Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p66350 Brassica napus HOM05D004156 ORTHO05D005259 1.1e-176 623.2 319 100.0
BcaC02g12926 Brassica carinata HOM05D004156 ORTHO05D005259 3.5e-175 618.2 319 99.1
A04p29140 Brassica napus HOM05D004156 ORTHO05D005259 8.5e-174 613.6 319 98.4
BraA04t18383Z Brassica rapa HOM05D004156 ORTHO05D005259 7.2e-173 610.5 319 98.1
BolC4t28140H Brassica oleracea HOM05D004156 ORTHO05D005259 1.5e-170 602.8 322 97.2
A03p21000 Brassica napus HOM05D004156 ORTHO05D005259 2.5e-165 585.5 319 93.7
BraA03t11339Z Brassica rapa HOM05D004156 ORTHO05D005259 2.5e-165 585.5 319 93.7
BcaNung06518 Brassica carinata HOM05D004156 ORTHO05D005259 1.4e-163 579.7 319 93.7
BcaC01g05579 Brassica carinata HOM05D004156 ORTHO05D005259 1.8e-163 579.3 318 92.8
BolC3t14862H Brassica oleracea HOM05D004156 ORTHO05D005259 1.8e-163 579.3 318 92.8
BcaNung06338 Brassica carinata HOM05D004156 ORTHO05D005259 3.7e-161 571.6 319 92.5
Thhalv10016958m.g Eutrema salsugineum HOM05D004156 ORTHO05D005259 3.1e-160 568.5 317 91.8
BcaB01g03735 Brassica carinata HOM05D004156 ORTHO05D005259 9.1e-160 567.0 337 87.8
Sp4g20310 Schrenkiella parvula HOM05D004156 ORTHO05D005259 1.2e-159 566.6 319 91.5
AL4G34970 Arabidopsis lyrata HOM05D004156 ORTHO05D005259 5.2e-147 524.6 324 84.6
AT2G37990 Arabidopsis thaliana HOM05D004156 ORTHO05D005259 2.2e-145 519.2 318 84.9
Carub.0004s1996 Capsella rubella HOM05D004156 ORTHO05D005259 2.9e-145 518.8 315 84.8
Aa31LG5G23180 Aethionema arabicum HOM05D004156 ORTHO05D005259 3.7e-145 518.5 317 84.2
CARHR132550 Cardamine hirsuta HOM05D004156 ORTHO05D005259 1.1e-141 506.9 323 82.0
BraA05t19767Z Brassica rapa HOM05D004156 ORTHO05D005259 2.3e-134 482.6 320 81.6
THA.LOC104806527 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 1.8e-131 473.0 317 76.3
A05p08010 Brassica napus HOM05D004156 ORTHO05D005259 2.3e-131 472.6 320 80.6
C03p24730 Brassica napus HOM05D004156 ORTHO05D005259 4.4e-130 468.4 318 78.9
THA.LOC104805714 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 2.1e-124 449.5 317 74.8
Gohir.D07G039500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 1.9e-120 436.4 320 71.9
Gorai.001G041600 Gossypium raimondii HOM05D004156 ORTHO05D005259 9.3e-120 434.1 320 71.6
Gohir.A07G035500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 2.7e-119 432.6 320 71.2
Gorai.009G018400 Gossypium raimondii HOM05D004156 ORTHO05D005259 3.9e-118 428.7 319 70.5
COL.COLO4_05789 Corchorus olitorius HOM05D004156 ORTHO05D005259 1.1e-117 427.2 321 69.8
Gohir.A05G017100 Gossypium hirsutum HOM05D004156 ORTHO05D005259 1.9e-117 426.4 324 70.1
Thecc.09G124800 Theobroma cacao HOM05D004156 ORTHO05D005259 3.1e-115 419.1 317 69.4
Duzib150G1332 Durio zibethinus HOM05D004156 ORTHO05D005259 6.9e-115 417.9 320 69.7
Cpa.g.sc1199.3 Carica papaya HOM05D004156 ORTHO05D005259 1.2e-114 417.2 311 70.4
