Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p38170 Brassica napus HOM05D000104 ORTHO05D004363 4.5e-113 411.4 225 100.0
BcaC02g09076 Brassica carinata HOM05D000104 ORTHO05D004363 1.9e-71 273.1 192 78.6
BraA09t40189Z Brassica rapa HOM05D000104 ORTHO05D004363 1.2e-70 270.4 192 77.6
Sp5g08110 Schrenkiella parvula HOM05D000104 ORTHO05D004363 1.8e-69 266.5 192 76.6
Thhalv10010052m.g Eutrema salsugineum HOM05D000104 ORTHO05D004363 4.0e-69 265.4 192 76.0
A09p47280 Brassica napus HOM05D000104 ORTHO05D004363 2.6e-68 262.7 192 75.5
C08p29510 Brassica napus HOM05D000104 ORTHO05D004363 2.2e-67 259.6 192 74.5
BolC8t50557H Brassica oleracea HOM05D000104 ORTHO05D004363 2.2e-67 259.6 192 74.5
CARHR164200 Cardamine hirsuta HOM05D000104 ORTHO05D004363 7.1e-66 254.6 192 74.0
AT3G54280 Arabidopsis thaliana HOM05D000104 ORTHO05D004363 3.5e-65 252.3 192 72.9
AL5G35320 Arabidopsis lyrata HOM05D000104 ORTHO05D004363 7.8e-65 251.1 192 72.4
Carub.0005s2087 Capsella rubella HOM05D000104 ORTHO05D004363 3.0e-64 249.2 192 71.9
Aa31sc392G40 Aethionema arabicum HOM05D000104 ORTHO05D004363 1.4e-61 240.4 192 69.3
THA.LOC104819143 Tarenaya hassleriana HOM05D000104 ORTHO05D004363 4.0e-53 212.2 192 61.5
Duzib128G0660 Durio zibethinus HOM05D000104 ORTHO05D004363 1.3e-51 207.2 192 58.3
Duzib177G0255 Durio zibethinus HOM05D000104 ORTHO05D004363 1.7e-51 206.8 192 58.3
Thecc.05G236400 Theobroma cacao HOM05D000104 ORTHO05D004363 1.7e-51 206.8 192 57.3
Manes.08G155800 Manihot esculenta HOM05D000104 ORTHO05D004363 1.9e-50 203.4 192 58.3
COL.COLO4_33474 Corchorus olitorius HOM05D000104 ORTHO05D004363 3.2e-50 202.6 192 57.8
Atru.chr2.1616 Acer truncatum HOM05D000104 ORTHO05D004363 4.2e-50 202.2 192 58.9
Potri.013G068400 Populus trichocarpa HOM05D000104 ORTHO05D004363 1.6e-49 200.3 192 57.8
CSS0023365 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D004363 2.7e-49 199.5 192 57.8
Gohir.D13G165000 Gossypium hirsutum HOM05D000104 ORTHO05D004363 1.3e-48 197.2 192 56.2
Gorai.013G197700 Gossypium raimondii HOM05D000104 ORTHO05D004363 1.8e-48 196.8 192 56.2
GSVIVG01019359001 Vitis vinifera HOM05D000104 ORTHO05D004363 1.8e-48 196.8 204 55.4
Gohir.A13G159800 Gossypium hirsutum HOM05D000104 ORTHO05D004363 2.3e-48 196.4 192 56.2
Actinidia03314 Actinidia chinensis HOM05D000104 ORTHO05D004363 3.0e-48 196.1 192 57.8
TWI32G0549 Tripterygium wilfordii HOM05D000104 ORTHO05D004363 3.0e-48 196.1 192 55.2
Lj3g0018732 Lotus japonicus HOM05D000104 ORTHO05D004363 4.3e-47 192.2 183 59.6
Medtr4g035100 Medicago truncatula HOM05D000104 ORTHO05D004363 7.4e-47 191.4 183 58.5
TPR.G31923 Trifolium pratense HOM05D000104 ORTHO05D004363 7.4e-47 191.4 183 58.5
Dinv09441 Davidia involucrata HOM05D000104 ORTHO05D004363 9.6e-47 191.0 192 54.7
Ciclev10030472m.g Citrus clementina HOM05D000104 ORTHO05D004363 1.6e-46 190.3 192 55.2
PGR083G0814 Punica granatum HOM05D000104 ORTHO05D004363 1.6e-46 190.3 192 54.7
Psat7g148080 Pisum sativum HOM05D000104 ORTHO05D004363 8.1e-46 188.0 183 57.9
VMungo1127G2256 Vigna mungo HOM05D000104 ORTHO05D004363 1.8e-45 186.8 183 57.9
Sopen08g023150 Solanum pennellii HOM05D000104 ORTHO05D004363 2.4e-45 186.4 192 55.7
