Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p58080 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 1099.3 553 100.0
BcaC02g08126 Brassica carinata HOM05D001082 ORTHO05D005120 2.2e-257 892.1 449 99.6
BolC4t27268H Brassica oleracea HOM05D001082 ORTHO05D005120 9.8e-210 733.8 451 83.1
BcaC02g08190 Brassica carinata HOM05D001082 ORTHO05D005120 2.8e-209 732.3 451 83.6
C04p57470 Brassica napus HOM05D001082 ORTHO05D005120 2.8e-209 732.3 451 83.6
Sp1g28860 Schrenkiella parvula HOM05D001082 ORTHO05D005120 2.6e-202 709.1 451 80.3
BolC4t27335H Brassica oleracea HOM05D001082 ORTHO05D005120 4.9e-201 704.9 389 93.1
BcaB03g13701 Brassica carinata HOM05D001082 ORTHO05D005120 3.5e-199 698.7 451 79.6
CARHR032850 Cardamine hirsuta HOM05D001082 ORTHO05D005120 2.3e-198 696.0 451 78.7
BraA05t21326Z Brassica rapa HOM05D001082 ORTHO05D005120 3.9e-198 695.3 451 79.8
AL1G47790 Arabidopsis lyrata HOM05D001082 ORTHO05D005120 3.3e-197 692.2 451 78.7
BcaC05g27806 Brassica carinata HOM05D001082 ORTHO05D005120 5.6e-197 691.4 451 79.2
BolC5t32536H Brassica oleracea HOM05D001082 ORTHO05D005120 1.6e-196 689.9 451 78.9
AT1G33410 Arabidopsis thaliana HOM05D001082 ORTHO05D005120 2.1e-196 689.5 451 78.5
Carub.0001s3160 Capsella rubella HOM05D001082 ORTHO05D005120 7.5e-194 681.0 451 77.4
A05p24320 Brassica napus HOM05D001082 ORTHO05D005120 1.7e-193 679.9 480 75.0
C05p38080 Brassica napus HOM05D001082 ORTHO05D005120 2.4e-192 676.0 480 74.4
Thhalv10006552m.g Eutrema salsugineum HOM05D001082 ORTHO05D005120 1.3e-190 670.2 451 77.4
THA.LOC104806485 Tarenaya hassleriana HOM05D001082 ORTHO05D005120 1.1e-160 570.9 451 67.6
Aa31LG6G7920 Aethionema arabicum HOM05D001082 ORTHO05D005120 2.4e-155 553.1 451 65.2
Thecc.06G064200 Theobroma cacao HOM05D001082 ORTHO05D005120 4.5e-114 416.0 455 50.3
Ciclev10000026m.g Citrus clementina HOM05D001082 ORTHO05D005120 2.7e-111 406.8 449 48.8
Gorai.007G307100 Gossypium raimondii HOM05D001082 ORTHO05D005120 1.1e-107 394.8 455 47.0
Duzib235G1067 Durio zibethinus HOM05D001082 ORTHO05D005120 5.4e-107 392.5 455 46.8
Gohir.D11G284200 Gossypium hirsutum HOM05D001082 ORTHO05D005120 3.5e-106 389.8 455 46.4
Gohir.A11G274000 Gossypium hirsutum HOM05D001082 ORTHO05D005120 7.7e-106 388.7 455 46.8
Potri.001G078600 Populus trichocarpa HOM05D001082 ORTHO05D005120 1.0e-105 388.3 455 47.5
Sabra01G0055900 Salix brachista HOM05D001082 ORTHO05D005120 1.5e-104 384.4 452 47.1
COL.COLO4_31206 Corchorus olitorius HOM05D001082 ORTHO05D005120 3.2e-104 383.3 456 46.9
Manes.15G096100 Manihot esculenta HOM05D001082 ORTHO05D005120 1.2e-101 374.8 454 45.6
GSVIVG01015912001 Vitis vinifera HOM05D001082 ORTHO05D005120 2.0e-101 374.0 455 47.0
TWI14G0841 Tripterygium wilfordii HOM05D001082 ORTHO05D005120 1.6e-98 364.4 446 46.4
Hma1.2p1_0052F.1_g030150 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 1.0e-97 361.7 451 45.0
