Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p57470 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 2054.6 1040 100.0
BcaC02g08190 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 2043.1 1043 99.6
BolC4t27268H Brassica oleracea HOM05D001082 ORTHO05D005120 0.0e+00 1976.4 1044 96.5
Sp1g28860 Schrenkiella parvula HOM05D001082 ORTHO05D005120 0.0e+00 1454.5 1035 75.4
BraA05t21326Z Brassica rapa HOM05D001082 ORTHO05D005120 0.0e+00 1439.1 1038 74.7
A05p24320 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 1419.8 1065 72.7
BcaB03g13701 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 1416.4 1033 74.3
BolC5t32536H Brassica oleracea HOM05D001082 ORTHO05D005120 0.0e+00 1412.5 1036 73.7
BcaC05g27806 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 1405.2 1034 73.9
C05p38080 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 1395.2 1065 71.6
CARHR032850 Cardamine hirsuta HOM05D001082 ORTHO05D005120 0.0e+00 1378.2 1036 71.7
AL1G47790 Arabidopsis lyrata HOM05D001082 ORTHO05D005120 0.0e+00 1377.5 1039 72.5
AT1G33410 Arabidopsis thaliana HOM05D001082 ORTHO05D005120 0.0e+00 1372.1 1041 71.8
Thhalv10006552m.g Eutrema salsugineum HOM05D001082 ORTHO05D005120 0.0e+00 1363.6 1042 71.5
Aa31LG6G7920 Aethionema arabicum HOM05D001082 ORTHO05D005120 0.0e+00 1193.3 1045 63.4
THA.LOC104806485 Tarenaya hassleriana HOM05D001082 ORTHO05D005120 0.0e+00 1129.8 1022 62.5
Carub.0001s3160 Capsella rubella HOM05D001082 ORTHO05D005120 0.0e+00 1094.0 802 72.4
BcaC02g08126 Brassica carinata HOM05D001082 ORTHO05D005120 1.0e-231 807.7 500 84.2
GSVIVG01015912001 Vitis vinifera HOM05D001082 ORTHO05D005120 1.4e-217 760.8 1022 45.4
Potri.001G078600 Populus trichocarpa HOM05D001082 ORTHO05D005120 2.0e-216 756.9 1032 45.2
Thecc.06G064200 Theobroma cacao HOM05D001082 ORTHO05D005120 5.9e-216 755.4 1011 45.0
CiPaw.02G126600 Carya illinoinensis HOM05D001082 ORTHO05D005120 9.4e-214 748.0 1019 44.1
COL.COLO4_31206 Corchorus olitorius HOM05D001082 ORTHO05D005120 8.8e-212 741.5 1018 44.1
Manes.15G096100 Manihot esculenta HOM05D001082 ORTHO05D005120 1.5e-211 740.7 1021 44.2
Cfa008545 Carpinus fangiana HOM05D001082 ORTHO05D005120 2.4e-209 733.4 1015 43.6
C04p58080 Brassica napus HOM05D001082 ORTHO05D005120 1.0e-207 728.0 451 83.6
Ciclev10000026m.g Citrus clementina HOM05D001082 ORTHO05D005120 2.9e-207 726.5 1021 43.5
Gorai.007G307100 Gossypium raimondii HOM05D001082 ORTHO05D005120 1.6e-205 720.7 1013 43.2
Dinv24538 Davidia involucrata HOM05D001082 ORTHO05D005120 7.5e-203 711.8 1026 42.8
TAR629G2955 Trochodendron aralioides HOM05D001082 ORTHO05D005120 1.2e-200 704.5 1019 41.9
Gohir.D11G284200 Gossypium hirsutum HOM05D001082 ORTHO05D005120 5.9e-200 702.2 944 44.3
Sabra01G0055900 Salix brachista HOM05D001082 ORTHO05D005120 5.0e-199 699.1 1129 40.7
QL10p065261 Quercus lobata HOM05D001082 ORTHO05D005120 1.9e-198 697.2 1058 43.2
TWI14G0841 Tripterygium wilfordii HOM05D001082 ORTHO05D005120 5.6e-198 695.7 1032 43.1
MD10G1009800 Malus domestica HOM05D001082 ORTHO05D005120 9.5e-198 694.9 1017 41.8
CANSAT78G0369 Cannabis sativa HOM05D001082 ORTHO05D005120 2.1e-197 693.7 1056 41.4
RcHm_v2.0_Chr2g0126921 Rosa chinensis HOM05D001082 ORTHO05D005120 8.0e-197 691.8 1004 42.9
