Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p61940 Brassica napus HOM05D005300 ORTHO05D006622 3.7e-143 511.5 260 100.0
BcaC02g07921 Brassica carinata HOM05D005300 ORTHO05D006622 3.4e-80 302.4 316 61.4
Sp4g14840 Schrenkiella parvula HOM05D005300 ORTHO05D006622 8.4e-79 297.7 448 46.7
CARHR126300 Cardamine hirsuta HOM05D005300 ORTHO05D006622 3.0e-76 289.3 448 45.8
Carub.0004s1382 Capsella rubella HOM05D005300 ORTHO05D006622 1.5e-75 287.0 448 46.0
Thhalv10017977m.g Eutrema salsugineum HOM05D005300 ORTHO05D006622 1.9e-75 286.6 448 45.5
AL4G27860 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 4.8e-74 282.0 448 46.4
A05p13230 Brassica napus HOM05D005300 ORTHO05D006622 2.0e-72 276.6 441 45.1
BraA05t20264Z Brassica rapa HOM05D005300 ORTHO05D006622 2.2e-71 273.1 441 44.9
BcaC02g11315 Brassica carinata HOM05D005300 ORTHO05D006622 6.5e-71 271.6 444 44.8
C04p17170 Brassica napus HOM05D005300 ORTHO05D006622 6.5e-71 271.6 444 44.8
BolC4t23267H Brassica oleracea HOM05D005300 ORTHO05D006622 6.5e-71 271.6 444 44.8
BcaB02g10466 Brassica carinata HOM05D005300 ORTHO05D006622 2.1e-69 266.5 441 44.9
BcaB06g28596 Brassica carinata HOM05D005300 ORTHO05D006622 3.9e-68 262.3 296 57.1
AT1G05140 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 4.3e-67 258.8 442 43.2
AL1G14900 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 8.2e-66 254.6 439 42.6
AT2G32480 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 8.2e-66 254.6 421 44.4
Sp1g03990 Schrenkiella parvula HOM05D005300 ORTHO05D006622 4.5e-64 248.8 452 42.0
SpUn0024_0150 Schrenkiella parvula HOM05D005300 ORTHO05D006622 4.5e-64 248.8 452 42.0
CARHR004610 Cardamine hirsuta HOM05D005300 ORTHO05D006622 7.7e-64 248.1 436 41.7
A04p24950 Brassica napus HOM05D005300 ORTHO05D006622 1.3e-63 247.3 174 78.7
A10p03670 Brassica napus HOM05D005300 ORTHO05D006622 2.9e-63 246.1 429 43.1
BraA10t42640Z Brassica rapa HOM05D005300 ORTHO05D006622 2.9e-63 246.1 429 43.1
BolC5t29115H Brassica oleracea HOM05D005300 ORTHO05D006622 1.9e-62 243.4 429 42.9
Aa31LG1G19610 Aethionema arabicum HOM05D005300 ORTHO05D006622 4.6e-61 238.8 447 41.6
Carub.0001s0441 Capsella rubella HOM05D005300 ORTHO05D006622 8.8e-60 234.6 345 47.0
THA.LOC104826148 Tarenaya hassleriana HOM05D005300 ORTHO05D006622 1.5e-59 233.8 451 39.9
C05p03380 Brassica napus HOM05D005300 ORTHO05D006622 2.2e-58 229.9 345 46.1
Cpa.g.sc87.86 Carica papaya HOM05D005300 ORTHO05D006622 3.4e-56 222.6 345 42.6
Potri.014G154000 Populus trichocarpa HOM05D005300 ORTHO05D006622 7.7e-56 221.5 345 43.2
Manes.12G074100 Manihot esculenta HOM05D005300 ORTHO05D006622 1.3e-55 220.7 345 42.3
Eucgr.A01121 Eucalyptus grandis HOM05D005300 ORTHO05D006622 2.9e-55 219.5 338 45.0
Ca_03278_v3 Cicer arietinum L. HOM05D005300 ORTHO05D006622 2.5e-54 216.5 345 42.6
Prupe.3G216500 Prunus persica HOM05D005300 ORTHO05D006622 4.2e-54 215.7 345 41.4
