Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p00290 Brassica napus HOM05D005745 ORTHO05D006857 7.2e-256 886.7 442 100.0
BolC5t28819H Brassica oleracea HOM05D005745 ORTHO05D006857 8.0e-231 803.5 451 91.8
A10p00280 Brassica napus HOM05D005745 ORTHO05D006857 1.2e-221 773.1 443 89.6
BraA10t42305Z Brassica rapa HOM05D005745 ORTHO05D006857 1.5e-213 746.1 464 84.5
BcaB03g13612 Brassica carinata HOM05D005745 ORTHO05D006857 2.1e-202 709.1 443 84.2
Thhalv10007725m.g Eutrema salsugineum HOM05D005745 ORTHO05D006857 2.5e-192 675.6 448 80.1
Sp1g00540 Schrenkiella parvula HOM05D005745 ORTHO05D006857 1.8e-185 652.9 445 78.7
CARHR000560 Cardamine hirsuta HOM05D005745 ORTHO05D006857 1.3e-183 646.7 450 77.6
Carub.0001s0045 Capsella rubella HOM05D005745 ORTHO05D006857 3.0e-177 625.5 453 75.3
AL1G10580 Arabidopsis lyrata HOM05D005745 ORTHO05D006857 6.5e-172 607.8 453 73.7
Aa31LG1G11130 Aethionema arabicum HOM05D005745 ORTHO05D006857 6.3e-167 591.3 473 68.7
AT1G01760 Arabidopsis thaliana HOM05D005745 ORTHO05D006857 7.7e-157 557.8 416 75.0
THA.LOC104817020 Tarenaya hassleriana HOM05D005745 ORTHO05D006857 1.0e-140 504.2 415 67.0
Cpa.g.sc18.234 Carica papaya HOM05D005745 ORTHO05D006857 2.2e-135 486.5 434 60.4
Dinv43791 Davidia involucrata HOM05D005745 ORTHO05D006857 3.3e-123 446.0 440 55.5
GSVIVG01026870001 Vitis vinifera HOM05D005745 ORTHO05D006857 1.0e-121 441.0 444 56.3
Actinidia20926 Actinidia chinensis HOM05D005745 ORTHO05D006857 8.9e-121 438.0 445 55.3
Sabra14G0059300 Salix brachista HOM05D005745 ORTHO05D006857 1.3e-119 434.1 444 54.7
QL08p049437 Quercus lobata HOM05D005745 ORTHO05D006857 2.9e-119 433.0 450 55.3
Gohir.A12G105400 Gossypium hirsutum HOM05D005745 ORTHO05D006857 3.7e-119 432.6 443 54.2
Gohir.D12G109300 Gossypium hirsutum HOM05D005745 ORTHO05D006857 4.9e-119 432.2 443 55.1
CSS0024424 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 6.4e-119 431.8 435 54.5
Hma1.2p1_0001F.1_g001520 Hydrangea macrophylla HOM05D005745 ORTHO05D006857 6.4e-119 431.8 436 54.8
Gorai.008G118400 Gossypium raimondii HOM05D005745 ORTHO05D006857 2.4e-118 429.9 443 54.9
Actinidia10034 Actinidia chinensis HOM05D005745 ORTHO05D006857 5.4e-118 428.7 438 55.3
CSS0038489 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 9.2e-118 427.9 435 54.0
Ciclev10020429m.g Citrus clementina HOM05D005745 ORTHO05D006857 2.0e-117 426.8 428 55.4
VMungo0331G1900 Vigna mungo HOM05D005745 ORTHO05D006857 2.3e-116 423.3 438 54.3
TWI23G0914 Tripterygium wilfordii HOM05D005745 ORTHO05D006857 3.9e-116 422.5 475 50.3
CiPaw.02G029400 Carya illinoinensis HOM05D005745 ORTHO05D006857 6.6e-116 421.8 441 54.0
Manes.01G259400 Manihot esculenta HOM05D005745 ORTHO05D006857 1.5e-115 420.6 452 54.2
Sc26g0000960 Simmondsia chinensis HOM05D005745 ORTHO05D006857 1.5e-115 420.6 437 54.0
Medtr8g031440 Medicago truncatula HOM05D005745 ORTHO05D006857 1.9e-115 420.2 432 54.9
CANSAT56G0536 Cannabis sativa HOM05D005745 ORTHO05D006857 2.8e-114 416.4 447 52.8
