Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p38110 Brassica napus HOM05D002790 ORTHO05D003033 1.1e-220 769.6 384 100.0
BcaC02g09071 Brassica carinata HOM05D002790 ORTHO05D003033 3.1e-170 602.1 311 96.5
BcaB02g08486 Brassica carinata HOM05D002790 ORTHO05D003033 6.9e-138 494.6 350 73.7
A04p05430 Brassica napus HOM05D002790 ORTHO05D003033 6.3e-131 471.5 335 76.4
BraA04t16245Z Brassica rapa HOM05D002790 ORTHO05D003033 6.3e-131 471.5 335 76.4
Sp5g08050 Schrenkiella parvula HOM05D002790 ORTHO05D003033 1.2e-126 457.2 342 73.4
BcaB02g07740 Brassica carinata HOM05D002790 ORTHO05D003033 1.4e-125 453.8 352 70.2
BcaC08g44678 Brassica carinata HOM05D002790 ORTHO05D003033 1.9e-119 433.3 349 68.2
C06p22110 Brassica napus HOM05D002790 ORTHO05D003033 1.9e-119 433.3 349 68.2
BolC6t37398H Brassica oleracea HOM05D002790 ORTHO05D003033 1.9e-119 433.3 349 68.2
Thhalv10010165m.g Eutrema salsugineum HOM05D002790 ORTHO05D003033 4.2e-119 432.2 340 70.0
A07p22070 Brassica napus HOM05D002790 ORTHO05D003033 1.6e-118 430.3 349 67.9
BraA07t29890Z Brassica rapa HOM05D002790 ORTHO05D003033 1.6e-118 430.3 349 67.9
BolC4t25386H Brassica oleracea HOM05D002790 ORTHO05D003033 4.7e-118 428.7 236 92.4
AL5G35390 Arabidopsis lyrata HOM05D002790 ORTHO05D003033 1.7e-104 383.6 346 63.9
Carub.0005s2094 Capsella rubella HOM05D002790 ORTHO05D003033 2.3e-104 383.3 345 63.5
AT3G54350 Arabidopsis thaliana HOM05D002790 ORTHO05D003033 2.1e-102 376.7 346 63.3
CARHR164260 Cardamine hirsuta HOM05D002790 ORTHO05D003033 8.3e-99 364.8 343 61.2
Aa31LG10G13840 Aethionema arabicum HOM05D002790 ORTHO05D003033 5.4e-90 335.5 342 56.7
Aa31LG3G4680 Aethionema arabicum HOM05D002790 ORTHO05D003033 5.4e-90 335.5 345 57.7
THA.LOC104813188 Tarenaya hassleriana HOM05D002790 ORTHO05D003033 8.1e-86 321.6 373 50.4
THA.LOC104823073 Tarenaya hassleriana HOM05D002790 ORTHO05D003033 2.6e-76 290.0 379 48.3
Cpa.g.sc140.15 Carica papaya HOM05D002790 ORTHO05D003033 7.2e-34 149.1 468 28.2
Manes.05G152900 Manihot esculenta HOM05D002790 ORTHO05D003033 4.6e-25 119.8 427 28.3
Sabra05G0180600 Salix brachista HOM05D002790 ORTHO05D003033 1.1e-23 115.2 447 25.7
TWI36G1564 Tripterygium wilfordii HOM05D002790 ORTHO05D003033 1.5e-23 114.8 454 26.7
Ciclev10000241m.g Citrus clementina HOM05D002790 ORTHO05D003033 2.6e-23 114.0 465 26.0
Potri.002G028300 Populus trichocarpa HOM05D002790 ORTHO05D003033 3.3e-23 113.6 469 25.4
Potri.005G234300 Populus trichocarpa HOM05D002790 ORTHO05D003033 4.4e-23 113.2 449 25.4
Duzib093G0905 Durio zibethinus HOM05D002790 ORTHO05D003033 6.3e-22 109.4 421 25.2
TWI12G1064 Tripterygium wilfordii HOM05D002790 ORTHO05D003033 8.2e-22 109.0 454 26.0
Thecc.08G037000 Theobroma cacao HOM05D002790 ORTHO05D003033 2.4e-21 107.5 459 23.7