vmacro01638 Vaccinium macrocarpon HOM05D001082 ORTHO05D005120 8.0e-197 691.8 1057 41.2
CSS0006928 Camellia sinensis var. sinensis HOM05D001082 ORTHO05D005120 1.8e-196 690.6 1016 42.2
FAN05G0906 Fragaria x ananassa HOM05D001082 ORTHO05D005120 8.9e-196 688.3 1056 42.1
FvH4_6g26400 Fragaria vesca HOM05D001082 ORTHO05D005120 4.4e-195 686.0 1010 42.7
Glyma.13G142200 Glycine max HOM05D001082 ORTHO05D005120 4.9e-194 682.6 1016 41.1
Glyma.10G055100 Glycine max HOM05D001082 ORTHO05D005120 7.8e-192 675.2 1020 41.3
Prupe.5G022000 Prunus persica HOM05D001082 ORTHO05D005120 1.2e-189 667.9 1035 41.3
Actinidia11712 Actinidia chinensis HOM05D001082 ORTHO05D005120 2.1e-189 667.2 978 41.6
PSO782G2901 Papaver somniferum HOM05D001082 ORTHO05D005120 4.0e-188 662.9 1016 41.0
PSO063G6006 Papaver somniferum HOM05D001082 ORTHO05D005120 8.9e-188 661.8 1026 40.7
Phvul.007G218900 Phaseolus vulgaris HOM05D001082 ORTHO05D005120 8.9e-188 661.8 1016 39.6
Psat6g073960 Pisum sativum HOM05D001082 ORTHO05D005120 8.9e-188 661.8 1020 39.9
RcHm_v2.0_Chr4g0402211 Rosa chinensis HOM05D001082 ORTHO05D005120 3.4e-187 659.8 1048 40.4
Sed0025950 Sechium edule HOM05D001082 ORTHO05D005120 1.3e-186 657.9 1017 40.6
EL10Ac6g13928 Beta vulgaris HOM05D001082 ORTHO05D005120 6.4e-186 655.6 1018 40.3
Nn3g20376 Nelumbo nucifera HOM05D001082 ORTHO05D005120 2.4e-185 653.7 1014 40.9
Ah.03g136660 Amaranthus hybridus HOM05D001082 ORTHO05D005120 3.2e-185 653.3 1066 39.5
Sopen01g044980 Solanum pennellii HOM05D001082 ORTHO05D005120 4.6e-184 649.4 1016 39.9
Migut.N00999 Erythranthe guttata HOM05D001082 ORTHO05D005120 6.0e-184 649.0 1027 40.4
Ca_11506_v3 Cicer arietinum L. HOM05D001082 ORTHO05D005120 7.8e-184 648.7 1031 40.4
Medtr1g063180 Medicago truncatula HOM05D001082 ORTHO05D005120 2.3e-183 647.1 1019 40.0
Lj5g0014962 Lotus japonicus HOM05D001082 ORTHO05D005120 8.6e-183 645.2 1013 39.9
Duzib235G1067 Durio zibethinus HOM05D001082 ORTHO05D005120 1.1e-182 644.8 828 44.4
MSTRG.5181 Avicennia marina HOM05D001082 ORTHO05D005120 4.3e-182 642.9 1044 40.0
Lj5C310G5 Lonicera japonica HOM05D001082 ORTHO05D005120 5.6e-182 642.5 1018 40.6
arahy.Tifrunner.gnm1.ann1.922X53 Arachis hypogaea HOM05D001082 ORTHO05D005120 9.5e-182 641.7 1032 38.5
arahy.Tifrunner.gnm1.ann1.Y1BA5Y Arachis hypogaea HOM05D001082 ORTHO05D005120 9.5e-182 641.7 1032 38.5
PGR042G2652 Punica granatum HOM05D001082 ORTHO05D005120 1.8e-180 637.5 1033 40.2
AUR62042820 Chenopodium quinoa HOM05D001082 ORTHO05D005120 8.9e-180 635.2 1075 37.8
Aqoxy5G03217 Aquilegia oxysepala HOM05D001082 ORTHO05D005120 1.2e-179 634.8 1026 40.7
MELO3C020407.2 Cucumis melo HOM05D001082 ORTHO05D005120 1.5e-179 634.4 1025 39.4
Sc07g0003370 Simmondsia chinensis HOM05D001082 ORTHO05D005120 1.5e-179 634.4 1016 39.9
TPR.G11274 Trifolium pratense HOM05D001082 ORTHO05D005120 1.7e-178 630.9 1037 39.2
Lalb_Chr21g0315021 Lupinus albus HOM05D001082 ORTHO05D005120 8.3e-178 628.6 1018 38.9
Peaxi162Scf00194g00732 Petunia axillaris HOM05D001082 ORTHO05D005120 2.4e-177 627.1 1041 38.9
CsaV3_2G011850 Cucumis sativus L. HOM05D001082 ORTHO05D005120 5.4e-177 625.9 1022 39.0
ECA238G2349 Erigeron canadensis HOM05D001082 ORTHO05D005120 2.7e-176 623.6 1031 38.6