Lj3g0021692 Lotus japonicus HOM05D005745 ORTHO05D006857 2.8e-114 416.4 440 53.9
TAR367G0002 Trochodendron aralioides HOM05D005745 ORTHO05D006857 4.7e-114 415.6 444 52.3
Sopen05g028140 Solanum pennellii HOM05D005745 ORTHO05D006857 1.8e-113 413.7 433 52.4
Lalb_Chr04g0256771 Lupinus albus HOM05D005745 ORTHO05D006857 2.3e-113 413.3 443 53.7
arahy.Tifrunner.gnm1.ann1.5YG8M2 Arachis hypogaea HOM05D005745 ORTHO05D006857 6.8e-113 411.8 436 53.0
arahy.Tifrunner.gnm1.ann1.JLYP5G Arachis hypogaea HOM05D005745 ORTHO05D006857 2.6e-112 409.8 436 52.8
PGSC0003DMG400021653 Solanum tuberosum HOM05D005745 ORTHO05D006857 2.6e-112 409.8 433 51.7
vmacro13297 Vaccinium macrocarpon HOM05D005745 ORTHO05D006857 2.6e-112 409.8 438 53.2
MD01G1055100 Malus domestica HOM05D005745 ORTHO05D006857 3.4e-112 409.5 441 53.3
Cc02_g37770 Coffea canephora HOM05D005745 ORTHO05D006857 1.3e-111 407.5 436 50.7
Solyc05g048810.4 Solanum lycopersicum HOM05D005745 ORTHO05D006857 1.7e-111 407.1 433 52.0
PSO782G5186 Papaver somniferum HOM05D005745 ORTHO05D006857 2.2e-111 406.8 437 52.4
FAN06G1549 Fragaria x ananassa HOM05D005745 ORTHO05D006857 6.4e-111 405.2 437 52.9
Cfa003949 Carpinus fangiana HOM05D000683 ORTHO05D000507 2.4e-110 403.3 422 55.0
AUR62033312 Chenopodium quinoa HOM05D005745 ORTHO05D006857 4.1e-110 402.5 444 51.1
AUR62033347 Chenopodium quinoa HOM05D005745 ORTHO05D006857 5.4e-110 402.1 443 50.8
PSO478G4474 Papaver somniferum HOM05D005745 ORTHO05D006857 5.4e-110 402.1 439 51.3
DCAR_015932 Daucus carota HOM05D005745 ORTHO05D006857 9.2e-110 401.4 429 53.1
EL10Ac1g00543 Beta vulgaris HOM05D005745 ORTHO05D006857 1.6e-109 400.6 447 49.9
FAN10G4182 Fragaria x ananassa HOM05D005745 ORTHO05D006857 3.5e-109 399.4 431 52.2
SGA_v2.0_scaffold277G46666 Striga asiatica HOM05D005745 ORTHO05D006857 3.5e-109 399.4 439 52.6
Peaxi162Scf00191g01322 Petunia axillaris HOM05D005745 ORTHO05D006857 6.0e-109 398.7 450 50.2
Nn6g33496 Nelumbo nucifera HOM05D005745 ORTHO05D006857 7.8e-109 398.3 436 51.1
Lsat_1_v5_gn_7_5060 Lactuca sativa HOM05D005745 ORTHO05D006857 3.9e-108 396.0 429 53.1
Nitab4.5_0007346g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 5.1e-108 395.6 456 51.5
CAN.G1535.1 Capsicum annuum HOM05D005745 ORTHO05D006857 8.6e-108 394.8 446 50.2
Hund27291 Selenicereus undatus HOM05D005745 ORTHO05D006857 2.5e-107 393.3 437 51.5
MSTRG.17255 Avicennia marina HOM05D005745 ORTHO05D006857 1.2e-106 391.0 441 50.1
Duzib138G1514 Durio zibethinus HOM05D005745 ORTHO05D006857 1.2e-106 391.0 379 55.7
PGR042G0923 Punica granatum HOM05D005745 ORTHO05D006857 1.2e-106 391.0 451 52.1
Lalb_Chr10g0097191 Lupinus albus HOM05D005745 ORTHO05D006857 1.6e-106 390.6 436 52.1
Rhsim07G0017300 Rhododendron simsii HOM05D000683 ORTHO05D000507 2.1e-106 390.2 406 54.9
Haze_15472 Corylus avellana HOM05D005745 ORTHO05D006857 2.8e-106 389.8 424 53.8
Eucgr.E00173 Eucalyptus grandis HOM05D005745 ORTHO05D006857 1.5e-104 384.0 446 48.7
