Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p38150 Brassica napus HOM05D000104 ORTHO05D004363 6.3e-97 357.5 184 100.0
C08p29510 Brassica napus HOM05D000104 ORTHO05D004363 9.6e-69 263.8 150 91.3
Sp5g08110 Schrenkiella parvula HOM05D000104 ORTHO05D004363 2.1e-68 262.7 150 92.7
BolC8t50557H Brassica oleracea HOM05D000104 ORTHO05D004363 2.8e-68 262.3 150 90.7
A09p47280 Brassica napus HOM05D000104 ORTHO05D004363 4.7e-68 261.5 150 90.7
BraA09t40189Z Brassica rapa HOM05D000104 ORTHO05D004363 4.7e-68 261.5 150 90.7
Thhalv10010052m.g Eutrema salsugineum HOM05D000104 ORTHO05D004363 1.8e-67 259.6 150 91.3
AL5G35320 Arabidopsis lyrata HOM05D000104 ORTHO05D004363 1.2e-66 256.9 150 90.7
AT3G54280 Arabidopsis thaliana HOM05D000104 ORTHO05D004363 1.2e-66 256.9 150 90.0
Aa31sc392G40 Aethionema arabicum HOM05D000104 ORTHO05D004363 1.7e-65 253.1 151 90.7
Carub.0005s2087 Capsella rubella HOM05D000104 ORTHO05D004363 1.7e-65 253.1 150 89.3
CARHR164200 Cardamine hirsuta HOM05D000104 ORTHO05D004363 1.7e-65 253.1 181 76.8
THA.LOC104819143 Tarenaya hassleriana HOM05D000104 ORTHO05D004363 4.9e-57 224.9 150 77.3
Duzib177G0255 Durio zibethinus HOM05D000104 ORTHO05D004363 3.1e-51 205.7 150 70.7
Duzib128G0660 Durio zibethinus HOM05D000104 ORTHO05D004363 4.0e-51 205.3 150 71.3
PGR083G0814 Punica granatum HOM05D000104 ORTHO05D004363 4.5e-50 201.8 150 70.0
Gorai.013G197700 Gossypium raimondii HOM05D000104 ORTHO05D004363 5.8e-50 201.4 150 71.3
TWI32G0549 Tripterygium wilfordii HOM05D000104 ORTHO05D004363 5.8e-50 201.4 150 71.3
Gohir.D13G165000 Gossypium hirsutum HOM05D000104 ORTHO05D004363 1.3e-49 200.3 150 70.7
Gohir.A13G159800 Gossypium hirsutum HOM05D000104 ORTHO05D004363 6.4e-49 198.0 150 70.0
GSVIVG01019359001 Vitis vinifera HOM05D000104 ORTHO05D004363 1.9e-48 196.4 150 68.0
CSS0023365 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D004363 2.4e-48 196.1 150 70.0
Potri.013G068400 Populus trichocarpa HOM05D000104 ORTHO05D004363 3.2e-48 195.7 150 71.3
Thecc.05G236400 Theobroma cacao HOM05D000104 ORTHO05D004363 4.2e-48 195.3 150 69.3
Atru.chr2.1616 Acer truncatum HOM05D000104 ORTHO05D004363 5.4e-48 194.9 150 72.0
MELO3C020235.2 Cucumis melo HOM05D000104 ORTHO05D004363 4.6e-47 191.8 150 68.0
FAN11G0644 Fragaria x ananassa HOM05D000104 ORTHO05D004363 4.6e-47 191.8 150 66.7
Dinv09442 Davidia involucrata HOM05D000104 ORTHO05D004363 7.9e-47 191.0 150 70.7
Manes.08G155800 Manihot esculenta HOM05D000104 ORTHO05D004363 7.9e-47 191.0 150 68.7
