Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p03380 Brassica napus HOM05D005300 ORTHO05D006622 5.1e-202 707.6 372 100.0
BolC5t29115H Brassica oleracea HOM05D005300 ORTHO05D006622 5.8e-190 667.5 363 97.2
BraA10t42640Z Brassica rapa HOM05D005300 ORTHO05D006622 7.1e-188 660.6 363 96.4
A10p03670 Brassica napus HOM05D005300 ORTHO05D006622 7.8e-187 657.1 363 95.9
AL1G14900 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 3.2e-172 608.6 363 87.9
AT1G05140 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 3.5e-171 605.1 365 87.1
Carub.0001s0441 Capsella rubella HOM05D005300 ORTHO05D006622 1.8e-170 602.8 363 87.1
CARHR004610 Cardamine hirsuta HOM05D005300 ORTHO05D006622 1.1e-167 593.6 364 86.3
Sp1g03990 Schrenkiella parvula HOM05D005300 ORTHO05D006622 2.9e-165 585.5 363 85.4
SpUn0024_0150 Schrenkiella parvula HOM05D005300 ORTHO05D006622 2.9e-165 585.5 363 85.4
THA.LOC104826148 Tarenaya hassleriana HOM05D005300 ORTHO05D006622 1.2e-158 563.5 363 79.9
Carub.0004s1382 Capsella rubella HOM05D005300 ORTHO05D006622 7.6e-158 560.8 359 80.5
AL4G27860 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 1.7e-157 559.7 359 80.2
CARHR126300 Cardamine hirsuta HOM05D005300 ORTHO05D006622 6.5e-157 557.8 363 80.2
Thhalv10017977m.g Eutrema salsugineum HOM05D005300 ORTHO05D006622 1.4e-156 556.6 363 79.3
Sp4g14840 Schrenkiella parvula HOM05D005300 ORTHO05D006622 1.4e-156 556.6 362 79.3
Aa31LG1G19610 Aethionema arabicum HOM05D005300 ORTHO05D006622 5.5e-156 554.7 363 78.8
MD09G1110000 Malus domestica HOM05D005300 ORTHO05D006622 1.3e-154 550.1 362 77.3
FvH4_6g43160 Fragaria vesca HOM05D005300 ORTHO05D006622 3.0e-154 548.9 365 75.9
CSS0027646 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 6.7e-154 547.7 365 76.2
FAN05G3018 Fragaria x ananassa HOM05D005300 ORTHO05D006622 8.7e-154 547.4 365 75.9
RcHm_v2.0_Chr2g0159081 Rosa chinensis HOM05D005300 ORTHO05D006622 1.9e-153 546.2 365 76.2
FAN02G3120 Fragaria x ananassa HOM05D005300 ORTHO05D006622 2.5e-153 545.8 365 75.6
Prupe.3G216500 Prunus persica HOM05D005300 ORTHO05D006622 4.3e-153 545.0 365 75.9
Cpa.g.sc87.86 Carica papaya HOM05D005300 ORTHO05D006622 1.6e-152 543.1 365 75.6
Atru.chr6.3194 Acer truncatum HOM05D005300 ORTHO05D006622 2.2e-152 542.7 363 76.3
BraA05t20264Z Brassica rapa HOM05D005300 ORTHO05D006622 2.2e-152 542.7 363 77.7
CiPaw.04G115200 Carya illinoinensis HOM05D005300 ORTHO05D006622 2.8e-152 542.3 362 74.9
Manes.12G074100 Manihot esculenta HOM05D005300 ORTHO05D006622 6.3e-152 541.2 365 75.3
PGSC0003DMG400028948 Solanum tuberosum HOM05D005300 ORTHO05D006622 6.3e-152 541.2 365 75.1
A05p13230 Brassica napus HOM05D005300 ORTHO05D006622 1.1e-151 540.4 363 77.4
CAN.G1296.1 Capsicum annuum HOM05D005300 ORTHO05D006622 1.1e-151 540.4 365 74.2
Sopen07g025910 Solanum pennellii HOM05D005300 ORTHO05D006622 1.1e-151 540.4 365 74.8
BcaC02g11315 Brassica carinata HOM05D005300 ORTHO05D006622 5.3e-151 538.1 363 76.9
C04p17170 Brassica napus HOM05D005300 ORTHO05D006622 5.3e-151 538.1 363 76.9
BolC4t23267H Brassica oleracea HOM05D005300 ORTHO05D006622 5.3e-151 538.1 363 76.9