CiPaw.02G126600 Carya illinoinensis HOM05D001082 ORTHO05D005120 8.6e-97 358.6 453 43.9
Hma1.2p1_0052F.1_g030160 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 8.6e-97 358.6 451 44.6
CANSAT78G0369 Cannabis sativa HOM05D001082 ORTHO05D005120 2.5e-96 357.1 456 44.5
QL10p065261 Quercus lobata HOM05D001082 ORTHO05D005120 1.2e-95 354.8 444 45.5
Dinv24538 Davidia involucrata HOM05D001082 ORTHO05D005120 2.1e-95 354.0 454 44.7
MD10G1009800 Malus domestica HOM05D001082 ORTHO05D005120 3.6e-95 353.2 456 43.6
vmacro01638 Vaccinium macrocarpon HOM05D001082 ORTHO05D005120 4.7e-95 352.8 456 43.0
FAN05G0906 Fragaria x ananassa HOM05D001082 ORTHO05D005120 4.0e-94 349.7 445 44.7
CSS0006928 Camellia sinensis var. sinensis HOM05D001082 ORTHO05D005120 5.2e-94 349.4 455 43.7
FvH4_6g26400 Fragaria vesca HOM05D001082 ORTHO05D005120 6.8e-94 349.0 445 44.7
TAR629G2955 Trochodendron aralioides HOM05D001082 ORTHO05D005120 1.2e-93 348.2 455 44.2
Haze_11087 Corylus avellana HOM05D001082 ORTHO05D005120 1.5e-93 347.8 444 44.4
DCAR_003267 Daucus carota HOM05D001082 ORTHO05D005120 4.4e-93 346.3 443 44.0
Nitab4.5_0000399g0040 Nicotiana tabacum HOM05D001082 ORTHO05D005120 7.5e-93 345.5 454 41.6
RcHm_v2.0_Chr2g0126921 Rosa chinensis HOM05D001082 ORTHO05D005120 9.8e-93 345.1 452 43.6
Cfa008545 Carpinus fangiana HOM05D001082 ORTHO05D005120 1.3e-92 344.7 444 43.7
Rhsim11G0112000 Rhododendron simsii HOM05D001082 ORTHO05D005120 1.3e-92 344.7 457 42.2
PSO782G2901 Papaver somniferum HOM05D001082 ORTHO05D005120 2.7e-90 337.0 458 42.4
Actinidia11712 Actinidia chinensis HOM05D001082 ORTHO05D005120 1.7e-89 334.3 455 42.0
PSO063G6006 Papaver somniferum HOM05D001082 ORTHO05D005120 2.3e-89 334.0 458 41.9
Eucgr.G00034 Eucalyptus grandis HOM05D001082 ORTHO05D005120 6.6e-89 332.4 449 43.0
Sopen01g044980 Solanum pennellii HOM05D001082 ORTHO05D005120 1.1e-88 331.6 457 41.1
Peaxi162Scf00194g00732 Petunia axillaris HOM05D001082 ORTHO05D005120 4.3e-88 329.7 481 39.3
Migut.N00999 Erythranthe guttata HOM05D001082 ORTHO05D005120 9.5e-88 328.6 446 41.3
Nitab4.5_0004090g0140 Nicotiana tabacum HOM05D001082 ORTHO05D005120 1.6e-87 327.8 452 40.3
Nn3g20376 Nelumbo nucifera HOM05D001082 ORTHO05D005120 6.2e-87 325.9 460 42.6
Solyc01g102540.3 Solanum lycopersicum HOM05D001082 ORTHO05D005120 1.8e-86 324.3 457 40.5
Phvul.007G218900 Phaseolus vulgaris HOM05D001082 ORTHO05D005120 5.2e-86 322.8 452 40.9
Prupe.5G022000 Prunus persica HOM05D001082 ORTHO05D005120 1.5e-85 321.2 456 40.1
Lj5C310G5 Lonicera japonica HOM05D001082 ORTHO05D005120 2.0e-85 320.9 406 44.8
PGR042G2652 Punica granatum HOM05D001082 ORTHO05D005120 2.0e-85 320.9 442 42.8
Sed0025950 Sechium edule HOM05D001082 ORTHO05D005120 2.6e-85 320.5 483 38.9
RcHm_v2.0_Chr4g0402211 Rosa chinensis HOM05D001082 ORTHO05D005120 7.5e-85 318.9 453 41.1
