Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p01350 Brassica napus HOM05D004786 ORTHO05D005582 1.3e-86 323.2 183 100.0
BolC5t28917H Brassica oleracea HOM05D004786 ORTHO05D005582 1.1e-72 276.9 162 97.5
A10p01370 Brassica napus HOM05D004786 ORTHO05D005582 1.2e-66 256.9 162 84.6
BraA10t42413Z Brassica rapa HOM05D004786 ORTHO05D005582 2.2e-65 252.7 162 83.3
BcaC07g36997 Brassica carinata HOM05D004786 ORTHO05D005582 6.4e-57 224.6 115 98.3
C08p00190 Brassica napus HOM05D004786 ORTHO05D005582 6.4e-57 224.6 115 98.3
BolC8t46821H Brassica oleracea HOM05D004786 ORTHO05D005582 6.4e-57 224.6 115 98.3
Sp1g01660 Schrenkiella parvula HOM05D004786 ORTHO05D005582 1.4e-56 223.4 115 97.4
A08p37600 Brassica napus HOM05D004786 ORTHO05D005582 2.7e-55 219.2 111 99.1
BraA08t35657Z Brassica rapa HOM05D004786 ORTHO05D005582 2.7e-55 219.2 111 99.1
Thhalv10009111m.g Eutrema salsugineum HOM05D004786 ORTHO05D005582 1.6e-52 209.9 115 91.3
CARHR001960 Cardamine hirsuta HOM05D004786 ORTHO05D005582 5.2e-51 204.9 108 94.4
AL1G12010 Arabidopsis lyrata HOM05D004786 ORTHO05D005582 3.4e-50 202.2 110 91.8
Carub.0001s0173 Capsella rubella HOM05D004786 ORTHO05D005582 3.4e-50 202.2 110 91.8
AT1G02680 Arabidopsis thaliana HOM05D004786 ORTHO05D005582 1.1e-48 197.2 108 90.7
THA.LOC104801297 Tarenaya hassleriana HOM05D004786 ORTHO05D005582 6.0e-47 191.4 114 83.3
COL.COLO4_29184 Corchorus olitorius HOM05D004786 ORTHO05D005582 9.0e-43 177.6 120 73.3
Gohir.D10G086000 Gossypium hirsutum HOM05D004786 ORTHO05D005582 9.0e-43 177.6 120 73.3
Atru.chr5.1041 Acer truncatum HOM05D004786 ORTHO05D005582 1.5e-42 176.8 121 71.9
Duzib147G1635 Durio zibethinus HOM05D004786 ORTHO05D005582 1.5e-42 176.8 120 73.3
PGR142G0252 Punica granatum HOM05D004786 ORTHO05D005582 2.0e-42 176.4 121 73.6
Gorai.011G094200 Gossypium raimondii HOM05D004786 ORTHO05D005582 2.6e-42 176.0 120 72.5
Ciclev10022845m.g Citrus clementina HOM05D004786 ORTHO05D005582 3.4e-42 175.6 121 71.9
Manes.02G090900 Manihot esculenta HOM05D004786 ORTHO05D005582 3.4e-42 175.6 119 72.3
Cpa.g.sc18.18 Carica papaya HOM05D004786 ORTHO05D005582 5.8e-42 174.9 116 75.0
Ciclev10002837m.g Citrus clementina HOM05D004786 ORTHO05D005582 7.6e-42 174.5 121 71.1
Potri.014G122500 Populus trichocarpa HOM05D004786 ORTHO05D005582 1.3e-41 173.7 119 73.1
Nitab4.5_0002158g0250 Nicotiana tabacum HOM05D004786 ORTHO05D005582 2.2e-41 172.9 120 70.0
Nitab4.5_0007940g0040 Nicotiana tabacum HOM05D004786 ORTHO05D005582 2.2e-41 172.9 120 70.0
Peaxi162Scf00736g00421 Petunia axillaris HOM05D004786 ORTHO05D005582 2.2e-41 172.9 120 70.0
Prupe.2G036200 Prunus persica HOM05D004786 ORTHO05D005582 2.2e-41 172.9 115 72.2
Sabra14G0090900 Salix brachista HOM05D004786 ORTHO05D005582 2.2e-41 172.9 119 73.1