Ca_19676_v3 Cicer arietinum L. HOM05D000104 ORTHO05D004363 4.0e-45 185.7 183 57.4
Solyc08g074520.2 Solanum lycopersicum HOM05D000104 ORTHO05D004363 4.0e-45 185.7 192 55.7
MSTRG.11830 Avicennia marina HOM05D000104 ORTHO05D004363 5.3e-45 185.3 192 52.6
Prupe.6G000100 Prunus persica HOM05D000104 ORTHO05D004363 6.9e-45 184.9 192 54.7
Migut.A00510 Erythranthe guttata HOM05D000104 ORTHO05D004363 1.2e-44 184.1 192 51.6
Phvul.011G002900 Phaseolus vulgaris HOM05D000104 ORTHO05D004363 1.2e-44 184.1 183 57.4
Dinv37465 Davidia involucrata HOM05D000104 ORTHO05D004363 1.5e-44 183.7 192 53.6
Glyma.12G002300 Glycine max HOM05D000104 ORTHO05D004363 1.5e-44 183.7 183 56.8
Glyma.09G234400 Glycine max HOM05D000104 ORTHO05D004363 2.0e-44 183.3 183 56.8
Cfa017683 Carpinus fangiana HOM05D000104 ORTHO05D004363 2.6e-44 183.0 183 56.3
Lalb_Chr01g0000141 Lupinus albus HOM05D000104 ORTHO05D004363 2.6e-44 183.0 183 56.3
SalBow4G3014 Salvia bowleyana HOM05D000104 ORTHO05D004363 2.6e-44 183.0 192 52.6
Peaxi162Scf00213g01732 Petunia axillaris HOM05D000104 ORTHO05D004363 5.8e-44 181.8 182 57.7
Oeu007492.1 Olea europaea HOM05D000104 ORTHO05D004363 1.0e-43 181.0 192 54.2
arahy.Tifrunner.gnm1.ann1.YM0GIL Arachis hypogaea HOM05D000104 ORTHO05D004363 1.3e-43 180.6 183 55.2
ClCG05G011380 Citrullus lanatus HOM05D000104 ORTHO05D004363 1.3e-43 180.6 192 52.1
PSO832G0838 Papaver somniferum HOM05D000104 ORTHO05D004363 1.7e-43 180.3 193 53.9
MELO3C020235.2 Cucumis melo HOM05D000104 ORTHO05D004363 2.2e-43 179.9 192 52.1
arahy.Tifrunner.gnm1.ann1.64GWQS Arachis hypogaea HOM05D000104 ORTHO05D004363 2.9e-43 179.5 183 55.2
Cc11_g04400 Coffea canephora HOM05D000104 ORTHO05D004363 3.8e-43 179.1 193 54.9
RcHm_v2.0_Chr5g0084181 Rosa chinensis HOM05D000104 ORTHO05D004363 3.8e-43 179.1 192 53.1
SGA_v2.0_scaffold27G11711 Striga asiatica HOM05D000104 ORTHO05D004363 6.5e-43 178.3 192 51.0
MD03G1000600 Malus domestica HOM05D000104 ORTHO05D004363 1.1e-42 177.6 192 52.1
CsaV3_3G021040 Cucumis sativus L. HOM05D000104 ORTHO05D004363 1.4e-42 177.2 192 51.6
CsaV3_4G017740 Cucumis sativus L. HOM05D000104 ORTHO05D004363 1.4e-42 177.2 192 51.6
FAN21G1945 Fragaria x ananassa HOM05D000104 ORTHO05D004363 3.2e-42 176.0 192 52.6
Sed0011777 Sechium edule HOM05D000104 ORTHO05D004363 3.2e-42 176.0 192 52.6
FvH4_3g46101 Fragaria vesca HOM05D000104 ORTHO05D004363 4.2e-42 175.6 192 52.1
Eucgr.D01125 Eucalyptus grandis HOM05D000104 ORTHO05D004363 4.6e-41 172.2 192 50.5
MD11G1000100 Malus domestica HOM05D000104 ORTHO05D004363 1.3e-40 170.6 192 51.0
Nn3g17003 Nelumbo nucifera HOM05D000104 ORTHO05D004363 1.3e-40 170.6 192 52.1
DCAR_002184 Daucus carota HOM05D007440 ORTHO05D004363 3.0e-40 169.5 192 50.0
vmacro00211 Vaccinium macrocarpon HOM05D000104 ORTHO05D004363 3.0e-40 169.5 227 47.6
Aqoxy7G00075 Aquilegia oxysepala HOM05D000104 ORTHO05D004363 6.7e-40 168.3 193 50.8
CANSAT35G1590 Cannabis sativa HOM05D000104 ORTHO05D004363 6.7e-40 168.3 192 51.0
Lsat_1_v5_gn_5_59321 Lactuca sativa HOM05D000104 ORTHO05D004363 9.6e-39 164.5 192 49.5
HanXRQChr03g0082351 Helianthus annuus HOM05D000104 ORTHO05D004363 1.6e-38 163.7 192 49.5