Lj1P766T34 Lonicera japonica HOM05D005300 ORTHO05D006622 5.3e-151 538.1 359 73.8
Solyc07g052290.1 Solanum lycopersicum HOM05D005300 ORTHO05D006622 5.3e-151 538.1 365 74.5
CANSAT64G1405 Cannabis sativa HOM05D005300 ORTHO05D006622 9.0e-151 537.3 364 74.5
Glyma.12G098200 Glycine max HOM05D005300 ORTHO05D006622 9.0e-151 537.3 364 74.5
Lalb_Chr03g0028691 Lupinus albus HOM05D005300 ORTHO05D006622 9.0e-151 537.3 364 74.7
TWI18G0506 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 9.0e-151 537.3 369 72.9
Nn1g03500 Nelumbo nucifera HOM05D005300 ORTHO05D006622 1.2e-150 537.0 364 73.4
BcaB02g10466 Brassica carinata HOM05D005300 ORTHO05D006622 2.6e-150 535.8 363 76.6
Glyma.06G306700 Glycine max HOM05D005300 ORTHO05D006622 7.7e-150 534.3 364 73.6
BcaC05g24426 Brassica carinata HOM05D005300 ORTHO05D006622 1.7e-149 533.1 278 99.6
Peaxi162Scf00007g00072 Petunia axillaris HOM05D005300 ORTHO05D006622 1.7e-149 533.1 365 74.0
Potri.014G154000 Populus trichocarpa HOM05D005300 ORTHO05D006622 1.7e-149 533.1 363 74.1
arahy.Tifrunner.gnm1.ann1.B9TUKK Arachis hypogaea HOM05D005300 ORTHO05D006622 2.2e-149 532.7 364 74.5
arahy.Tifrunner.gnm1.ann1.SJMT99 Arachis hypogaea HOM05D005300 ORTHO05D006622 2.2e-149 532.7 364 74.5
TAR624G0116 Trochodendron aralioides HOM05D005300 ORTHO05D006622 2.2e-149 532.7 365 74.2
PGR042G1729 Punica granatum HOM05D005300 ORTHO05D006622 3.8e-149 531.9 354 74.9
Oeu007114.1 Olea europaea HOM05D005300 ORTHO05D006622 5.0e-149 531.6 365 74.0
EL10Ac4g10369 Beta vulgaris HOM05D005300 ORTHO05D006622 6.5e-149 531.2 364 73.1
TAR626G0150 Trochodendron aralioides HOM05D005300 ORTHO05D006622 6.5e-149 531.2 365 73.4
ClCG02G008830 Citrullus lanatus HOM05D005300 ORTHO05D006622 1.4e-148 530.0 365 73.7
TWI36G1224 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 1.4e-148 530.0 369 72.9
COL.COLO4_11250 Corchorus olitorius HOM05D005300 ORTHO05D006622 1.9e-148 529.6 365 73.4
Thecc.02G365500 Theobroma cacao HOM05D005300 ORTHO05D006622 1.9e-148 529.6 365 73.2
Eucgr.A01121 Eucalyptus grandis HOM05D005300 ORTHO05D006622 2.5e-148 529.3 363 74.4
ECA240G1660 Erigeron canadensis HOM05D005300 ORTHO05D006622 4.2e-148 528.5 359 74.4
MELO3C019273.2 Cucumis melo HOM05D005300 ORTHO05D006622 5.5e-148 528.1 365 74.0
QL08p032961 Quercus lobata HOM05D005300 ORTHO05D006622 5.5e-148 528.1 364 72.0
Aqoxy1G02098 Aquilegia oxysepala HOM05D005300 ORTHO05D006622 7.2e-148 527.7 365 72.9
CSS0024072 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 7.2e-148 527.7 354 74.6
Lj3g0003317 Lotus japonicus HOM05D005300 ORTHO05D006622 9.4e-148 527.3 364 73.4
Sabra02G0174700 Salix brachista HOM05D005300 ORTHO05D006622 9.4e-148 527.3 365 72.9
Sc21g0001390 Simmondsia chinensis HOM05D005300 ORTHO05D006622 9.4e-148 527.3 363 70.8
Duzib251G0812 Durio zibethinus HOM05D005300 ORTHO05D006622 1.2e-147 526.9 365 73.4
Potri.002G228600 Populus trichocarpa HOM05D005300 ORTHO05D006622 1.6e-147 526.6 365 72.9
Gohir.D12G176700 Gossypium hirsutum HOM05D005300 ORTHO05D006622 2.1e-147 526.2 365 72.6