MSTRG.5181 Avicennia marina HOM05D001082 ORTHO05D005120 2.9e-84 317.0 452 41.8
Glyma.13G142200 Glycine max HOM05D001082 ORTHO05D005120 3.7e-84 316.6 446 41.9
Ah.03g136660 Amaranthus hybridus HOM05D001082 ORTHO05D005120 8.3e-84 315.5 454 40.3
Sc07g0003370 Simmondsia chinensis HOM05D001082 ORTHO05D005120 2.4e-83 313.9 450 41.3
Aqoxy5G03217 Aquilegia oxysepala HOM05D001082 ORTHO05D005120 9.2e-83 312.0 445 40.7
HanXRQChr14g0452101 Helianthus annuus HOM05D001082 ORTHO05D005120 1.2e-82 311.6 450 41.1
Oeu010602.3 Olea europaea HOM05D001082 ORTHO05D005120 1.2e-82 311.6 444 40.8
Lsat_1_v5_gn_7_54700 Lactuca sativa HOM05D001082 ORTHO05D005120 6.0e-82 309.3 452 40.0
ECA238G2349 Erigeron canadensis HOM05D001082 ORTHO05D005120 7.8e-82 308.9 449 39.4
Lalb_Chr21g0315021 Lupinus albus HOM05D001082 ORTHO05D005120 1.0e-81 308.5 445 39.8
MELO3C020407.2 Cucumis melo HOM05D001082 ORTHO05D005120 1.3e-81 308.1 437 39.8
arahy.Tifrunner.gnm1.ann1.922X53 Arachis hypogaea HOM05D001082 ORTHO05D005120 2.3e-81 307.4 481 39.5
arahy.Tifrunner.gnm1.ann1.Y1BA5Y Arachis hypogaea HOM05D001082 ORTHO05D005120 2.3e-81 307.4 481 39.5
MD05G1161100 Malus domestica HOM05D001082 ORTHO05D005120 3.0e-81 307.0 456 39.7
Glyma.10G055100 Glycine max HOM05D001082 ORTHO05D005120 6.6e-81 305.8 447 41.4
Lj5g0014962 Lotus japonicus HOM05D001082 ORTHO05D005120 1.1e-80 305.1 452 40.3
EL10Ac6g13928 Beta vulgaris HOM05D001082 ORTHO05D005120 4.3e-80 303.1 454 38.3
CsaV3_2G011850 Cucumis sativus L. HOM05D001082 ORTHO05D005120 4.3e-80 303.1 437 39.8
CAN.G1379.30 Capsicum annuum HOM05D001082 ORTHO05D005120 9.5e-80 302.0 396 42.7
Ca_11506_v3 Cicer arietinum L. HOM05D001082 ORTHO05D005120 9.5e-80 302.0 452 40.5
Psat6g073960 Pisum sativum HOM05D001082 ORTHO05D005120 9.5e-80 302.0 446 40.4
SGA_v2.0_scaffold8G04471 Striga asiatica HOM05D001082 ORTHO05D005120 9.5e-80 302.0 439 40.1
Medtr1g063180 Medicago truncatula HOM05D001082 ORTHO05D005120 2.8e-79 300.4 446 39.9
Lj3g0009617 Lotus japonicus HOM05D001082 ORTHO05D005120 3.6e-79 300.1 451 39.9
SHI21156 Sapria himalayana HOM05D001082 ORTHO05D005120 1.1e-78 298.5 455 38.7
TPR.G11274 Trifolium pratense HOM05D001082 ORTHO05D005120 2.3e-78 297.4 447 40.3
SalBow1G7939 Salvia bowleyana HOM05D001082 ORTHO05D005120 4.4e-77 293.1 450 39.1
ECA233G1393 Erigeron canadensis HOM05D001082 ORTHO05D005120 1.7e-76 291.2 451 37.5
AUR62042820 Chenopodium quinoa HOM05D001082 ORTHO05D005120 1.0e-73 282.0 482 36.3
ECA233G1970 Erigeron canadensis HOM05D001082 ORTHO05D005120 1.6e-71 274.6 491 36.9
AUR62032513 Chenopodium quinoa HOM05D001082 ORTHO05D005120 3.6e-71 273.5 499 35.1
arahy.Tifrunner.gnm1.ann1.CLUS6A Arachis hypogaea HOM05D001082 ORTHO05D005120 4.0e-70 270.0 447 37.8
Atru.chr12.2421 Acer truncatum HOM05D001082 ORTHO05D005120 5.2e-70 269.6 321 48.0