CAN.G195.25 Capsicum annuum HOM05D000104 ORTHO05D004363 2.1e-38 163.3 139 62.6
ECA240G3782 Erigeron canadensis HOM05D000104 ORTHO05D004363 2.8e-38 162.9 192 49.5
Nitab4.5_0002482g0010 Nicotiana tabacum HOM05D000104 ORTHO05D004363 3.7e-38 162.5 132 65.9
SGA_v2.0_scaffold447G51747 Striga asiatica HOM05D000104 ORTHO05D004363 3.7e-38 162.5 132 62.1
SGA_v2.0_scaffold269G46291 Striga asiatica HOM05D000104 ORTHO05D004363 1.1e-37 161.0 135 60.0
Hma1.2p1_0268F.1_g107680 Hydrangea macrophylla HOM05D000104 ORTHO05D004363 9.0e-37 157.9 137 62.8
ATR0665G650 Amborella trichopoda HOM05D000104 ORTHO05D004363 2.0e-36 156.8 185 51.4
FAN16G0934 Fragaria x ananassa HOM05D000104 ORTHO05D004363 2.6e-36 156.4 199 48.2
HPP92_015726 Vanilla planifolia HOM05D000104 ORTHO05D004363 3.4e-36 156.0 195 49.7
SHI06790 Sapria himalayana HOM05D000190 ORTHO05D004363 3.8e-35 152.5 192 46.4
CDE06G1340 Ceratophyllum demersum HOM05D000104 ORTHO05D004363 1.1e-34 151.0 194 45.9
QL09p044755 Quercus lobata HOM05D000104 ORTHO05D004363 4.2e-34 149.1 133 60.9
Zm00001eb297280 Zea mays HOM05D000104 ORTHO05D004363 1.6e-33 147.1 194 47.9
AUR62014777 Chenopodium quinoa HOM05D000104 ORTHO05D004363 4.6e-33 145.6 194 47.4
AUR62016963 Chenopodium quinoa HOM05D000104 ORTHO05D004363 7.9e-33 144.8 194 47.4
SEGI_24237 Sequoiadendron giganteum HOM05D000104 ORTHO05D004363 1.0e-32 144.4 185 48.6
Hund23685 Selenicereus undatus HOM05D000104 ORTHO05D004363 1.9e-31 140.2 195 46.7
Sc05g0007890 Simmondsia chinensis HOM05D000104 ORTHO05D004363 2.2e-30 136.7 193 46.6
AagrBONN_evm.TU.Sc2ySwM_228.1549 Anthoceros agrestis HOM05D000104 ORTHO05D004363 2.4e-29 133.3 193 43.5
Mapoly0038s0059 Marchantia polymorpha HOM05D000104 ORTHO05D004363 9.0e-29 131.3 196 44.4
Lj7C413G9 Lonicera japonica HOM05D000104 ORTHO05D004363 1.2e-28 131.0 144 50.7
unitig_92.g28135 Utricularia gibba HOM05D000104 ORTHO05D004363 1.2e-28 131.0 169 46.2
Nitab4.5_0001131g0020 Nicotiana tabacum HOM05D000104 ORTHO05D004363 2.6e-28 129.8 91 71.4
Pp3c3_11220 Physcomitrium patens HOM05D000104 ORTHO05D004363 2.6e-28 129.8 194 44.3
Sabra13G0059700 Salix brachista HOM05D000104 ORTHO05D004363 1.3e-27 127.5 166 47.6
unitig_93.g30710 Utricularia gibba HOM05D000104 ORTHO05D004363 3.8e-27 125.9 152 46.1
Ah.14g089210 Amaranthus hybridus HOM05D000104 ORTHO05D004363 3.0e-24 116.3 193 40.9
SMO223G0022 Selaginella moellendorffii HOM05D000104 ORTHO05D004363 2.8e-22 109.8 193 40.9
Rhsim03G0207500 Rhododendron simsii HOM05D000104 ORTHO05D004363 1.1e-21 107.8 356 29.8
Haze_20467 Corylus avellana HOM05D000104 ORTHO05D004363 4.5e-20 102.4 91 60.4
CBR_g57043 Chara braunii HOM05D000104 ORTHO05D004363 3.6e-17 92.8 218 34.9
MCO02G056 Micromonas commoda HOM05D000104 ORTHO05D004363 3.8e-11 72.8 131 35.9
Cre16.g687301 Chlamydomonas reinhardtii HOM05D000104 ORTHO05D004363 1.2e-09 67.8 184 29.9
CiPaw.09G169600 Carya illinoinensis HOM05D000104 ORTHO05D004363 4.7e-09 65.9 109 39.4
BraA04t16249Z Brassica rapa HOM05D000104 ORTHO05D004363 1.0e-08 64.7 42 78.6
BolC4t25392H Brassica oleracea HOM05D000104 ORTHO05D004363 5.2e-08 62.4 73 65.8


User provided reference genes

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