Glyma.12G098200 Glycine max HOM05D005300 ORTHO05D006622 5.5e-54 215.3 345 42.6
MD09G1110000 Malus domestica HOM05D005300 ORTHO05D006622 7.2e-54 214.9 345 41.7
Lj3g0003317 Lotus japonicus HOM05D005300 ORTHO05D006622 1.2e-53 214.2 345 42.6
Lalb_Chr03g0028691 Lupinus albus HOM05D005300 ORTHO05D006622 1.2e-53 214.2 345 43.5
CiPaw.04G115200 Carya illinoinensis HOM05D005300 ORTHO05D006622 2.1e-53 213.4 345 41.7
FvH4_6g43160 Fragaria vesca HOM05D005300 ORTHO05D006622 2.1e-53 213.4 345 41.7
FAN05G3018 Fragaria x ananassa HOM05D005300 ORTHO05D006622 2.1e-53 213.4 345 41.7
Medtr4g048590 Medicago truncatula HOM05D005300 ORTHO05D006622 2.1e-53 213.4 345 41.7
Glyma.06G306700 Glycine max HOM05D005300 ORTHO05D006622 3.6e-53 212.6 345 41.2
PGR042G1729 Punica granatum HOM05D005300 ORTHO05D006622 3.6e-53 212.6 345 41.7
Sabra14G0116500 Salix brachista HOM05D005300 ORTHO05D006622 3.6e-53 212.6 345 42.0
FAN02G3120 Fragaria x ananassa HOM05D005300 ORTHO05D006622 4.7e-53 212.2 345 41.4
Sc21g0001390 Simmondsia chinensis HOM05D005300 ORTHO05D006622 7.9e-53 211.5 346 41.0
TPR.G4668 Trifolium pratense HOM05D005300 ORTHO05D006622 7.9e-53 211.5 342 41.5
arahy.Tifrunner.gnm1.ann1.B9TUKK Arachis hypogaea HOM05D005300 ORTHO05D006622 1.0e-52 211.1 345 42.3
arahy.Tifrunner.gnm1.ann1.SJMT99 Arachis hypogaea HOM05D005300 ORTHO05D006622 1.0e-52 211.1 345 42.3
Phvul.011G103000 Phaseolus vulgaris HOM05D005300 ORTHO05D006622 1.0e-52 211.1 342 41.2
Psat0s4267g0040 Pisum sativum HOM05D005300 ORTHO05D006622 1.4e-52 210.7 345 41.4
CSS0027646 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 1.8e-52 210.3 345 40.6
Potri.002G228600 Populus trichocarpa HOM05D005300 ORTHO05D006622 1.8e-52 210.3 344 41.9
AUR62000009 Chenopodium quinoa HOM05D005300 ORTHO05D006622 2.3e-52 209.9 350 41.1
PGSC0003DMG400028948 Solanum tuberosum HOM05D005300 ORTHO05D006622 2.3e-52 209.9 345 40.6
Atru.chr6.3194 Acer truncatum HOM05D005300 ORTHO05D006622 3.0e-52 209.5 345 41.7
RcHm_v2.0_Chr2g0159081 Rosa chinensis HOM05D005300 ORTHO05D006622 3.9e-52 209.1 345 41.7
Sopen07g025910 Solanum pennellii HOM05D005300 ORTHO05D006622 5.2e-52 208.8 345 40.6
CAN.G1296.1 Capsicum annuum HOM05D005300 ORTHO05D006622 6.7e-52 208.4 345 40.6
AUR62019178 Chenopodium quinoa HOM05D005300 ORTHO05D006622 6.7e-52 208.4 349 41.0
AUR62019179 Chenopodium quinoa HOM05D005300 ORTHO05D006622 6.7e-52 208.4 349 41.0
Ciclev10015229m.g Citrus clementina HOM05D005300 ORTHO05D006622 6.7e-52 208.4 345 41.2
Solyc07g052290.1 Solanum lycopersicum HOM05D005300 ORTHO05D006622 1.5e-51 207.2 345 40.3
Thecc.02G365500 Theobroma cacao HOM05D005300 ORTHO05D006622 1.5e-51 207.2 345 41.2
EL10Ac4g10369 Beta vulgaris HOM05D005300 ORTHO05D006622 2.6e-51 206.5 345 41.2
Nn1g03500 Nelumbo nucifera HOM05D005300 ORTHO05D006622 2.6e-51 206.5 345 40.3
Oeu007114.1 Olea europaea HOM05D005300 ORTHO05D006622 3.3e-51 206.1 346 40.2