Atru.chr7.278 Acer truncatum HOM05D004156 ORTHO05D005259 3.4e-114 415.6 292 72.9
Ciclev10008881m.g Citrus clementina HOM05D004156 ORTHO05D005259 9.9e-114 414.1 308 70.5
Nn8g39422 Nelumbo nucifera HOM05D004156 ORTHO05D005259 6.4e-113 411.4 306 69.9
Manes.14G131500 Manihot esculenta HOM05D004156 ORTHO05D005259 4.2e-112 408.7 321 67.6
GSVIVG01027422001 Vitis vinifera HOM05D004156 ORTHO05D005259 7.1e-112 407.9 308 70.5
Prupe.7G241100 Prunus persica HOM05D004156 ORTHO05D005259 1.6e-111 406.8 315 68.3
CAN.G594.20 Capsicum annuum HOM05D004156 ORTHO05D005259 2.7e-111 406.0 304 70.7
Solyc12g006550.2 Solanum lycopersicum HOM05D004156 ORTHO05D005259 3.5e-111 405.6 317 67.5
Peaxi162Scf00274g00336 Petunia axillaris HOM05D004156 ORTHO05D005259 7.9e-111 404.4 314 68.5
Sopen12g002500 Solanum pennellii HOM05D004156 ORTHO05D005259 1.0e-110 404.1 317 67.2
MD15G1174800 Malus domestica HOM05D004156 ORTHO05D005259 1.7e-110 403.3 313 68.1
CsaV3_1G042300 Cucumis sativus L. HOM05D004156 ORTHO05D005259 2.3e-110 402.9 316 67.4
Lj7C630T1 Lonicera japonica HOM05D004156 ORTHO05D005259 3.0e-110 402.5 321 66.0
BolC4t22574H Brassica oleracea HOM05D004156 ORTHO05D005259 5.1e-110 401.7 267 80.5
PGSC0003DMG400018964 Solanum tuberosum HOM05D004156 ORTHO05D005259 5.1e-110 401.7 317 66.6
TWI32G0547 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 1.1e-109 400.6 294 70.4
Nitab4.5_0005139g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 1.5e-109 400.2 317 66.6
Nitab4.5_0010819g0030 Nicotiana tabacum HOM05D004156 ORTHO05D005259 3.3e-109 399.1 317 66.9
Dinv36535 Davidia involucrata HOM05D004156 ORTHO05D003047 4.3e-109 398.7 310 66.8
MELO3C015663.2 Cucumis melo HOM05D004156 ORTHO05D005259 9.6e-109 397.5 317 66.6
TAR625G0545 Trochodendron aralioides HOM05D004156 ORTHO05D005259 9.6e-109 397.5 317 67.2
Actinidia35394 Actinidia chinensis HOM05D004156 ORTHO05D005259 1.3e-108 397.1 297 68.0
MD02G1034000 Malus domestica HOM05D004156 ORTHO05D005259 1.6e-108 396.7 305 67.9
Eucgr.E02428 Eucalyptus grandis HOM05D004156 ORTHO05D005259 2.1e-108 396.4 315 65.4
HanXRQChr06g0181321 Helianthus annuus HOM05D004156 ORTHO05D005259 2.1e-108 396.4 310 65.8
PGR102G0554 Punica granatum HOM05D004156 ORTHO05D005259 2.1e-108 396.4 308 66.9
CANSAT11G1878 Cannabis sativa HOM05D004156 ORTHO05D005259 2.8e-108 396.0 323 65.0
GSVIVG01027072001 Vitis vinifera HOM05D004156 ORTHO05D005259 4.8e-108 395.2 311 67.8
CiPaw.07G232300 Carya illinoinensis HOM05D004156 ORTHO05D005259 6.2e-108 394.8 311 68.5
Haze_24995 Corylus avellana HOM05D004156 ORTHO05D005259 8.1e-108 394.4 313 66.8
Hma1.2p1_0018F.1_g012530 Hydrangea macrophylla HOM05D004156 ORTHO05D005259 8.1e-108 394.4 323 66.3
FAN23G0721 Fragaria x ananassa HOM05D004156 ORTHO05D005259 4.0e-107 392.1 316 64.2
ClCG03G013780 Citrullus lanatus HOM05D004156 ORTHO05D005259 5.3e-107 391.7 318 65.7
