Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p12710 Brassica napus HOM05D007672 ORTHO05D009617 2.0e-71 272.3 138 100.0
BolC5t30015H Brassica oleracea HOM05D007672 ORTHO05D009617 3.2e-69 265.0 138 97.8
BcaC05g25394 Brassica carinata HOM05D007672 ORTHO05D009617 2.7e-68 261.9 136 97.8
A06p10820 Brassica napus HOM05D007672 ORTHO05D009617 1.2e-60 236.5 142 87.3
BraA06t24260Z Brassica rapa HOM05D007672 ORTHO05D009617 1.2e-60 236.5 141 87.9
Carub.0001s1456 Capsella rubella HOM05D007672 ORTHO05D009617 6.5e-54 214.2 141 79.4
Sp1g13200 Schrenkiella parvula HOM05D007672 ORTHO05D009617 1.9e-53 212.6 140 80.7
AL1G26790 Arabidopsis lyrata HOM05D007672 ORTHO05D009617 7.2e-53 210.7 139 79.1
CARHR015300 Cardamine hirsuta HOM05D007672 ORTHO05D009617 4.7e-52 208.0 142 76.1
Thhalv10009881m.g Eutrema salsugineum HOM05D007672 ORTHO05D009617 1.5e-45 186.4 140 72.9
C08p45430 Brassica napus HOM05D007672 ORTHO05D009617 1.5e-42 176.4 138 71.0
BolC8t52097H Brassica oleracea HOM05D007672 ORTHO05D009617 7.5e-42 174.1 138 70.3
A09p61810 Brassica napus HOM05D007672 ORTHO05D009617 1.0e-38 163.7 138 67.4
BraA09t41549Z Brassica rapa HOM05D007672 ORTHO05D009617 1.0e-38 163.7 138 67.4
BcaC07g41540 Brassica carinata HOM05D007672 ORTHO05D009617 1.5e-37 159.8 114 73.7
Aa31LG1G330 Aethionema arabicum HOM05D007672 ORTHO05D009617 2.1e-36 156.0 137 62.8
AT1G14760 Arabidopsis thaliana HOM05D007672 ORTHO05D009617 1.1e-32 143.7 97 79.4
THA.LOC104823640 Tarenaya hassleriana HOM05D007672 ORTHO05D009617 1.5e-29 133.3 138 57.2
THA.LOC104805091 Tarenaya hassleriana HOM05D007672 ORTHO05D009617 1.7e-25 119.8 129 55.0
Actinidia36615 Actinidia chinensis HOM05D007672 ORTHO05D009617 1.4e-19 100.1 109 49.5
Hma1.2p1_0940F.1_g239540 Hydrangea macrophylla HOM05D007672 ORTHO05D009617 9.8e-18 94.0 124 45.2
Dinv32113 Davidia involucrata HOM05D007672 ORTHO05D009617 2.9e-17 92.4 118 44.1
Ciclev10017185m.g Citrus clementina HOM05D007672 ORTHO05D009617 3.7e-17 92.0 122 45.9
RcHm_v2.0_Chr4g0442631 Rosa chinensis HOM05D007672 ORTHO05D009617 3.7e-17 92.0 130 40.0
Oeu023512.1 Olea europaea HOM05D007672 ORTHO05D009617 6.4e-17 91.3 124 43.5
Nitab4.5_0000033g0200 Nicotiana tabacum HOM05D007672 ORTHO05D009617 1.9e-16 89.7 127 39.4
RcHm_v2.0_Chr7g0177981 Rosa chinensis HOM05D007672 ORTHO05D009617 4.1e-16 88.6 119 42.9
CiPaw.15G147200 Carya illinoinensis HOM05D007672 ORTHO05D009617 7.0e-16 87.8 122 44.3
Nitab4.5_0004855g0020 Nicotiana tabacum HOM05D007672 ORTHO05D009617 7.0e-16 87.8 122 40.2
Dinv06126 Davidia involucrata HOM05D008473 ORTHO05D009617 1.2e-15 87.0 97 50.5
FAN12G4179 Fragaria x ananassa HOM05D007672 ORTHO05D009617 1.2e-15 87.0 124 41.9
FvH4_4g33370 Fragaria vesca HOM05D007672 ORTHO05D009617 1.6e-15 86.7 124 41.9
Lalb_Chr22g0353431 Lupinus albus HOM05D007672 ORTHO05D009617 2.0e-15 86.3 111 42.3
CANSAT78G0487 Cannabis sativa HOM05D007672 ORTHO05D009617 2.7e-15 85.9 105 40.0