Ah.11g049360 Amaranthus hybridus HOM05D004786 ORTHO05D005582 3.8e-41 172.2 105 76.2
MSTRG.21673 Avicennia marina HOM05D004786 ORTHO05D005582 3.8e-41 172.2 116 71.6
CSS0028094 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 3.8e-41 172.2 120 69.2
Eucgr.C00116 Eucalyptus grandis HOM05D004786 ORTHO05D005582 3.8e-41 172.2 116 71.6
Oeu047382.1 Olea europaea HOM05D004786 ORTHO05D005582 3.8e-41 172.2 120 69.2
Migut.D00095 Erythranthe guttata HOM05D004786 ORTHO05D005582 4.9e-41 171.8 116 70.7
HanXRQChr01g0000811 Helianthus annuus HOM05D004786 ORTHO05D005582 6.4e-41 171.4 117 71.8
TWI18G0747 Tripterygium wilfordii HOM05D004786 ORTHO05D005582 8.4e-41 171.0 119 73.9
TAR636G2395 Trochodendron aralioides HOM05D004786 ORTHO05D005582 1.1e-40 170.6 120 70.0
CAN.G1164.25 Capsicum annuum HOM05D004786 ORTHO05D005582 1.4e-40 170.2 115 70.4
Solyc02g078300.3 Solanum lycopersicum HOM05D004786 ORTHO05D005582 1.4e-40 170.2 117 70.1
Sopen02g023150 Solanum pennellii HOM05D004786 ORTHO05D005582 1.4e-40 170.2 117 70.1
PGSC0003DMG400029688 Solanum tuberosum HOM05D004786 ORTHO05D005582 1.4e-40 170.2 117 70.1
Thecc.04G020200 Theobroma cacao HOM05D004786 ORTHO05D005582 1.9e-40 169.9 120 70.8
Aa31LG1G9890 Aethionema arabicum HOM05D004786 ORTHO05D005582 2.4e-40 169.5 165 60.6
SHI21583 Sapria himalayana HOM05D004786 ORTHO05D005582 4.2e-40 168.7 120 71.7
vmacro02412 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 4.2e-40 168.7 120 69.2
Cc06_g14210 Coffea canephora HOM05D004786 ORTHO05D005582 5.4e-40 168.3 115 71.3
PSO478G0620 Papaver somniferum HOM05D004786 ORTHO05D005582 7.1e-40 167.9 113 69.9
ECA248G3582 Erigeron canadensis HOM05D004786 ORTHO05D005582 9.3e-40 167.5 105 74.3
Rhsim13G0006100 Rhododendron simsii HOM05D004786 ORTHO05D005582 9.3e-40 167.5 120 69.2
Atru.chr2.1244 Acer truncatum HOM05D004786 ORTHO05D005582 1.6e-39 166.8 105 71.4
Haze_05017 Corylus avellana HOM05D004786 ORTHO05D005582 1.6e-39 166.8 115 70.4
EL10As5g23505 Beta vulgaris HOM05D004786 ORTHO05D005582 2.1e-39 166.4 111 71.2
Rhsim01G0289800 Rhododendron simsii HOM05D004786 ORTHO05D005582 2.1e-39 166.4 120 65.8
Sc05g0000530 Simmondsia chinensis HOM05D004786 ORTHO05D005582 2.1e-39 166.4 110 71.8
SGA_v2.0_scaffold376G50268 Striga asiatica HOM05D004786 ORTHO05D005582 2.1e-39 166.4 127 66.9
vmacro15120 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 2.1e-39 166.4 115 68.7
Nn3g21644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 2.7e-39 166.0 105 75.2
QL12p029078 Quercus lobata HOM05D004786 ORTHO05D005582 2.7e-39 166.0 110 72.7
Dinv27220 Davidia involucrata HOM05D004786 ORTHO05D005582 3.5e-39 165.6 120 66.7
Gorai.001G266700 Gossypium raimondii HOM05D004786 ORTHO05D005582 3.5e-39 165.6 120 66.7