FvH4_1g03500 Fragaria vesca HOM05D004156 ORTHO05D005259 5.3e-107 391.7 319 63.9
FAN19G1880 Fragaria x ananassa HOM05D004156 ORTHO05D005259 6.9e-107 391.3 316 64.2
FAN28G2743 Fragaria x ananassa HOM05D004156 ORTHO05D005259 6.9e-107 391.3 316 64.2
Cfa002719 Carpinus fangiana HOM05D004156 ORTHO05D005259 9.0e-107 391.0 313 65.5
Sed0021765 Sechium edule HOM05D004156 ORTHO05D005259 2.6e-106 389.4 318 65.4
Cc06_g08630 Coffea canephora HOM05D004156 ORTHO05D005259 3.4e-106 389.0 317 64.7
FAN26G1774 Fragaria x ananassa HOM05D004156 ORTHO05D005259 3.4e-106 389.0 316 63.9
BcaB02g09228 Brassica carinata HOM05D004156 ORTHO05D005259 5.8e-106 388.3 223 92.8
Potri.005G231000 Populus trichocarpa HOM05D004156 ORTHO05D005259 1.3e-105 387.1 298 66.4
CSS0011304 Camellia sinensis var. sinensis HOM05D004156 ORTHO05D005259 1.7e-105 386.7 314 66.2
HanXRQChr07g0187411 Helianthus annuus HOM05D004156 ORTHO05D005259 2.9e-105 386.0 312 63.5
PSO210G0875 Papaver somniferum HOM05D004156 ORTHO05D005259 2.9e-105 386.0 308 65.6
Sc14g0000240 Simmondsia chinensis HOM05D004156 ORTHO05D005259 8.4e-105 384.4 291 66.0
MBI01_g37801_MAGBIO Magnolia biondii HOM05D004156 ORTHO05D005259 1.9e-104 383.3 286 68.9
Sabra05G0178400 Salix brachista HOM05D004156 ORTHO05D000382 1.9e-104 383.3 310 64.2
Lsat_1_v5_gn_9_120581 Lactuca sativa HOM05D004156 ORTHO05D005259 2.4e-104 382.9 309 63.4
Ah.14g087130 Amaranthus hybridus HOM05D004156 ORTHO05D005259 5.4e-104 381.7 292 65.8
BcaC02g11942 Brassica carinata HOM05D004156 ORTHO05D005259 7.1e-104 381.3 258 81.0
MSTRG.12622 Avicennia marina HOM05D004156 ORTHO05D005259 1.2e-103 380.6 304 64.5
Gohir.D05G018000 Gossypium hirsutum HOM05D004156 ORTHO05D005259 1.6e-103 380.2 259 74.1
EL10Ac8g18639 Beta vulgaris HOM05D004156 ORTHO05D005259 2.1e-103 379.8 326 61.0
VMungo1309G1108 Vigna mungo HOM05D004156 ORTHO05D005259 2.1e-103 379.8 310 65.2
PSO832G0272 Papaver somniferum HOM05D004156 ORTHO05D005259 2.7e-103 379.4 308 64.9
Glyma.13G167900 Glycine max HOM05D004156 ORTHO05D005259 4.6e-103 378.6 311 65.3
DCAR_014878 Daucus carota HOM05D004156 ORTHO05D005259 6.0e-103 378.3 291 67.0
Aqoxy2G02204 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 1.3e-102 377.1 291 65.3
Glyma.17G115500 Glycine max HOM05D004156 ORTHO05D005259 1.3e-102 377.1 312 64.4
Phvul.009G258100 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 3.0e-102 375.9 313 63.6
AUR62013371 Chenopodium quinoa HOM05D004156 ORTHO05D005259 5.1e-102 375.2 293 64.8
ECA247G0053 Erigeron canadensis HOM05D004156 ORTHO05D005259 5.1e-102 375.2 307 63.2
Aqoxy6G01405 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 6.7e-102 374.8 289 65.4
RcHm_v2.0_Chr2g0088711 Rosa chinensis HOM05D004156 ORTHO05D005259 1.5e-101 373.6 316 62.3
SGA_v2.0_scaffold35G14133 Striga asiatica HOM05D004156 ORTHO05D005259 1.9e-101 373.2 310 64.5
Phvul.003G163900 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 3.3e-101 372.5 318 61.9