Duzib251G0812 Durio zibethinus HOM05D005300 ORTHO05D006622 7.4e-51 204.9 345 40.6
CANSAT64G1405 Cannabis sativa HOM05D005300 ORTHO05D006622 9.7e-51 204.5 342 40.6
Sabra02G0174700 Salix brachista HOM05D005300 ORTHO05D006622 9.7e-51 204.5 344 41.9
TAR626G0150 Trochodendron aralioides HOM05D005300 ORTHO05D006622 1.3e-50 204.1 345 40.3
Gohir.D12G176700 Gossypium hirsutum HOM05D005300 ORTHO05D006622 1.7e-50 203.8 345 40.3
Gorai.008G189100 Gossypium raimondii HOM05D005300 ORTHO05D006622 1.7e-50 203.8 345 40.3
SalBow1G7639 Salvia bowleyana HOM05D005300 ORTHO05D006622 1.7e-50 203.8 346 39.9
Gohir.A12G174000 Gossypium hirsutum HOM05D005300 ORTHO05D006622 2.2e-50 203.4 345 40.0
Peaxi162Scf00007g00072 Petunia axillaris HOM05D005300 ORTHO05D006622 2.8e-50 203.0 345 40.3
ECA240G1660 Erigeron canadensis HOM05D005300 ORTHO05D006622 4.8e-50 202.2 345 40.6
MSTRG.14149 Avicennia marina HOM05D005300 ORTHO05D006622 1.8e-49 200.3 345 39.7
ClCG02G008830 Citrullus lanatus HOM05D005300 ORTHO05D006622 1.8e-49 200.3 345 40.3
TWI36G1224 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 3.1e-49 199.5 345 40.0
Dinv05423 Davidia involucrata HOM05D005300 ORTHO05D006622 4.1e-49 199.1 222 51.4
MELO3C019273.2 Cucumis melo HOM05D005300 ORTHO05D006622 5.3e-49 198.7 345 40.6
QL08p032961 Quercus lobata HOM05D005300 ORTHO05D006622 9.1e-49 198.0 344 39.8
Cc05_g04360 Coffea canephora HOM05D005300 ORTHO05D006622 1.2e-48 197.6 345 40.0
Lsat_1_v5_gn_9_107520 Lactuca sativa HOM05D005300 ORTHO05D006622 2.0e-48 196.8 345 39.7
PSO541G4463 Papaver somniferum HOM05D005300 ORTHO05D006622 2.0e-48 196.8 342 39.5
TWI18G0506 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 2.0e-48 196.8 345 40.6
Dinv39717 Davidia involucrata HOM05D005300 ORTHO05D006622 2.6e-48 196.4 333 39.3
Lj1P766T34 Lonicera japonica HOM05D005300 ORTHO05D006622 2.6e-48 196.4 345 38.8
Rhsim04G0052800 Rhododendron simsii HOM05D005300 ORTHO05D006622 2.6e-48 196.4 423 37.4
Aqoxy1G02098 Aquilegia oxysepala HOM05D005300 ORTHO05D006622 4.5e-48 195.7 345 39.7
CSS0024072 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 4.5e-48 195.7 345 38.3
PSO675G7879 Papaver somniferum HOM05D005300 ORTHO05D006622 4.5e-48 195.7 342 39.2
GSVIVG01030436001 Vitis vinifera HOM05D005300 ORTHO05D006622 4.5e-48 195.7 195 57.4
Lalb_Chr19g0135951 Lupinus albus HOM05D005300 ORTHO05D006622 5.9e-48 195.3 222 52.3
Sed0016669 Sechium edule HOM05D005300 ORTHO05D006622 2.9e-47 193.0 345 40.0
Nitab4.5_0009179g0010 Nicotiana tabacum HOM05D005300 ORTHO05D006622 3.8e-47 192.6 222 50.5
Nitab4.5_0002137g0020 Nicotiana tabacum HOM05D005300 ORTHO05D006622 5.0e-47 192.2 222 50.9
DCAR_012943 Daucus carota HOM05D005300 ORTHO05D006622 1.5e-46 190.7 342 39.5
Migut.H01227 Erythranthe guttata HOM05D005300 ORTHO05D006622 1.9e-46 190.3 345 38.3
TAR624G0116 Trochodendron aralioides HOM05D005300 ORTHO05D006622 2.5e-46 189.9 344 39.0