Manes.18G018000 Manihot esculenta HOM05D002790 ORTHO05D003033 4.1e-21 106.7 443 26.6
GSVIVG01009819001 Vitis vinifera HOM05D002790 ORTHO05D003033 9.1e-21 105.5 220 37.3
COL.COLO4_26207 Corchorus olitorius HOM05D002790 ORTHO05D003033 1.2e-20 105.1 456 24.3
Sabra02G0022300 Salix brachista HOM05D002790 ORTHO05D003033 7.7e-20 102.4 466 24.0
Atru.chr13.365 Acer truncatum HOM05D002790 ORTHO05D003033 6.5e-19 99.4 484 24.2
Cfa013901 Carpinus fangiana HOM05D002790 ORTHO05D003033 6.5e-19 99.4 509 24.8
arahy.Tifrunner.gnm1.ann1.ZAY3TB Arachis hypogaea HOM05D002790 ORTHO05D003033 3.2e-18 97.1 424 25.0
arahy.Tifrunner.gnm1.ann1.6PK8GH Arachis hypogaea HOM05D002790 ORTHO05D003033 5.5e-18 96.3 424 25.0
CiPaw.07G154600 Carya illinoinensis HOM05D002790 ORTHO05D003033 4.7e-17 93.2 513 23.2
Haze_22581 Corylus avellana HOM05D002790 ORTHO05D003033 4.7e-17 93.2 485 25.4
Lalb_Chr23g0266311 Lupinus albus HOM05D002790 ORTHO05D003033 6.1e-17 92.8 409 26.7
Duzib116G0605 Durio zibethinus HOM05D002790 ORTHO05D003033 1.4e-16 91.7 463 24.8
QL08p045938 Quercus lobata HOM05D002790 ORTHO05D003033 1.8e-16 91.3 206 35.4
QL09p025225 Quercus lobata HOM05D002790 ORTHO05D003033 1.8e-16 91.3 206 35.4
Prupe.1G371200 Prunus persica HOM05D002790 ORTHO05D003033 6.7e-16 89.4 239 34.7
CANSAT25G2720 Cannabis sativa HOM05D002790 ORTHO05D003033 2.0e-15 87.8 196 34.7
Gohir.D01G100700 Gossypium hirsutum HOM05D002790 ORTHO05D003033 2.0e-15 87.8 460 22.6
Solyc07g032510.3 Solanum lycopersicum HOM05D002790 ORTHO05D003033 2.6e-15 87.4 231 31.6
Sopen07g015370 Solanum pennellii HOM05D000004 ORTHO05D000002 2.6e-15 87.4 226 31.4
arahy.Tifrunner.gnm1.ann1.NZLE3F Arachis hypogaea HOM05D002790 ORTHO05D003033 4.4e-15 86.7 467 23.8
arahy.Tifrunner.gnm1.ann1.JCP29K Arachis hypogaea HOM05D002790 ORTHO05D003033 5.7e-15 86.3 467 23.1
Gorai.002G125300 Gossypium raimondii HOM05D002790 ORTHO05D003033 9.7e-15 85.5 460 22.6
Gohir.A01G113200 Gossypium hirsutum HOM05D002790 ORTHO05D003033 1.3e-14 85.1 460 22.6
CAN.G743.4 Capsicum annuum HOM05D002790 ORTHO05D003033 4.8e-14 83.2 209 31.1
MD08G1021200 Malus domestica HOM05D002790 ORTHO05D003033 1.1e-13 82.0 444 25.5
PGR031G2308 Punica granatum HOM05D002790 ORTHO05D003033 7.0e-13 79.3 437 25.6
FvH4_2g38980 Fragaria vesca HOM05D002790 ORTHO05D003033 1.2e-12 78.6 484 24.6
Lalb_Chr11g0062081 Lupinus albus HOM05D002790 ORTHO05D003033 1.2e-12 78.6 425 24.5
Nitab4.5_0000352g0100 Nicotiana tabacum HOM05D002790 ORTHO05D003033 1.2e-12 78.6 216 31.0
CSS0003108 Camellia sinensis var. sinensis HOM05D002790 ORTHO05D003033 1.6e-12 78.2 275 27.6
CiPaw.08G062300 Carya illinoinensis HOM05D002790 ORTHO05D003033 2.0e-12 77.8 215 34.0
Nitab4.5_0007395g0010 Nicotiana tabacum HOM05D002790 ORTHO05D003033 3.5e-12 77.0 193 32.1