arahy.Tifrunner.gnm1.ann1.S28ZE3 Arachis hypogaea HOM05D007672 ORTHO05D009617 3.5e-15 85.5 118 42.4
Lj2g0012031 Lotus japonicus HOM05D007672 ORTHO05D009617 3.5e-15 85.5 116 43.1
FAN07G2452 Fragaria x ananassa HOM05D007672 ORTHO05D009617 4.6e-15 85.1 128 39.8
Prupe.1G335000 Prunus persica HOM05D007672 ORTHO05D009617 6.0e-15 84.7 125 40.0
Lalb_Chr14g0370701 Lupinus albus HOM05D007672 ORTHO05D009617 7.8e-15 84.3 134 38.1
Manes.15G136200 Manihot esculenta HOM05D007672 ORTHO05D009617 7.8e-15 84.3 130 40.8
arahy.Tifrunner.gnm1.ann1.00W5AZ Arachis hypogaea HOM05D007672 ORTHO05D009617 1.0e-14 84.0 118 41.5
SGA_v2.0_scaffold74G24688 Striga asiatica HOM05D007672 ORTHO05D009617 1.3e-14 83.6 117 39.3
FvH4_5g17670 Fragaria vesca HOM05D007672 ORTHO05D009617 1.7e-14 83.2 121 40.5
FAN18G0484 Fragaria x ananassa HOM05D007672 ORTHO05D009617 1.7e-14 83.2 121 40.5
Potri.012G043400 Populus trichocarpa HOM05D007672 ORTHO05D009617 1.7e-14 83.2 131 40.5
QL03p037604 Quercus lobata HOM05D007672 ORTHO05D009617 2.3e-14 82.8 132 40.2
Glyma.07G104800 Glycine max HOM05D007672 ORTHO05D009617 3.0e-14 82.4 111 43.2
Glyma.09G172851 Glycine max HOM05D007672 ORTHO05D009617 3.0e-14 82.4 111 43.2
Psat1g029600 Pisum sativum HOM05D007672 ORTHO05D009617 3.0e-14 82.4 111 42.3
MD14G1239200 Malus domestica HOM05D007672 ORTHO05D009617 3.9e-14 82.0 129 39.5
Manes.06G003100 Manihot esculenta HOM05D007672 ORTHO05D009617 3.9e-14 82.0 104 45.2
VMungo0464G2034 Vigna mungo HOM05D000162 ORTHO05D009617 3.9e-14 82.0 112 44.6
Migut.D01220 Erythranthe guttata HOM05D007672 ORTHO05D009617 8.6e-14 80.9 111 36.9
Phvul.004G148100 Phaseolus vulgaris HOM05D007672 ORTHO05D009617 8.6e-14 80.9 111 43.2
Medtr1g032750 Medicago truncatula HOM05D007672 ORTHO05D009617 1.1e-13 80.5 109 43.1
Medtr6g071190 Medicago truncatula HOM05D007672 ORTHO05D009617 1.5e-13 80.1 135 38.5
Phvul.003G016200 Phaseolus vulgaris HOM05D007672 ORTHO05D009617 1.5e-13 80.1 108 42.6
SalBow1G8131 Salvia bowleyana HOM05D007672 ORTHO05D009617 1.9e-13 79.7 107 38.3
TPR.G36851 Trifolium pratense HOM05D007672 ORTHO05D009617 1.9e-13 79.7 119 38.7
Haze_18912 Corylus avellana HOM05D007672 ORTHO05D009617 2.5e-13 79.3 117 40.2
Glyma.02G086400 Glycine max HOM05D007672 ORTHO05D009617 2.5e-13 79.3 114 41.2
Prupe.5G236700 Prunus persica HOM05D007672 ORTHO05D009617 3.3e-13 79.0 136 38.2
VMungo1215G2599 Vigna mungo HOM05D007672 ORTHO05D009617 3.3e-13 79.0 107 43.0
MD06G1232400 Malus domestica HOM05D007672 ORTHO05D009617 5.6e-13 78.2 131 41.2
FAN17G1984 Fragaria x ananassa HOM05D007672 ORTHO05D009617 7.3e-13 77.8 106 43.4
Glyma.07G172500 Glycine max HOM05D007672 ORTHO05D009617 7.3e-13 77.8 128 41.4
Peaxi162Scf01064g00027 Petunia axillaris HOM05D007672 ORTHO05D009617 7.3e-13 77.8 128 35.9
Lj2g0010633 Lotus japonicus HOM05D007672 ORTHO05D009617 9.5e-13 77.4 142 38.0