Eucgr.E00169 Eucalyptus grandis HOM05D005745 ORTHO05D006857 3.4e-104 382.9 446 48.7
Potri.014G081400 Populus trichocarpa HOM05D005745 ORTHO05D006857 1.3e-103 380.9 385 55.1
CsaV3_6G000430 Cucumis sativus L. HOM05D005745 ORTHO05D006857 1.7e-103 380.6 442 49.3
ECA236G3051 Erigeron canadensis HOM05D005745 ORTHO05D006857 3.7e-103 379.4 439 50.6
Oeu056358.1 Olea europaea HOM05D005745 ORTHO05D006857 1.4e-102 377.5 401 52.9
Lj7C516G5 Lonicera japonica HOM05D005745 ORTHO05D006857 2.4e-102 376.7 376 55.6
CiPaw.02G029100 Carya illinoinensis HOM05D005745 ORTHO05D006857 9.2e-102 374.8 441 50.3
Aqoxy7G00357 Aquilegia oxysepala HOM05D005745 ORTHO05D006857 2.1e-101 373.6 443 48.1
AUR62004330 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.6e-98 364.0 448 49.3
ClCG06G003860 Citrullus lanatus HOM05D005745 ORTHO05D006857 3.8e-95 352.8 514 43.8
Ah.05g176680 Amaranthus hybridus HOM05D005745 ORTHO05D006857 9.3e-94 348.2 426 48.6
Ca_23656_v3 Cicer arietinum L. HOM05D005745 ORTHO05D006857 3.9e-92 342.8 398 50.0
HanXRQChr04g0121611 Helianthus annuus HOM05D005745 ORTHO05D006857 3.9e-92 342.8 372 51.6
Gohir.A12G105450 Gossypium hirsutum HOM05D005745 ORTHO05D006857 1.5e-91 340.9 373 50.9
Sed0009525 Sechium edule HOM05D005745 ORTHO05D006857 9.6e-91 338.2 376 50.8
Nitab4.5_0002262g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 4.8e-90 335.9 430 46.7
CiPaw.02G029200 Carya illinoinensis HOM05D005745 ORTHO05D006857 2.6e-88 330.1 379 51.5
FAN03G1898 Fragaria x ananassa HOM05D005745 ORTHO05D006857 6.6e-84 315.5 431 44.8
Prupe.2G164800 Prunus persica HOM05D005745 ORTHO05D006857 1.1e-83 314.7 337 53.4
RcHm_v2.0_Chr1g0354081 Rosa chinensis HOM05D005745 ORTHO05D006857 1.5e-83 314.3 457 44.9
MBI17_g21972_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 1.9e-83 313.9 425 44.7
HPP92_001499 Vanilla planifolia HOM05D005745 ORTHO05D006857 1.5e-80 304.3 399 44.1
Glyma.07G073300 Glycine max HOM05D005745 ORTHO05D006857 7.1e-78 295.4 334 51.5
Phvul.010G096200 Phaseolus vulgaris HOM05D005745 ORTHO05D006857 1.0e-76 291.6 300 55.3
Zm00001eb067600 Zea mays HOM05D005745 ORTHO05D006857 4.3e-75 286.2 443 40.4
MELO3C021221.2 Cucumis melo HOM05D005745 ORTHO05D006857 1.3e-74 284.6 407 44.0
Mapoly0023s0060 Marchantia polymorpha HOM05D005745 ORTHO05D006857 2.8e-74 283.5 520 36.7
FvH4_7g13861 Fragaria vesca HOM05D005745 ORTHO05D006857 6.9e-73 278.9 353 46.7
MBI18_g01486_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 6.9e-73 278.9 426 42.0
TPR.G39633 Trifolium pratense HOM05D005745 ORTHO05D006857 2.6e-72 276.9 216 63.9
Psat4g154320 Pisum sativum HOM05D005745 ORTHO05D006857 2.9e-71 273.5 299 52.8
Atru.BG.56.p Acer truncatum HOM05D005745 ORTHO05D006857 3.0e-68 263.5 368 44.0
CDE06G1611 Ceratophyllum demersum HOM05D005745 ORTHO05D006857 3.0e-68 263.5 438 38.6
Pp3c4_14060 Physcomitrium patens HOM05D005745 ORTHO05D006857 7.9e-61 238.8 514 34.0
FAN06G0933 Fragaria x ananassa HOM05D005745 ORTHO05D006857 1.3e-60 238.0 310 47.4