Hma1.2p1_0089F.1_g045460 Hydrangea macrophylla HOM05D004786 ORTHO05D005582 3.5e-39 165.6 120 67.5
Actinidia21008 Actinidia chinensis HOM05D004395 ORTHO05D005234 4.6e-39 165.2 120 66.7
PSO017G1185 Papaver somniferum HOM05D004786 ORTHO05D005582 4.6e-39 165.2 113 69.0
CSS0001467 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 6.0e-39 164.9 120 65.8
CSS0006628 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 6.0e-39 164.9 120 65.8
DCAR_002518 Daucus carota HOM05D004786 ORTHO05D005582 6.0e-39 164.9 105 71.4
QL02p082487 Quercus lobata HOM05D004786 ORTHO05D005582 6.0e-39 164.9 115 69.6
CiPaw.08G091100 Carya illinoinensis HOM05D004786 ORTHO05D005582 1.0e-38 164.1 115 69.6
AUR62024675 Chenopodium quinoa HOM05D004786 ORTHO05D005582 1.3e-38 163.7 105 73.3
PSO478G2484 Papaver somniferum HOM05D004786 ORTHO05D005582 1.3e-38 163.7 120 66.7
Atru.chr2.1242 Acer truncatum HOM05D004786 ORTHO05D005582 3.0e-38 162.5 105 70.5
Nn4g25644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 3.0e-38 162.5 105 71.4
Aqoxy5G00800 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 3.9e-38 162.2 119 69.7
FAN13G1587 Fragaria x ananassa HOM05D004786 ORTHO05D005582 3.9e-38 162.2 115 67.8
RcHm_v2.0_Chr4g0410491 Rosa chinensis HOM05D004786 ORTHO05D005582 3.9e-38 162.2 115 67.8
Solyc02g078285.1 Solanum lycopersicum HOM05D004786 ORTHO05D005582 5.1e-38 161.8 117 66.7
arahy.Tifrunner.gnm1.ann1.BSR60Q Arachis hypogaea HOM05D004786 ORTHO05D005582 6.6e-38 161.4 105 74.3
arahy.Tifrunner.gnm1.ann1.QQF2XI Arachis hypogaea HOM05D004786 ORTHO05D005582 6.6e-38 161.4 115 67.8
arahy.Tifrunner.gnm1.ann1.U8589F Arachis hypogaea HOM05D004786 ORTHO05D005582 6.6e-38 161.4 105 74.3
Gohir.A10G101800 Gossypium hirsutum HOM05D004786 ORTHO05D005582 6.6e-38 161.4 105 75.2
FAN14G2614 Fragaria x ananassa HOM05D004786 ORTHO05D005582 8.7e-38 161.0 107 69.2
unitig_736.g22945 Utricularia gibba HOM05D004786 ORTHO05D005582 8.7e-38 161.0 130 64.6
Atru.chr5.1040 Acer truncatum HOM05D004786 ORTHO05D005582 1.1e-37 160.6 105 71.4
arahy.Tifrunner.gnm1.ann1.7GX23T Arachis hypogaea HOM05D004786 ORTHO05D005582 1.1e-37 160.6 105 73.3
FvH4_5g39500 Fragaria vesca HOM05D004786 ORTHO05D005582 1.5e-37 160.2 110 70.0
FAN18G2645 Fragaria x ananassa HOM05D004786 ORTHO05D005582 1.5e-37 160.2 110 70.0
Phvul.007G215700 Phaseolus vulgaris HOM05D004786 ORTHO05D005582 1.5e-37 160.2 115 67.8
RcHm_v2.0_Chr7g0241821 Rosa chinensis HOM05D004786 ORTHO05D005582 1.5e-37 160.2 115 69.6
Lj5g0024614 Lotus japonicus HOM05D004786 ORTHO05D005582 1.9e-37 159.8 115 67.0
Hund02934 Selenicereus undatus HOM05D004786 ORTHO05D005582 1.9e-37 159.8 95 78.9
Glyma.10G001200 Glycine max HOM05D004786 ORTHO05D005582 2.5e-37 159.5 115 67.8