HanXRQChr14g0452101 Helianthus annuus HOM05D001082 ORTHO05D005120 1.7e-175 620.9 1020 38.7
Nitab4.5_0000399g0040 Nicotiana tabacum HOM05D001082 ORTHO05D005120 4.3e-174 616.3 1021 38.7
Rhsim11G0112000 Rhododendron simsii HOM05D001082 ORTHO05D005120 1.6e-173 614.4 1027 38.9
SalBow1G7939 Salvia bowleyana HOM05D001082 ORTHO05D005120 2.1e-173 614.0 1061 38.2
SGA_v2.0_scaffold8G04471 Striga asiatica HOM05D001082 ORTHO05D005120 2.8e-173 613.6 1035 38.5
Gohir.A11G274000 Gossypium hirsutum HOM05D001082 ORTHO05D005120 5.2e-172 609.4 733 46.8
Lsat_1_v5_gn_7_54700 Lactuca sativa HOM05D001082 ORTHO05D005120 1.2e-165 588.2 1029 37.5
ECA233G1970 Erigeron canadensis HOM05D001082 ORTHO05D005120 4.7e-165 586.3 1078 36.8
Haze_11087 Corylus avellana HOM05D001082 ORTHO05D005120 3.1e-164 583.6 710 47.5
DCAR_003267 Daucus carota HOM05D001082 ORTHO05D005120 9.0e-164 582.0 1030 37.8
BolC4t27335H Brassica oleracea HOM05D001082 ORTHO05D005120 1.2e-163 581.6 392 79.6
Hma1.2p1_0052F.1_g030150 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 3.2e-161 573.5 735 45.3
arahy.Tifrunner.gnm1.ann1.CLUS6A Arachis hypogaea HOM05D001082 ORTHO05D005120 9.6e-158 562.0 1032 36.3
Nitab4.5_0004090g0140 Nicotiana tabacum HOM05D001082 ORTHO05D005120 1.2e-155 555.1 1009 37.1
AUR62032513 Chenopodium quinoa HOM05D001082 ORTHO05D005120 1.3e-149 535.0 1312 31.0
Lj3g0009617 Lotus japonicus HOM05D001082 ORTHO05D005120 1.7e-146 524.6 1014 35.7
Zm00001eb232140 Zea mays HOM05D001082 ORTHO05D005120 6.4e-146 522.7 1036 36.4
ECA233G1839 Erigeron canadensis HOM05D001082 ORTHO05D005120 5.5e-145 519.6 1068 34.5
ECA233G1393 Erigeron canadensis HOM05D001082 ORTHO05D005120 2.3e-135 487.6 978 34.2
Eucgr.G00034 Eucalyptus grandis HOM05D001082 ORTHO05D005120 5.1e-135 486.5 664 44.1
MD05G1161100 Malus domestica HOM05D001082 ORTHO05D005120 1.2e-131 475.3 609 45.6
ATR0810G183 Amborella trichopoda HOM05D001082 ORTHO05D005120 3.2e-129 467.2 1035 31.6
Solyc01g102540.3 Solanum lycopersicum HOM05D001082 ORTHO05D005120 4.2e-129 466.8 606 43.6
Hma1.2p1_0052F.1_g030160 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 9.4e-129 465.7 603 45.1
SEGI_00916 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 2.1e-128 464.5 1030 31.7
Atru.chr12.2421 Acer truncatum HOM05D001082 ORTHO05D005120 5.9e-123 446.4 624 44.4
SHI21156 Sapria himalayana HOM05D001082 ORTHO05D005120 8.5e-122 442.6 665 41.1
Oeu010602.3 Olea europaea HOM05D001082 ORTHO05D005120 3.9e-119 433.7 596 43.1
CAN.G1379.30 Capsicum annuum HOM05D001082 ORTHO05D005120 4.0e-103 380.6 478 44.6
CDE01G0790 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 1.7e-90 338.6 670 34.2
AagrBONN_evm.TU.Sc2ySwM_362.2782 Anthoceros agrestis HOM05D001082 ORTHO05D005120 1.2e-88 332.4 971 28.6
Pp3c11_26590 Physcomitrium patens HOM05D001082 ORTHO05D005120 8.0e-88 329.7 1039 28.6
Mapoly0008s0081 Marchantia polymorpha HOM05D001082 ORTHO05D005120 1.9e-81 308.5 1045 27.1
Cpa.g.sc21.218 Carica papaya HOM05D001082 ORTHO05D005120 1.1e-65 256.1 297 48.1
ClCG06G008350 Citrullus lanatus HOM05D001082 ORTHO05D005120 1.4e-60 239.2 348 41.7
MD05G1162400 Malus domestica HOM05D001082 ORTHO05D005120 1.7e-58 232.3 312 44.6