CsaV3_2G034890 Cucumis sativus L. HOM05D005300 ORTHO05D006622 3.2e-46 189.5 222 51.4
ATR0794G038 Amborella trichopoda HOM05D005300 ORTHO05D006622 9.4e-46 188.0 322 38.8
HanXRQChr10g0295521 Helianthus annuus HOM05D005300 ORTHO05D006622 6.1e-45 185.3 357 37.3
SGA_v2.0_scaffold159G37576 Striga asiatica HOM05D005300 ORTHO05D006622 6.1e-45 185.3 345 37.4
FAN09G2150 Fragaria x ananassa HOM05D005300 ORTHO05D006622 1.3e-42 177.6 321 38.6
CiPaw.03G159400 Carya illinoinensis HOM05D005300 ORTHO05D006622 2.2e-42 176.8 218 48.2
COL.COLO4_11250 Corchorus olitorius HOM05D005300 ORTHO05D006622 3.7e-42 176.0 167 58.1
MBI02_g21883_MAGBIO Magnolia biondii HOM05D005300 ORTHO05D006622 3.7e-42 176.0 221 47.5
Zm00001eb219720 Zea mays HOM05D005300 ORTHO05D006622 1.4e-41 174.1 347 36.9
BolC4t27673H Brassica oleracea HOM05D005300 ORTHO05D006622 5.3e-41 172.2 85 98.8
Zm00001eb049010 Zea mays HOM05D005300 ORTHO05D006622 2.5e-38 163.3 166 54.2
Mapoly0064s0026 Marchantia polymorpha HOM05D005300 ORTHO05D006622 6.1e-37 158.7 345 33.0
AagrBONN_evm.TU.Sc2ySwM_344.3933 Anthoceros agrestis HOM05D005300 ORTHO05D006622 1.4e-36 157.5 341 34.6
Os03g0579000 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D006622 5.2e-36 155.6 348 33.9
Haze_12853 Corylus avellana HOM05D005300 ORTHO05D006622 8.3e-34 148.3 171 52.6
Pp3c9_3170 Physcomitrium patens HOM05D005300 ORTHO05D006622 2.0e-32 143.7 345 34.2
BcaC05g24426 Brassica carinata HOM05D005300 ORTHO05D006622 1.0e-31 141.4 175 49.1
CDE12G0066 Ceratophyllum demersum HOM05D005300 ORTHO05D006622 3.3e-30 136.3 203 42.4
SMO351G0125 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 1.2e-29 134.4 162 46.3
HPP92_012410 Vanilla planifolia HOM05D005300 ORTHO05D006622 6.1e-29 132.1 150 50.0
Actinidia08387 Actinidia chinensis HOM05D005300 ORTHO05D006622 3.0e-28 129.8 289 33.9
CDE01G0785 Ceratophyllum demersum HOM05D001211 ORTHO05D001084 1.2e-27 127.9 145 49.0
PRCOL_00005585 Prasinoderma coloniale HOM05D005300 ORTHO05D006622 1.4e-25 120.9 210 40.5
Pp3c19_19130 Physcomitrium patens HOM05D005300 ORTHO05D006622 2.4e-25 120.2 167 45.5
CBR_g50915 Chara braunii HOM05D005300 ORTHO05D006622 6.6e-23 112.1 158 43.7
MCO09G462 Micromonas commoda HOM05D005300 ORTHO05D006622 3.3e-22 109.8 218 37.2
Cre03.g144164 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D006622 2.8e-21 106.7 159 41.5
Pp3c18_14380 Physcomitrium patens HOM05D005300 ORTHO05D006622 2.3e-20 103.6 162 43.2
SEGI_01159 Sequoiadendron giganteum HOM05D005300 ORTHO05D006622 2.6e-19 100.1 307 30.9
ATR0069G018 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.3e-15 87.0 135 40.0
unitig_749.g13943 Utricularia gibba HOM05D005300 ORTHO05D006622 1.3e-10 71.2 55 65.5
ATR0775G001 Amborella trichopoda HOM05D005300 ORTHO05D006622 6.6e-07 58.9 83 44.6


User provided reference genes

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