Glyma.10G014500 Glycine max HOM05D004786 ORTHO05D005582 2.5e-37 159.5 111 70.3
SalBow3G4092 Salvia bowleyana HOM05D004786 ORTHO05D005582 2.5e-37 159.5 119 67.2
GSVIVG01028095001 Vitis vinifera HOM05D004786 ORTHO05D005582 2.5e-37 159.5 138 60.1
CANSAT01G0603 Cannabis sativa HOM05D004786 ORTHO05D005582 4.3e-37 158.7 110 69.1
SEGI_16103 Sequoiadendron giganteum HOM05D004786 ORTHO05D005582 4.3e-37 158.7 116 62.9
PSO384G2419 Papaver somniferum HOM05D004786 ORTHO05D005582 5.6e-37 158.3 105 68.6
Ca_01909_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 7.3e-37 157.9 115 66.1
Zm00001eb131310 Zea mays HOM05D004786 ORTHO05D005582 7.3e-37 157.9 102 73.5
PSO339G0583 Papaver somniferum HOM05D004786 ORTHO05D005582 1.6e-36 156.8 105 66.7
BcaB03g15799 Brassica carinata HOM05D004786 ORTHO05D005582 2.1e-36 156.4 78 97.4
Aqoxy2G02794 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 2.8e-36 156.0 102 66.7
Os01g0338100 Oryza sativa ssp. japonica HOM05D004786 ORTHO05D005582 6.2e-36 154.8 102 71.6
Psat6g162520 Pisum sativum HOM05D004786 ORTHO05D005582 6.2e-36 154.8 99 70.7
MELO3C015937.2 Cucumis melo HOM05D004786 ORTHO05D005582 1.1e-35 154.1 111 67.6
CsaV3_7G029840 Cucumis sativus L. HOM05D004786 ORTHO05D005582 1.1e-35 154.1 111 67.6
Gohir.A07G224200 Gossypium hirsutum HOM05D004786 ORTHO05D005582 1.4e-35 153.7 92 79.3
Lalb_Chr11g0063261 Lupinus albus HOM05D004786 ORTHO05D005582 1.4e-35 153.7 115 66.1
Medtr1g087370 Medicago truncatula HOM05D004786 ORTHO05D005582 1.4e-35 153.7 95 73.7
TPR.G19757 Trifolium pratense HOM05D004786 ORTHO05D005582 2.4e-35 152.9 115 63.5
CANSAT01G2201 Cannabis sativa HOM05D004786 ORTHO05D005582 6.9e-35 151.4 110 67.3
TAR633G1250 Trochodendron aralioides HOM05D004786 ORTHO05D005582 6.9e-35 151.4 100 72.0
Sed0001914 Sechium edule HOM05D004786 ORTHO05D005582 1.2e-34 150.6 115 63.5
Actinidia21415 Actinidia chinensis HOM05D004786 ORTHO05D005582 1.5e-34 150.2 124 62.1
Ca_10295_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 1.5e-34 150.2 115 62.6
CDE02G4247 Ceratophyllum demersum HOM05D004786 ORTHO05D005582 2.0e-34 149.8 120 63.3
AUR62011833 Chenopodium quinoa HOM05D004786 ORTHO05D005582 1.3e-33 147.1 146 53.4
ClCG09G005230 Citrullus lanatus HOM05D004786 ORTHO05D005582 1.3e-33 147.1 118 63.6
Oeu005869.1 Olea europaea HOM05D004786 ORTHO05D005582 2.9e-33 146.0 110 61.8
FvH4_6g14960 Fragaria vesca HOM05D004786 ORTHO05D005582 8.4e-33 144.4 87 77.0
BcaB03g13505 Brassica carinata HOM05D004786 ORTHO05D005582 1.2e-31 140.6 76 93.4
Lsat_1_v5_gn_3_69620 Lactuca sativa HOM05D004786 ORTHO05D005582 3.0e-30 136.0 115 61.7
AagrBONN_evm.TU.Sc2ySwM_344.2318 Anthoceros agrestis HOM05D004786 ORTHO05D005582 3.9e-30 135.6 102 58.8
Mapoly0033s0143 Marchantia polymorpha HOM05D004786 ORTHO05D005582 1.1e-29 134.0 112 57.1