AagrBONN_evm.TU.Sc2ySwM_362.160 Anthoceros agrestis HOM05D005745 ORTHO05D006857 6.7e-60 235.7 475 34.7
AUR62003100 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.6e-58 231.1 180 61.1
AUR62034353 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.5e-56 224.6 189 58.7
Os04g0683500 Oryza sativa ssp. japonica HOM05D005745 ORTHO05D006857 1.3e-55 221.5 332 41.3
Glyma.03G013600 Glycine max HOM05D005745 ORTHO05D006857 2.9e-55 220.3 188 60.1
ATR0594G105 Amborella trichopoda HOM05D005745 ORTHO05D006857 5.0e-55 219.5 268 47.0
SHI13462 Sapria himalayana HOM05D005745 ORTHO05D006857 1.4e-52 211.5 441 37.0
Zm00001eb420790 Zea mays HOM05D005745 ORTHO05D006857 3.3e-51 206.8 217 48.8
unitig_26.g9734 Utricularia gibba HOM05D005745 ORTHO05D006857 2.8e-50 203.8 375 38.1
Thecc.01G362500 Theobroma cacao HOM05D005745 ORTHO05D006857 4.8e-50 203.0 253 48.2
Prupe.2G165000 Prunus persica HOM05D005745 ORTHO05D006857 2.0e-43 181.0 429 33.1
Zm00001eb191880 Zea mays HOM05D009386 ORTHO05D006857 1.3e-42 178.3 179 50.8
MD07G1140200 Malus domestica HOM05D005745 ORTHO05D006857 1.5e-40 171.4 310 38.1
TPR.G4413 Trifolium pratense HOM05D005745 ORTHO05D006857 3.0e-36 157.1 145 60.0
SEGI_32011 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 2.6e-35 154.1 193 45.1
SMO266G0032 Selaginella moellendorffii HOM05D005745 ORTHO05D006857 8.2e-34 149.1 306 36.9
Oeu056357.1 Olea europaea HOM05D005745 ORTHO05D006857 3.8e-31 140.2 145 53.8
AUR62034238 Chenopodium quinoa HOM05D002177 ORTHO05D002257 8.5e-31 139.0 127 53.5
AUR62019766 Chenopodium quinoa HOM05D005745 ORTHO05D006857 5.5e-30 136.3 108 57.4
MCO02G004 Micromonas commoda HOM05D005745 ORTHO05D006857 3.0e-28 130.6 427 28.1
Glyma.03G013550 Glycine max HOM05D005745 ORTHO05D006857 1.8e-25 121.3 83 69.9
Atru.chr5.475 Acer truncatum HOM05D005745 ORTHO05D006857 4.1e-25 120.2 86 67.4
Prupe.2G164500 Prunus persica HOM05D005745 ORTHO05D006857 5.4e-25 119.8 169 45.0
EL10Ac7g17708 Beta vulgaris HOM05D005745 ORTHO05D006857 2.7e-24 117.5 93 61.3
Zm00001eb442120 Zea mays HOM05D009386 ORTHO05D006857 4.5e-24 116.7 148 44.6
Oeu056356.1 Olea europaea HOM05D005745 ORTHO05D006857 1.0e-23 115.5 92 62.0
SEGI_32349 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 3.8e-23 113.6 88 61.4
COL.COLO4_12683 Corchorus olitorius HOM05D000683 ORTHO05D000507 1.5e-22 111.7 135 46.7
PRCOL_00000230 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 7.2e-22 109.4 433 28.2
FAN01G0854 Fragaria x ananassa HOM05D005745 ORTHO05D006857 8.8e-20 102.4 150 46.0
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 1.7e-18 98.2 382 25.4
Cre14.g629283 Chlamydomonas reinhardtii HOM05D005745 ORTHO05D006857 4.7e-13 80.1 102 46.1
PRCOL_00001873 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 6.1e-13 79.7 275 26.9
MCO14G396 Micromonas commoda HOM05D005745 ORTHO05D006857 1.7e-10 71.6 277 25.3
MCO15G493 Micromonas commoda HOM05D005745 ORTHO05D006857 1.1e-09 68.9 312 24.7


User provided reference genes

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