ClCG05G011380 Citrullus lanatus HOM05D000104 ORTHO05D004363 1.3e-46 190.3 150 69.3
RcHm_v2.0_Chr5g0084181 Rosa chinensis HOM05D000104 ORTHO05D004363 1.3e-46 190.3 150 66.7
FvH4_3g46101 Fragaria vesca HOM05D000104 ORTHO05D004363 3.0e-46 189.1 150 66.0
Sed0011777 Sechium edule HOM05D000104 ORTHO05D004363 3.9e-46 188.7 150 68.0
FAN16G0934 Fragaria x ananassa HOM05D000104 ORTHO05D004363 5.1e-46 188.3 150 66.0
FAN21G1945 Fragaria x ananassa HOM05D000104 ORTHO05D004363 5.1e-46 188.3 150 66.0
Dinv37465 Davidia involucrata HOM05D000104 ORTHO05D004363 8.7e-46 187.6 150 68.7
Actinidia03314 Actinidia chinensis HOM05D000104 ORTHO05D004363 1.1e-45 187.2 150 68.7
Eucgr.D01125 Eucalyptus grandis HOM05D000104 ORTHO05D004363 1.1e-45 187.2 150 67.3
Prupe.6G000100 Prunus persica HOM05D000104 ORTHO05D004363 1.5e-45 186.8 150 66.7
Ciclev10030472m.g Citrus clementina HOM05D000104 ORTHO05D004363 1.9e-45 186.4 150 67.3
VMungo1127G2256 Vigna mungo HOM05D000104 ORTHO05D004363 1.9e-45 186.4 150 68.7
Nn3g17003 Nelumbo nucifera HOM05D000104 ORTHO05D004363 3.3e-45 185.7 150 66.7
COL.COLO4_33474 Corchorus olitorius HOM05D000104 ORTHO05D004363 5.6e-45 184.9 150 68.0
DCAR_002184 Daucus carota HOM05D007440 ORTHO05D004363 5.6e-45 184.9 172 62.2
Lalb_Chr01g0000141 Lupinus albus HOM05D000104 ORTHO05D004363 5.6e-45 184.9 151 68.2
Glyma.12G002300 Glycine max HOM05D000104 ORTHO05D004363 7.4e-45 184.5 150 68.7
Lsat_1_v5_gn_5_59321 Lactuca sativa HOM05D000104 ORTHO05D004363 7.4e-45 184.5 150 67.3
Glyma.09G234400 Glycine max HOM05D000104 ORTHO05D004363 9.6e-45 184.1 150 68.0
Lj3g0018732 Lotus japonicus HOM05D000104 ORTHO05D004363 9.6e-45 184.1 150 66.0
HPP92_015726 Vanilla planifolia HOM05D000104 ORTHO05D004363 1.3e-44 183.7 150 66.7
PSO832G0838 Papaver somniferum HOM05D000104 ORTHO05D004363 1.6e-44 183.3 150 67.3
CDE06G1340 Ceratophyllum demersum HOM05D000104 ORTHO05D004363 2.1e-44 183.0 150 65.3
Migut.A00510 Erythranthe guttata HOM05D000104 ORTHO05D004363 2.1e-44 183.0 150 66.0
MD11G1000100 Malus domestica HOM05D000104 ORTHO05D004363 2.8e-44 182.6 150 66.0
Ah.14g089210 Amaranthus hybridus HOM05D000104 ORTHO05D004363 1.1e-43 180.6 150 65.3
Aqoxy7G00075 Aquilegia oxysepala HOM05D000104 ORTHO05D004363 1.1e-43 180.6 150 67.3
Psat7g148080 Pisum sativum HOM05D000104 ORTHO05D004363 1.1e-43 180.6 150 68.0
Lj7C413G9 Lonicera japonica HOM05D000104 ORTHO05D004363 1.4e-43 180.3 150 68.0
ATR0665G650 Amborella trichopoda HOM05D000104 ORTHO05D004363 2.4e-43 179.5 172 61.0