AagrBONN_evm.TU.Sc2ySwM_362.2238 Anthoceros agrestis HOM05D004786 ORTHO05D005582 1.9e-29 133.3 100 59.0
Aqoxy293s004 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 4.3e-29 132.1 149 53.0
Glyma.10G002500 Glycine max HOM05D004786 ORTHO05D005582 3.7e-28 129.0 91 69.2
Mapoly0066s0092 Marchantia polymorpha HOM05D004786 ORTHO05D005582 3.7e-28 129.0 102 55.9
Pp3c20_20300 Physcomitrium patens HOM05D004786 ORTHO05D005582 4.8e-28 128.6 111 53.2
AagrBONN_evm.TU.Sc2ySwM_228.4423 Anthoceros agrestis HOM05D004786 ORTHO05D005582 6.2e-28 128.3 105 55.2
Actinidia12745 Actinidia chinensis HOM05D004786 ORTHO05D005582 1.1e-27 127.5 82 75.6
Pp3c10_23650 Physcomitrium patens HOM05D004786 ORTHO05D005582 1.8e-27 126.7 102 52.9
VMungo0720G3029 Vigna mungo HOM05D003159 ORTHO05D005582 1.8e-27 126.7 81 75.3
CBR_g31434 Chara braunii HOM05D004977 ORTHO05D006454 3.1e-27 125.9 105 56.2
HanXRQChr04g0094601 Helianthus annuus HOM05D004786 ORTHO05D005582 1.2e-26 124.0 83 74.7
SMO172G0161 Selaginella moellendorffii HOM05D004786 ORTHO05D005582 5.8e-26 121.7 113 53.1
MD02G1287100 Malus domestica HOM05D004786 ORTHO05D005582 1.3e-25 120.6 69 84.1
PGSC0003DMG400028899 Solanum tuberosum HOM05D000457 ORTHO05D000560 4.9e-25 118.6 80 68.8
DCAR_030468 Daucus carota HOM05D004786 ORTHO05D005582 6.4e-25 118.2 72 73.6
ATR0068G032 Amborella trichopoda HOM05D004786 ORTHO05D005582 1.3e-22 110.5 81 63.0
HPP92_025439 Vanilla planifolia HOM05D004786 ORTHO05D005582 2.3e-22 109.8 63 77.8
MCO05G258 Micromonas commoda HOM05D004786 ORTHO05D005582 5.1e-22 108.6 104 51.9
HPP92_025545 Vanilla planifolia HOM05D004786 ORTHO05D005582 5.1e-22 108.6 68 70.6
arahy.Tifrunner.gnm1.ann1.8ER521 Arachis hypogaea HOM05D004786 ORTHO05D005582 8.7e-22 107.8 105 57.1
arahy.Tifrunner.gnm1.ann1.NH5DW8 Arachis hypogaea HOM05D004786 ORTHO05D005582 2.5e-21 106.3 108 55.6
Solyc06g036200.2 Solanum lycopersicum HOM05D004786 ORTHO05D005582 4.3e-21 105.5 97 53.6
SGA_v2.0_scaffold334G49058 Striga asiatica HOM05D004395 ORTHO05D005234 2.6e-18 96.3 61 72.1
Haze_27741 Corylus avellana HOM05D004786 ORTHO05D005582 3.4e-18 95.9 89 51.7
Dinv10078 Davidia involucrata HOM05D004786 ORTHO05D005582 3.2e-16 89.4 70 61.4
PRCOL_00006976 Prasinoderma coloniale HOM05D004786 ORTHO05D005582 9.3e-16 87.8 101 40.6
Cre04.g222100 Chlamydomonas reinhardtii HOM05D004786 ORTHO05D005582 3.9e-14 82.4 102 44.1
Cfa022415 Carpinus fangiana HOM05D004786 ORTHO05D005582 1.0e-09 67.8 105 31.4
arahy.Tifrunner.gnm1.ann1.17AZVE Arachis hypogaea HOM05D004786 ORTHO05D005582 1.7e-09 67.0 105 41.0
SEGI_38506 Sequoiadendron giganteum HOM05D000004 ORTHO05D000002 7.9e-07 58.2 38 73.7


User provided reference genes

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