VMungo1215G1862 Vigna mungo HOM05D004156 ORTHO05D005259 3.3e-101 372.5 315 63.2
Psat2g006920 Pisum sativum HOM05D004156 ORTHO05D005259 4.3e-101 372.1 318 60.4
QL02p088083 Quercus lobata HOM05D004156 ORTHO05D005259 3.7e-100 369.0 293 64.2
DCAR_017823 Daucus carota HOM05D004156 ORTHO05D005259 4.8e-100 368.6 348 58.0
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 4.8e-100 368.6 306 64.7
TWI34G0257 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 6.2e-100 368.2 352 59.1
ClCG06G011000 Citrullus lanatus HOM05D004156 ORTHO05D005259 1.1e-99 367.5 325 60.9
AUR62011120 Chenopodium quinoa HOM05D004156 ORTHO05D005259 1.4e-99 367.1 303 62.7
TPR.G25243 Trifolium pratense HOM05D004156 ORTHO05D005259 4.0e-99 365.5 315 61.6
HPP92_015694 Vanilla planifolia HOM05D004156 ORTHO05D005259 5.3e-99 365.2 292 65.4
Lj4g0019515 Lotus japonicus HOM05D004156 ORTHO05D005259 1.5e-98 363.6 311 60.1
Lalb_Chr12g0197861 Lupinus albus HOM05D004156 ORTHO05D005259 2.0e-98 363.2 315 61.6
arahy.Tifrunner.gnm1.ann1.KP5LKI Arachis hypogaea HOM05D004156 ORTHO05D005259 4.5e-98 362.1 309 62.1
unitig_21.g20656 Utricularia gibba HOM05D004156 ORTHO05D005259 5.8e-98 361.7 317 61.2
arahy.Tifrunner.gnm1.ann1.FDU8BE Arachis hypogaea HOM05D004156 ORTHO05D005259 1.0e-97 360.9 303 63.0
Migut.L01695 Erythranthe guttata HOM05D004156 ORTHO05D005259 1.3e-97 360.5 285 64.6
Os04g0685100 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 1.3e-97 360.5 309 61.8
ATR0730G095 Amborella trichopoda HOM05D004156 ORTHO05D005259 4.9e-97 358.6 305 61.6
Rhsim03G0247600 Rhododendron simsii HOM05D004156 ORTHO05D005259 4.9e-97 358.6 375 54.9
Sed0019954 Sechium edule HOM05D004156 ORTHO05D005259 5.5e-96 355.1 318 61.0
SalBow5G0058 Salvia bowleyana HOM05D004156 ORTHO05D005259 2.1e-95 353.2 390 52.1
Medtr2g008870 Medicago truncatula HOM05D004156 ORTHO05D005259 4.6e-95 352.1 309 60.2
Oeu055874.1 Olea europaea HOM05D004156 ORTHO05D005259 1.1e-93 347.4 302 61.6
SGA_v2.0_scaffold224G42948 Striga asiatica HOM05D004156 ORTHO05D005259 9.6e-93 344.4 330 59.7
C04p09670 Brassica napus HOM05D004156 ORTHO05D005259 1.3e-92 344.0 238 79.0
Zm00001eb122260 Zea mays HOM05D004156 ORTHO05D005259 6.2e-92 341.7 309 60.2
Lalb_Chr07g0178901 Lupinus albus HOM05D004156 ORTHO05D005259 6.9e-91 338.2 292 63.7
CDE04G1546 Ceratophyllum demersum HOM05D004156 ORTHO05D005259 5.8e-90 335.1 294 59.9
Gohir.D08G025232 Gossypium hirsutum HOM05D004156 ORTHO05D005259 2.5e-88 329.7 376 53.7
CiPaw.15G031800 Carya illinoinensis HOM05D004156 ORTHO05D005259 1.6e-87 327.0 304 59.5
SEGI_31652 Sequoiadendron giganteum HOM05D004156 ORTHO05D005259 7.9e-87 324.7 315 55.6
Hund09135 Selenicereus undatus HOM05D004156 ORTHO05D005259 3.9e-86 322.4 342 53.5
Atru.chr7.1220 Acer truncatum HOM05D004156 ORTHO05D005259 6.7e-86 321.6 320 56.6
BcaC02g11940 Brassica carinata HOM05D004156 ORTHO05D005259 5.7e-85 318.5 177 93.8
