORTHO05D000020 2.9e-06 55.8 122 37.7
BolC3t21433H Brassica oleracea HOM05D000233 ORTHO05D000020 2.9e-06 55.8 177 34.5
Dinv06871 Davidia involucrata HOM05D000233 ORTHO05D000020 2.9e-06 55.8 101 43.6
Duzib213G0669 Durio zibethinus HOM05D000233 ORTHO05D000020 2.9e-06 55.8 88 46.6
Gohir.A04G035500 Gossypium hirsutum HOM05D000233 ORTHO05D000020 2.9e-06 55.8 88 46.6
PGR083G1619 Punica granatum HOM05D000233 ORTHO05D000020 2.9e-06 55.8 95 45.3
CDE02G4765 Ceratophyllum demersum HOM05D000233 ORTHO05D000020 3.8e-06 55.5 91 44.0
Potri.007G138100 Populus trichocarpa HOM05D000233 ORTHO05D000020 3.8e-06 55.5 98 41.8
SEGI_03082 Sequoiadendron giganteum HOM05D000233 ORTHO05D000020 3.8e-06 55.5 81 48.1
TPR.G35959 Trifolium pratense HOM05D000233 ORTHO05D000020 3.8e-06 55.5 88 44.3
Actinidia35241 Actinidia chinensis HOM05D000233 ORTHO05D000020 5.0e-06 55.1 105 41.0
BcaC01g01363 Brassica carinata HOM05D000233 ORTHO05D000020 5.0e-06 55.1 176 33.0
CAN.G209.24 Capsicum annuum HOM05D000233 ORTHO05D000020 5.0e-06 55.1 103 40.8
COL.COLO4_36716 Corchorus olitorius HOM05D000233 ORTHO05D000020 5.0e-06 55.1 87 47.1
Medtr2g014340 Medicago truncatula HOM05D000233 ORTHO05D000020 5.0e-06 55.1 92 44.6
Ah.14g089660 Amaranthus hybridus HOM05D000233 ORTHO05D000020 6.5e-06 54.7 143 33.6
AT1G53170 Arabidopsis thaliana HOM05D000233 ORTHO05D000020 6.5e-06 54.7 170 34.1
Dinv17342 Davidia involucrata HOM05D000233 ORTHO05D000020 6.5e-06 54.7 97 43.3
Gohir.D05G347900 Gossypium hirsutum HOM05D000233 ORTHO05D000020 6.5e-06 54.7 106 43.4
Gorai.009G375700 Gossypium raimondii HOM05D000233 ORTHO05D000020 6.5e-06 54.7 106 43.4
Sabra17G0045700 Salix brachista HOM05D000233 ORTHO05D000020 6.5e-06 54.7 105 36.2
Sed0015263 Sechium edule HOM05D000233 ORTHO05D000020 6.5e-06 54.7 86 45.3
Thecc.06G182600 Theobroma cacao HOM05D000233 ORTHO05D000020 6.5e-06 54.7 78 47.4
TAR626G0716 Trochodendron aralioides HOM05D000233 ORTHO05D000020 6.5e-06 54.7 97 40.2
Carub.0001s4234 Capsella rubella HOM05D000233 ORTHO05D000020 8.5e-06 54.3 179 34.1
Cpa.g.sc83.80 Carica papaya HOM05D000233 ORTHO05D000020 8.5e-06 54.3 106 42.5
Haze_09455 Corylus avellana HOM05D000233 ORTHO05D000020 8.5e-06 54.3 203 31.5
Migut.M01116 Erythranthe guttata HOM05D000233 ORTHO05D000020 8.5e-06 54.3 114 39.5
Glyma.02G267400 Glycine max HOM05D000233 ORTHO05D000020 8.5e-06 54.3 193 30.6
Phvul.008G214700 Phaseolus vulgaris HOM05D000233 ORTHO05D000020 8.5e-06 54.3 187 32.1
Solyc03g006320.1 Solanum lycopersicum HOM05D000233 ORTHO05D000020 8.5e-06 54.3 83 45.8
Sopen03g002330 Solanum pennellii HOM05D000233 ORTHO05D000020 8.5e-06 54.3 83 45.8


User provided reference genes

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