Phvul.011G002900 Phaseolus vulgaris HOM05D000104 ORTHO05D004363 2.4e-43 179.5 150 66.7
Sc05g0007890 Simmondsia chinensis HOM05D000104 ORTHO05D004363 2.4e-43 179.5 170 61.2
Ca_19676_v3 Cicer arietinum L. HOM05D000104 ORTHO05D004363 4.0e-43 178.7 150 66.7
ECA240G3782 Erigeron canadensis HOM05D000104 ORTHO05D004363 4.0e-43 178.7 150 64.7
Hund23685 Selenicereus undatus HOM05D000104 ORTHO05D004363 4.0e-43 178.7 150 64.7
SGA_v2.0_scaffold269G46291 Striga asiatica HOM05D000104 ORTHO05D004363 4.0e-43 178.7 151 65.6
Medtr4g035100 Medicago truncatula HOM05D000104 ORTHO05D004363 6.9e-43 177.9 150 68.0
ATR0559G230 Amborella trichopoda HOM05D000104 ORTHO05D004363 1.5e-42 176.8 150 66.0
Cc11_g04400 Coffea canephora HOM05D000104 ORTHO05D004363 1.5e-42 176.8 150 64.7
HanXRQChr03g0082351 Helianthus annuus HOM05D000104 ORTHO05D004363 1.5e-42 176.8 150 65.3
TPR.G31923 Trifolium pratense HOM05D000104 ORTHO05D004363 2.0e-42 176.4 150 67.3
CiPaw.09G169600 Carya illinoinensis HOM05D000104 ORTHO05D004363 2.6e-42 176.0 152 65.8
Sopen08g023150 Solanum pennellii HOM05D000104 ORTHO05D004363 2.6e-42 176.0 150 64.0
CANSAT35G1590 Cannabis sativa HOM05D000104 ORTHO05D004363 4.5e-42 175.3 152 65.8
SGA_v2.0_scaffold27G11711 Striga asiatica HOM05D000104 ORTHO05D004363 4.5e-42 175.3 151 64.9
arahy.Tifrunner.gnm1.ann1.64GWQS Arachis hypogaea HOM05D000104 ORTHO05D004363 5.8e-42 174.9 150 63.3
Cfa017683 Carpinus fangiana HOM05D000104 ORTHO05D004363 5.8e-42 174.9 150 65.3
SalBow4G3014 Salvia bowleyana HOM05D000104 ORTHO05D004363 5.8e-42 174.9 150 63.3
QL09p044755 Quercus lobata HOM05D000104 ORTHO05D004363 1.0e-41 174.1 150 65.3
MSTRG.11830 Avicennia marina HOM05D000104 ORTHO05D004363 2.9e-41 172.6 150 63.3
unitig_92.g28135 Utricularia gibba HOM05D000104 ORTHO05D004363 6.5e-41 171.4 152 63.2
unitig_93.g30711 Utricularia gibba HOM05D000104 ORTHO05D004363 6.5e-41 171.4 152 63.2
AUR62016963 Chenopodium quinoa HOM05D000104 ORTHO05D004363 1.1e-40 170.6 150 62.0
Nitab4.5_0002482g0020 Nicotiana tabacum HOM05D000104 ORTHO05D004363 1.4e-40 170.2 150 64.0
Zm00001eb297280 Zea mays HOM05D000104 ORTHO05D004363 5.5e-40 168.3 150 61.3
Sabra13G0059700 Salix brachista HOM05D000104 ORTHO05D004363 2.1e-39 166.4 211 50.2
AUR62014777 Chenopodium quinoa HOM05D000104 ORTHO05D004363 3.5e-39 165.6 150 60.0
SEGI_24237 Sequoiadendron giganteum HOM05D000104 ORTHO05D004363 6.2e-36 154.8 150 57.3
Mapoly0038s0059 Marchantia polymorpha HOM05D000104 ORTHO05D004363 2.6e-34 149.4 152 55.9