Mapoly0036s0028 Marchantia polymorpha HOM05D004156 ORTHO05D005259 4.8e-84 315.5 305 54.8
C03p24670 Brassica napus HOM05D004156 ORTHO05D005259 5.5e-80 302.0 158 95.6
Actinidia26780 Actinidia chinensis HOM05D004156 ORTHO05D005259 2.7e-79 299.7 327 54.4
Ca_00137_v3 Cicer arietinum L. HOM05D004156 ORTHO05D000741 1.0e-78 297.7 333 52.6
Zm00001eb337040 Zea mays HOM05D004156 ORTHO05D005259 1.4e-78 297.4 308 54.5
AagrBONN_evm.TU.Sc2ySwM_368.2845 Anthoceros agrestis HOM05D004156 ORTHO05D005259 6.3e-76 288.5 300 52.7
Sc18g0000640 Simmondsia chinensis HOM05D004156 ORTHO05D005259 1.4e-75 287.3 298 52.3
CBR_g18768 Chara braunii HOM05D004156 ORTHO05D005259 7.4e-69 265.0 288 50.0
SMO351G0347 Selaginella moellendorffii HOM05D004156 ORTHO05D005259 7.4e-69 265.0 252 54.8
Pp3c3_32550 Physcomitrium patens HOM05D004156 ORTHO05D005259 1.3e-68 264.2 308 51.0
TAR626G0974 Trochodendron aralioides HOM05D004156 ORTHO05D005259 1.1e-64 251.1 181 72.4
BcaC09g49789 Brassica carinata HOM05D004156 ORTHO05D005259 2.2e-57 226.9 139 87.1
HanXRQChr06g0181331 Helianthus annuus HOM05D004156 ORTHO05D005259 2.7e-55 219.9 166 67.5
Oeu045226.1 Olea europaea HOM05D004156 ORTHO05D005259 8.3e-52 208.4 322 43.2
Cre01.g020950 Chlamydomonas reinhardtii HOM05D004156 ORTHO05D005259 1.6e-47 194.1 303 41.9
Gohir.A08G014600 Gossypium hirsutum HOM05D004156 ORTHO05D005259 4.7e-47 192.6 143 72.7
BcaNung06017 Brassica carinata HOM05D004156 ORTHO05D005259 5.6e-40 169.1 83 98.8
TAR383G1033 Trochodendron aralioides HOM05D004156 ORTHO05D005259 2.8e-39 166.8 172 59.9
Nitab4.5_0002556g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 4.4e-37 159.5 175 54.3
Os06g0142050 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 9.5e-32 141.7 163 55.8
PRCOL_00002162 Prasinoderma coloniale HOM05D004156 ORTHO05D005259 2.1e-31 140.6 332 34.9
C01p32910 Brassica napus HOM05D004156 ORTHO05D005259 1.4e-30 137.9 99 74.7
MCO03G226 Micromonas commoda HOM05D004156 ORTHO05D005259 1.6e-26 124.4 309 33.3
Actinidia37158 Actinidia chinensis HOM05D004156 ORTHO05D005259 1.1e-22 111.7 112 59.8
Nn8g39426 Nelumbo nucifera HOM05D004156 ORTHO05D005259 2.2e-20 104.0 70 68.6
AagrBONN_evm.TU.Sc2ySwM_228.5043 Anthoceros agrestis HOM05D004156 ORTHO05D005259 4.1e-19 99.8 90 55.6
AagrBONN_evm.TU.Sc2ySwM_228.5042 Anthoceros agrestis HOM05D004156 ORTHO05D005259 1.6e-15 87.8 89 52.8
Rhsim11G0147700 Rhododendron simsii HOM05D004156 ORTHO05D338749 1.3e-09 68.2 61 57.4
Zm00001eb060690 Zea mays HOM05D004156 ORTHO05D005259 1.9e-08 64.3 56 53.6
Zm00001eb433790 Zea mays HOM05D003078 ORTHO05D446193 5.6e-08 62.8 56 51.8
Psat0s2088g0120 Pisum sativum HOM05D001944 ORTHO05D002405 1.6e-07 61.2 38 81.6
TAR636G0452 Trochodendron aralioides HOM05D000809 ORTHO05D007735 2.8e-07 60.5 43 67.4


User provided reference genes

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