Gorai.008G189100 Gossypium raimondii HOM05D005300 ORTHO05D006622 2.1e-147 526.2 365 72.6
AUR62000009 Chenopodium quinoa HOM05D005300 ORTHO05D006622 3.6e-147 525.4 369 72.1
Ciclev10015229m.g Citrus clementina HOM05D005300 ORTHO05D006622 3.6e-147 525.4 363 72.5
Gohir.A12G174000 Gossypium hirsutum HOM05D005300 ORTHO05D006622 4.6e-147 525.0 365 72.3
Lsat_1_v5_gn_9_107520 Lactuca sativa HOM05D005300 ORTHO05D006622 7.9e-147 524.2 359 74.7
Phvul.011G103000 Phaseolus vulgaris HOM05D005300 ORTHO05D006622 7.9e-147 524.2 362 73.2
AUR62019178 Chenopodium quinoa HOM05D005300 ORTHO05D006622 1.0e-146 523.9 368 72.0
AUR62019179 Chenopodium quinoa HOM05D005300 ORTHO05D006622 1.0e-146 523.9 368 72.0
Sabra14G0116500 Salix brachista HOM05D005300 ORTHO05D006622 1.8e-146 523.1 363 73.0
Medtr4g048590 Medicago truncatula HOM05D005300 ORTHO05D006622 2.3e-146 522.7 364 72.5
Cc05_g04360 Coffea canephora HOM05D005300 ORTHO05D006622 3.0e-146 522.3 354 75.7
PSO675G7879 Papaver somniferum HOM05D005300 ORTHO05D006622 3.0e-146 522.3 363 72.5
Psat0s4267g0040 Pisum sativum HOM05D005300 ORTHO05D006622 3.0e-146 522.3 364 72.3
TPR.G4668 Trifolium pratense HOM05D005300 ORTHO05D006622 3.9e-146 521.9 362 72.9
Sed0016669 Sechium edule HOM05D005300 ORTHO05D006622 8.8e-146 520.8 365 73.7
PSO541G4463 Papaver somniferum HOM05D005300 ORTHO05D006622 2.0e-145 519.6 363 72.2
MSTRG.14149 Avicennia marina HOM05D005300 ORTHO05D006622 2.6e-145 519.2 365 71.0
Migut.H01227 Erythranthe guttata HOM05D005300 ORTHO05D006622 4.4e-145 518.5 359 70.5
SalBow1G7639 Salvia bowleyana HOM05D005300 ORTHO05D006622 5.7e-145 518.1 365 72.3
Ca_03278_v3 Cicer arietinum L. HOM05D005300 ORTHO05D006622 1.3e-144 516.9 364 71.4
HanXRQChr10g0295521 Helianthus annuus HOM05D005300 ORTHO05D006622 4.8e-144 515.0 377 71.1
DCAR_012943 Daucus carota HOM05D005300 ORTHO05D006622 4.1e-143 511.9 352 73.0
SGA_v2.0_scaffold159G37576 Striga asiatica HOM05D005300 ORTHO05D006622 5.9e-142 508.1 365 69.6
FAN09G2150 Fragaria x ananassa HOM05D005300 ORTHO05D006622 1.3e-141 506.9 341 74.8
Dinv39717 Davidia involucrata HOM05D005300 ORTHO05D006622 2.9e-141 505.8 341 73.3
Lalb_Chr19g0135951 Lupinus albus HOM05D005300 ORTHO05D006622 1.4e-138 496.9 359 69.9
Rhsim04G0052800 Rhododendron simsii HOM05D005300 ORTHO05D006622 9.7e-137 490.7 354 69.2
AT2G32480 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 2.8e-136 489.2 359 73.0
CiPaw.03G159400 Carya illinoinensis HOM05D005300 ORTHO05D006622 3.3e-129 465.7 367 64.9
Actinidia08387 Actinidia chinensis HOM05D005300 ORTHO05D006622 7.5e-129 464.5 303 76.9
Nitab4.5_0009179g0010 Nicotiana tabacum HOM05D005300 ORTHO05D006622 3.1e-127 459.1 320 73.1
ATR0794G038 Amborella trichopoda HOM05D005300 ORTHO05D006622 5.0e-125 451.8 364 65.4
CsaV3_2G034890 Cucumis sativus L. HOM05D005300 ORTHO05D006622 2.7e-123 446.0 307 73.6
MBI02_g21883_MAGBIO Magnolia biondii HOM05D005300 ORTHO05D006622 6.3e-120 434.9 311 71.1
GSVIVG01030436001 Vitis vinifera HOM05D005300 ORTHO05D006622 3.5e-118 429.1 344 65.1
Zm00001eb219720 Zea mays HOM05D005300 ORTHO05D006622 1.2e-115 420.6 360 61.4