Pp3c3_11220 Physcomitrium patens HOM05D000104 ORTHO05D004363 1.3e-33 147.1 153 55.6
SMO223G0022 Selaginella moellendorffii HOM05D000104 ORTHO05D004363 8.4e-33 144.4 150 54.0
AagrBONN_evm.TU.Sc2ySwM_228.1549 Anthoceros agrestis HOM05D000104 ORTHO05D004363 1.8e-30 136.7 153 54.2
CBR_g57043 Chara braunii HOM05D000104 ORTHO05D004363 1.4e-27 127.1 157 49.7
CsaV3_4G017750 Cucumis sativus L. HOM05D000104 ORTHO05D004363 1.7e-25 120.2 122 59.8
Haze_20464 Corylus avellana HOM05D000104 ORTHO05D004363 2.9e-25 119.4 177 48.6
CsaV3_3G021050 Cucumis sativus L. HOM05D000104 ORTHO05D004363 4.2e-24 115.5 95 68.4
MD03G1000900 Malus domestica HOM05D000104 ORTHO05D004363 2.1e-23 113.2 99 61.6
Cpa.g.sc73.37 Carica papaya HOM05D000104 ORTHO05D004363 4.6e-23 112.1 69 85.5
Oeu007492.1 Olea europaea HOM05D000104 ORTHO05D004363 2.0e-21 106.7 69 82.6
vmacro00211 Vaccinium macrocarpon HOM05D000104 ORTHO05D004363 2.0e-21 106.7 69 79.7
Peaxi162Scf00213g01732 Petunia axillaris HOM05D000104 ORTHO05D004363 2.5e-21 106.3 69 81.2
Nitab4.5_0023622g0010 Nicotiana tabacum HOM05D000104 ORTHO05D004363 4.3e-21 105.5 69 79.7
CAN.G195.24 Capsicum annuum HOM05D000104 ORTHO05D004363 1.3e-20 104.0 69 78.3
Oeu026040.2 Olea europaea HOM05D000104 ORTHO05D004363 1.3e-20 104.0 96 59.4
Solyc08g074520.2 Solanum lycopersicum HOM05D000104 ORTHO05D004363 4.8e-20 102.1 69 75.4
SHI06790 Sapria himalayana HOM05D000190 ORTHO05D004363 3.4e-18 95.9 142 51.4
Lsat_1_v5_gn_7_28860 Lactuca sativa HOM05D000499 ORTHO05D006980 1.7e-17 93.6 69 71.0
BcaC02g09076 Brassica carinata HOM05D000104 ORTHO05D004363 6.5e-17 91.7 51 94.1
Cre16.g687301 Chlamydomonas reinhardtii HOM05D000104 ORTHO05D004363 1.8e-14 83.6 146 36.3
Cpa.g.sc73.36 Carica papaya HOM05D000104 ORTHO05D004363 6.7e-14 81.6 70 60.0
BolC4t25391H Brassica oleracea HOM05D000104 ORTHO05D004363 2.6e-13 79.7 43 97.7
vmacro00212 Vaccinium macrocarpon HOM05D000104 ORTHO05D004363 1.3e-12 77.4 104 50.0
Solyc08g074510.1 Solanum lycopersicum HOM05D000104 ORTHO05D004363 3.7e-12 75.9 80 53.8
Nitab4.5_0001131g0010 Nicotiana tabacum HOM05D000104 ORTHO05D004363 8.2e-12 74.7 80 53.8
Peaxi162Scf00213g01731 Petunia axillaris HOM05D000104 ORTHO05D004363 1.1e-11 74.3 79 53.2
CAN.G195.23 Capsicum annuum HOM05D000104 ORTHO05D004363 3.5e-10 69.3 79 51.9
MCO02G056 Micromonas commoda HOM05D000104 ORTHO05D004363 2.7e-07 59.7 150 32.0


User provided reference genes

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