Oeu010603.1 Olea europaea HOM05D001082 ORTHO05D005120 3.4e-54 218.0 300 42.3
SMO239G0052 Selaginella moellendorffii HOM05D001082 ORTHO05D005120 2.4e-52 211.8 902 25.3
SEGI_15028 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 4.8e-48 197.6 358 35.2
Cpa.g.sc21.217 Carica papaya HOM05D001082 ORTHO05D005120 1.8e-47 195.7 212 51.9
ClCG06G008360 Citrullus lanatus HOM05D001082 ORTHO05D005120 1.9e-44 185.7 296 39.5
BcaB06g28204 Brassica carinata HOM05D001082 ORTHO05D005120 1.2e-43 183.0 168 63.1
CBR_g55211 Chara braunii HOM05D000019 ORTHO05D000048 7.9e-43 180.3 684 24.9
ClCG06G008340 Citrullus lanatus HOM05D001082 ORTHO05D005120 1.1e-39 169.9 549 29.0
VMungo0720G1958 Vigna mungo HOM05D001082 ORTHO05D005120 6.4e-37 160.6 473 30.9
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 7.9e-35 153.7 260 40.0
Cpa.g.sc21.222 Carica papaya HOM05D001082 ORTHO05D005120 5.1e-34 151.0 280 40.4
MD05G1161300 Malus domestica HOM05D001082 ORTHO05D005120 2.5e-33 148.7 409 34.2
MD08G1158700 Malus domestica HOM05D001082 ORTHO05D005120 7.4e-33 147.1 285 34.0
Solyc01g102550.4 Solanum lycopersicum HOM05D001082 ORTHO05D005120 1.2e-30 139.8 299 35.1
CDE01G0761 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 1.9e-28 132.5 294 31.3
unitig_22.g5790 Utricularia gibba HOM05D001082 ORTHO05D005120 1.0e-26 126.7 793 23.5
VMungo0720G0600 Vigna mungo HOM05D001082 ORTHO05D010195 1.1e-25 123.2 193 39.9
BcaC02g08127 Brassica carinata HOM05D001082 ORTHO05D005120 1.5e-25 122.9 119 61.3
BolC4t27334H Brassica oleracea HOM05D001082 ORTHO05D005120 1.9e-25 122.5 119 61.3
SEGI_12765 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 1.9e-25 122.5 238 34.5
CAN.G1379.29 Capsicum annuum HOM05D001082 ORTHO05D005120 4.3e-25 121.3 462 26.4
MD10G1160000 Malus domestica HOM05D001082 ORTHO05D005120 1.4e-23 116.3 194 39.2
Hma1.2p1_0052F.1_g030140 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 4.5e-22 111.3 220 37.7
SEGI_20053 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 3.8e-21 108.2 309 27.2
MD05G1063300 Malus domestica HOM05D001082 ORTHO05D005120 1.1e-20 106.7 178 41.0
SHI21155 Sapria himalayana HOM05D001082 ORTHO05D005120 1.8e-18 99.4 192 37.0
Psat4g135880 Pisum sativum HOM05D001082 ORTHO05D005120 3.0e-18 98.6 180 37.8
TAR339G0004 Trochodendron aralioides HOM05D001082 ORTHO05D005120 3.0e-18 98.6 234 31.2
VMungo0720G0348 Vigna mungo HOM05D001082 ORTHO05D005120 1.5e-17 96.3 141 36.9
VMungo0720G2272 Vigna mungo HOM05D001082 ORTHO05D005120 3.1e-15 88.6 123 41.5
VMungo0720G0635 Vigna mungo HOM05D001082 ORTHO05D000001 2.0e-14 85.9 87 50.6
Atru.chr12.2422 Acer truncatum HOM05D001082 ORTHO05D005120 2.6e-14 85.5 78 55.1
Atru.chr6.17 Acer truncatum HOM05D001082 ORTHO05D005120 5.9e-14 84.3 77 54.5
ECA233G2822 Erigeron canadensis HOM05D001082 ORTHO05D005120 3.6e-11 75.1 86 47.7
C04p58090 Brassica napus HOM05D001082 ORTHO05D102233 1.4e-10 73.2 41 97.6
MD07G1280900 Malus domestica HOM05D001082 ORTHO05D005120 1.1e-09 70.1 95 45.3
MD00G1034800 Malus domestica HOM05D001082 ORTHO05D005120 5.7e-09 67.8 95 44.2
unitig_22.g5791 Utricularia gibba HOM05D001082 ORTHO05D005120 2.8e-08 65.5 92 44.6


User provided reference genes

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