TWI15G1176 Tripterygium wilfordii HOM05D007672 ORTHO05D009617 9.5e-13 77.4 141 35.5
Manes.14G157000 Manihot esculenta HOM05D007672 ORTHO05D009617 1.2e-12 77.0 103 49.5
FAN04G1237 Fragaria x ananassa HOM05D007672 ORTHO05D009617 2.1e-12 76.3 121 39.7
FAN08G2449 Fragaria x ananassa HOM05D007672 ORTHO05D009617 2.1e-12 76.3 121 40.5
Thecc.03G062100 Theobroma cacao HOM05D007672 ORTHO05D009617 4.7e-12 75.1 102 44.1
Gorai.008G291600 Gossypium raimondii HOM05D007672 ORTHO05D009617 2.3e-11 72.8 106 40.6
Duzib068G1319 Durio zibethinus HOM05D007672 ORTHO05D009617 3.1e-11 72.4 133 38.3
Gohir.A12G270800 Gossypium hirsutum HOM05D007672 ORTHO05D009617 4.0e-11 72.0 106 40.6
Cpa.g.sc3.361 Carica papaya HOM05D000154 ORTHO05D000092 6.8e-11 71.2 141 34.8
CDE05G0014 Ceratophyllum demersum HOM05D007672 ORTHO05D009617 8.9e-11 70.9 123 39.0
PGR044G0098 Punica granatum HOM05D007672 ORTHO05D009617 8.9e-11 70.9 125 34.4
Gohir.D12G271200 Gossypium hirsutum HOM05D007672 ORTHO05D009617 1.5e-10 70.1 106 38.7
Sabra12G0030500 Salix brachista HOM05D000154 ORTHO05D009617 4.4e-10 68.6 178 31.5
CAN.G65.98 Capsicum annuum HOM05D007672 ORTHO05D009617 5.8e-10 68.2 139 31.7
SGA_v2.0_scaffold53G19283 Striga asiatica HOM05D000779 ORTHO05D000246 1.3e-09 67.0 109 32.1
Aqoxy3G04074 Aquilegia oxysepala HOM05D007672 ORTHO05D009617 1.7e-09 66.6 137 32.8
SalBow7G4052 Salvia bowleyana HOM05D000779 ORTHO05D000246 2.9e-09 65.9 121 31.4
PSO170G4169 Papaver somniferum HOM05D000779 ORTHO05D000246 4.9e-09 65.1 118 32.2
Solyc06g072480.1 Solanum lycopersicum HOM05D007672 ORTHO05D009617 6.4e-09 64.7 150 31.3
unitig_8.g3938 Utricularia gibba HOM05D000779 ORTHO05D000246 6.4e-09 64.7 113 33.6
DCAR_023572 Daucus carota HOM05D007672 ORTHO05D009617 1.1e-08 63.9 115 35.7
Hma1.2p1_0052F.1_g030730 Hydrangea macrophylla HOM05D000779 ORTHO05D000246 2.4e-08 62.8 107 32.7
PSO357G0678 Papaver somniferum HOM05D000779 ORTHO05D000246 4.1e-08 62.0 115 31.3
CSS0036489 Camellia sinensis var. sinensis HOM05D000779 ORTHO05D000246 5.4e-08 61.6 113 29.2
Psat6g051280 Pisum sativum HOM05D007672 ORTHO05D009617 7.1e-08 61.2 91 40.7
Os07g0129700 Oryza sativa ssp. japonica HOM05D000779 ORTHO05D000246 9.2e-08 60.8 104 35.6
CiPaw.07G029800 Carya illinoinensis HOM05D000779 ORTHO05D000246 6.0e-07 58.2 106 32.1
ECA246G2427 Erigeron canadensis HOM05D000779 ORTHO05D000246 7.8e-07 57.8 117 35.9
CANSAT80G2355 Cannabis sativa HOM05D000779 ORTHO05D000246 1.0e-06 57.4 114 30.7
Eucgr.H03292 Eucalyptus grandis HOM05D000779 ORTHO05D000246 1.0e-06 57.4 110 29.1
Lj2g0015752 Lotus japonicus HOM05D007672 ORTHO05D009617 1.0e-06 57.4 89 37.1
Zm00001eb299420 Zea mays HOM05D000779 ORTHO05D000246 1.0e-06 57.4 104 34.6
Zm00001eb354880 Zea mays HOM05D000779 ORTHO05D000246 1.0e-06 57.4 102 30.4
Hma1.2p1_0046F.1_g026670 Hydrangea macrophylla HOM05D000779 ORTHO05D000246 1.3e-06 57.0 132 31.1