ATR0810G183 Amborella trichopoda HOM05D001082 ORTHO05D005120 1.6e-63 248.1 461 33.0
SEGI_00916 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 2.7e-58 230.7 450 33.1
CDE01G0790 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 6.2e-55 219.5 411 35.5
BcaC02g08127 Brassica carinata HOM05D001082 ORTHO05D005120 1.1e-54 218.8 109 100.0
ECA233G1839 Erigeron canadensis HOM05D001082 ORTHO05D005120 4.0e-54 216.9 505 31.3
BolC4t27334H Brassica oleracea HOM05D001082 ORTHO05D005120 1.5e-53 214.9 109 99.1
Cpa.g.sc21.218 Carica papaya HOM05D001082 ORTHO05D005120 3.4e-53 213.8 258 46.9
Zm00001eb232140 Zea mays HOM05D001082 ORTHO05D005120 3.4e-53 213.8 444 34.5
ClCG06G008350 Citrullus lanatus HOM05D001082 ORTHO05D005120 1.6e-47 194.9 266 40.6
MD05G1162400 Malus domestica HOM05D001082 ORTHO05D005120 4.8e-39 166.8 213 43.7
SEGI_15028 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 2.4e-38 164.5 262 37.4
AagrBONN_evm.TU.Sc2ySwM_362.2782 Anthoceros agrestis HOM05D001082 ORTHO05D005120 4.0e-38 163.7 462 29.2
Pp3c11_26590 Physcomitrium patens HOM05D001082 ORTHO05D005120 4.0e-38 163.7 459 27.7
Mapoly0008s0081 Marchantia polymorpha HOM05D001082 ORTHO05D005120 4.9e-36 156.8 445 28.3
VMungo0720G0600 Vigna mungo HOM05D001082 ORTHO05D010195 8.5e-28 129.4 176 44.3
Oeu010603.1 Olea europaea HOM05D001082 ORTHO05D005120 2.1e-26 124.8 567 24.7
ClCG06G008360 Citrullus lanatus HOM05D001082 ORTHO05D005120 1.0e-20 105.9 195 34.9
Psat4g135880 Pisum sativum HOM05D001082 ORTHO05D005120 2.5e-19 101.3 182 35.7
MD10G1160000 Malus domestica HOM05D001082 ORTHO05D005120 4.2e-19 100.5 185 33.0
VMungo0720G0348 Vigna mungo HOM05D001082 ORTHO05D005120 2.7e-18 97.8 149 36.9
Cpa.g.sc21.217 Carica papaya HOM05D001082 ORTHO05D005120 6.1e-18 96.7 75 62.7
MD05G1063300 Malus domestica HOM05D001082 ORTHO05D005120 7.9e-18 96.3 179 34.6
SMO239G0052 Selaginella moellendorffii HOM05D001082 ORTHO05D005120 2.3e-17 94.7 452 22.3
unitig_22.g5790 Utricularia gibba HOM05D001082 ORTHO05D005120 4.1e-14 84.0 193 31.1
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 9.1e-14 82.8 166 31.9
Cpa.g.sc21.222 Carica papaya HOM05D001082 ORTHO05D005120 4.7e-10 70.5 130 33.8
TAR339G0004 Trochodendron aralioides HOM05D001082 ORTHO05D005120 3.0e-09 67.8 97 42.3
MD07G1280900 Malus domestica HOM05D001082 ORTHO05D005120 6.7e-09 66.6 95 38.9
VMungo0720G1958 Vigna mungo HOM05D001082 ORTHO05D005120 8.8e-09 66.2 110 38.2
Hma1.2p1_0052F.1_g030140 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 3.3e-08 64.3 91 36.3
MD00G1034800 Malus domestica HOM05D001082 ORTHO05D005120 3.3e-08 64.3 95 37.9
BcaB06g28204 Brassica carinata HOM05D001082 ORTHO05D005120 2.8e-07 61.2 43 67.4
Solyc01g102550.4 Solanum lycopersicum HOM05D001082 ORTHO05D005120 2.8e-07 61.2 91 35.2


User provided reference genes

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