Dinv05423 Davidia involucrata HOM05D005300 ORTHO05D006622 6.1e-115 418.3 289 73.0
Zm00001eb049010 Zea mays HOM05D005300 ORTHO05D006622 6.8e-114 414.8 362 60.5
CDE12G0066 Ceratophyllum demersum HOM05D005300 ORTHO05D006622 1.5e-113 413.7 301 70.4
Os03g0579000 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D006622 7.5e-113 411.4 360 60.0
Nitab4.5_0002137g0020 Nicotiana tabacum HOM05D005300 ORTHO05D006622 8.3e-112 407.9 282 73.4
Mapoly0064s0026 Marchantia polymorpha HOM05D005300 ORTHO05D006622 1.7e-109 400.2 364 55.8
AagrBONN_evm.TU.Sc2ySwM_344.3933 Anthoceros agrestis HOM05D005300 ORTHO05D006622 2.1e-107 393.3 362 56.1
SMO351G0125 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 3.6e-107 392.5 360 56.7
Pp3c9_3170 Physcomitrium patens HOM05D005300 ORTHO05D006622 5.0e-101 372.1 361 56.2
CDE01G0785 Ceratophyllum demersum HOM05D001211 ORTHO05D001084 1.9e-100 370.2 320 61.6
Haze_12853 Corylus avellana HOM05D005300 ORTHO05D006622 3.6e-99 365.9 281 68.3
Pp3c19_19130 Physcomitrium patens HOM05D005300 ORTHO05D006622 8.3e-96 354.8 355 54.1
Pp3c18_14380 Physcomitrium patens HOM05D005300 ORTHO05D006622 2.1e-91 340.1 360 52.2
PRCOL_00005585 Prasinoderma coloniale HOM05D005300 ORTHO05D006622 1.1e-90 337.8 352 51.4
CBR_g50915 Chara braunii HOM05D005300 ORTHO05D006622 5.2e-90 335.5 371 50.7
SEGI_01159 Sequoiadendron giganteum HOM05D005300 ORTHO05D006622 7.5e-89 331.6 319 56.7
BcaB06g28596 Brassica carinata HOM05D005300 ORTHO05D006622 3.9e-85 319.3 243 70.4
MCO09G462 Micromonas commoda HOM05D005300 ORTHO05D006622 1.9e-84 317.0 357 51.8
Cre03.g144164 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D006622 1.4e-79 300.8 367 45.5
BcaC02g07921 Brassica carinata HOM05D005300 ORTHO05D006622 2.4e-74 283.5 332 53.6
C04p61940 Brassica napus HOM05D005300 ORTHO05D006622 3.4e-57 226.5 345 46.1
HPP92_012410 Vanilla planifolia HOM05D005300 ORTHO05D006622 1.0e-48 198.4 150 68.7
A04p24950 Brassica napus HOM05D005300 ORTHO05D006622 6.5e-48 195.7 222 54.1
ATR0069G018 Amborella trichopoda HOM05D005300 ORTHO05D006622 5.5e-39 166.0 164 53.7
ATR0681G167 Amborella trichopoda HOM05D005300 ORTHO05D006622 6.5e-32 142.5 102 63.7
Zm00001eb417680 Zea mays HOM05D005300 ORTHO05D006622 1.0e-29 135.2 105 61.0
ATR0069G030 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.5e-28 131.3 79 72.2
ATR0820G169 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.3e-27 128.3 171 43.3
ATR0753G011 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.9e-24 117.1 96 59.4
unitig_749.g13943 Utricularia gibba HOM05D005300 ORTHO05D006622 1.4e-23 114.8 73 79.5
ATR0775G001 Amborella trichopoda HOM05D005300 ORTHO05D006622 4.4e-20 103.2 87 67.8
SMO163G0076 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 1.4e-13 81.6 102 46.1
Os05g0388025 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D299932 2.3e-13 80.9 87 46.0
Cre17.g730100 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D146069 5.5e-07 59.7 83 44.6


User provided reference genes

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