Manes.06G106700 Manihot esculenta HOM05D000779 ORTHO05D000246 1.3e-06 57.0 120 31.7
SEGI_36691 Sequoiadendron giganteum HOM05D000779 ORTHO05D000246 1.3e-06 57.0 112 32.1
Zm00001eb058930 Zea mays HOM05D000779 ORTHO05D000246 1.3e-06 57.0 115 30.4
Zm00001eb217470 Zea mays HOM05D000779 ORTHO05D000246 2.3e-06 56.2 98 36.7
COL.COLO4_30088 Corchorus olitorius HOM05D000779 ORTHO05D000246 3.0e-06 55.8 112 31.2
CsaV3_5G031380 Cucumis sativus L. HOM05D000779 ORTHO05D000246 3.0e-06 55.8 110 30.0
Eucgr.K02285 Eucalyptus grandis HOM05D007672 ORTHO05D009617 3.0e-06 55.8 48 47.9
Sed0023815 Sechium edule HOM05D000779 ORTHO05D000246 3.0e-06 55.8 110 30.0
Actinidia04735 Actinidia chinensis HOM05D000779 ORTHO05D000246 3.9e-06 55.5 111 31.5
Actinidia19332 Actinidia chinensis HOM05D000779 ORTHO05D000246 3.9e-06 55.5 111 31.5
MSTRG.7913 Avicennia marina HOM05D000779 ORTHO05D000246 3.9e-06 55.5 117 33.3
CDE05G2442 Ceratophyllum demersum HOM05D000779 ORTHO05D000246 3.9e-06 55.5 118 28.8
CDE11G0101 Ceratophyllum demersum HOM05D000779 ORTHO05D000246 3.9e-06 55.5 118 28.8
SEGI_39888 Sequoiadendron giganteum HOM05D000779 ORTHO05D000246 3.9e-06 55.5 108 32.4
Atru.chr9.2512 Acer truncatum HOM05D000779 ORTHO05D000246 5.1e-06 55.1 130 30.0
BcaC01g04781 Brassica carinata HOM05D000779 ORTHO05D000246 5.1e-06 55.1 125 27.2
CANSAT01G0279 Cannabis sativa HOM05D000779 ORTHO05D000246 5.1e-06 55.1 115 29.6
Ca_06106_v3 Cicer arietinum L. HOM05D000779 ORTHO05D000246 5.1e-06 55.1 111 29.7
Cc04_g12230 Coffea canephora HOM05D000779 ORTHO05D000246 5.1e-06 55.1 131 32.8
Glyma.04G185100 Glycine max HOM05D000779 ORTHO05D000246 5.1e-06 55.1 115 29.6
Oeu049696.2 Olea europaea HOM05D000779 ORTHO05D000246 5.1e-06 55.1 113 28.3
ClCG05G025510 Citrullus lanatus HOM05D000779 ORTHO05D000246 6.6e-06 54.7 110 30.0
Gohir.A12G275600 Gossypium hirsutum HOM05D000779 ORTHO05D000246 6.6e-06 54.7 113 31.9
Oeu001722.1 Olea europaea HOM05D000779 ORTHO05D000246 6.6e-06 54.7 110 30.9
Os03g0727000 Oryza sativa ssp. japonica HOM05D000779 ORTHO05D000246 6.6e-06 54.7 109 36.7
Sp6g10130 Schrenkiella parvula HOM05D000779 ORTHO05D000246 6.6e-06 54.7 124 28.2
Zm00001eb130180 Zea mays HOM05D000779 ORTHO05D000246 6.6e-06 54.7 109 28.4
BcaB01g02876 Brassica carinata HOM05D000779 ORTHO05D000246 8.6e-06 54.3 125 26.4
C03p33750 Brassica napus HOM05D000779 ORTHO05D000246 8.6e-06 54.3 107 29.0
HanXRQChr05g0163601 Helianthus annuus HOM05D000779 ORTHO05D000246 8.6e-06 54.3 114 33.3
Potri.005G014200 Populus trichocarpa HOM05D000779 ORTHO05D000246 8.6e-06 54.3 129 28.7
QL10p009568 Quercus lobata HOM05D000779 ORTHO05D000246 8.6e-06 54.3 109 33.0
Zm00001eb055920 Zea mays HOM05D000779 ORTHO05D000246 8.6e-06 54.3 108 38.0
Zm00001eb117820 Zea mays HOM05D000779 ORTHO05D000246 8.6e-06 54.3 104 32.7


User provided reference genes

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