FAN15G2556 Fragaria x ananassa HOM05D002790 ORTHO05D003033 1.0e-11 75.5 484 24.8
Hund26871 Selenicereus undatus HOM05D002790 ORTHO05D003033 1.0e-11 75.5 238 28.2
Dinv39481 Davidia involucrata HOM05D002790 ORTHO05D003033 2.2e-11 74.3 193 29.5
FAN20G0808 Fragaria x ananassa HOM05D002790 ORTHO05D003033 2.2e-11 74.3 475 24.6
TPR.G31200 Trifolium pratense HOM05D002790 ORTHO05D003033 2.2e-11 74.3 208 30.8
Glyma.04G027100 Glycine max HOM05D002790 ORTHO05D003033 6.5e-11 72.8 194 33.0
Aqoxy6G02414 Aquilegia oxysepala HOM05D002790 ORTHO05D003033 8.5e-11 72.4 194 34.5
SGA_v2.0_scaffold51G18791 Striga asiatica HOM05D002790 ORTHO05D003033 1.9e-10 71.2 263 29.7
TAR628G0961 Trochodendron aralioides HOM05D002790 ORTHO05D003033 7.2e-10 69.3 197 29.9
ClCG09G013610 Citrullus lanatus HOM05D002790 ORTHO05D003033 9.4e-10 68.9 185 33.0
MELO3C018687.2 Cucumis melo HOM05D002790 ORTHO05D003033 9.4e-10 68.9 168 35.1
Glyma.06G027100 Glycine max HOM05D002790 ORTHO05D003033 9.4e-10 68.9 189 30.7
CsaV3_7G006050 Cucumis sativus L. HOM05D002790 ORTHO05D003033 1.2e-09 68.6 200 33.0
Sed0020301 Sechium edule HOM05D002790 ORTHO05D003033 1.6e-09 68.2 205 33.7
Sc15g0007250 Simmondsia chinensis HOM05D002790 ORTHO05D003033 2.1e-09 67.8 457 24.1
EL10Ac1g00562 Beta vulgaris HOM05D002790 ORTHO05D003033 3.6e-09 67.0 245 26.5
MD15G1019100 Malus domestica HOM05D002790 ORTHO05D003033 4.7e-09 66.6 185 32.4
Nitab4.5_0000587g0090 Nicotiana tabacum HOM05D002790 ORTHO05D003033 4.7e-09 66.6 188 31.4
Peaxi162Scf00640g00214 Petunia axillaris HOM05D002790 ORTHO05D003033 6.1e-09 66.2 205 31.2
Solyc02g084620.3 Solanum lycopersicum HOM05D002790 ORTHO05D003033 6.1e-09 66.2 184 30.4
PSO210G6806 Papaver somniferum HOM05D002790 ORTHO05D003033 1.0e-08 65.5 170 33.5
FAN27G1378 Fragaria x ananassa HOM05D002790 ORTHO05D003033 1.8e-08 64.7 114 39.5
Nitab4.5_0002266g0110 Nicotiana tabacum HOM05D002790 ORTHO05D003033 1.8e-08 64.7 198 28.8
Sed0009107 Sechium edule HOM05D002790 ORTHO05D003033 2.3e-08 64.3 196 29.1
Nitab4.5_0004086g0030 Nicotiana tabacum HOM05D002790 ORTHO05D003033 3.0e-08 63.9 172 30.8
PSO210G2567 Papaver somniferum HOM05D002790 ORTHO05D003033 3.0e-08 63.9 198 31.3
Peaxi162Scf00083g01811 Petunia axillaris HOM05D002790 ORTHO05D003033 3.0e-08 63.9 170 31.8
Lj1g0014383 Lotus japonicus HOM05D002790 ORTHO05D003033 4.0e-08 63.5 171 32.2
Sopen02g029290 Solanum pennellii HOM05D002790 ORTHO05D003033 4.0e-08 63.5 184 30.4
CAN.G358.10 Capsicum annuum HOM05D002790 ORTHO05D003033 5.2e-08 63.2 171 31.6
Hund17214 Selenicereus undatus HOM05D002790 ORTHO05D003033 6.7e-08 62.8 245 25.3
Actinidia22497 Actinidia chinensis HOM05D002790 ORTHO05D003033 1.5e-07 61.6 272 25.4
VMungo1309G1755 Vigna mungo HOM05D002790 ORTHO05D003033 1.5e-07 61.6 186 31.2
RcHm_v2.0_Chr6g0302071 Rosa chinensis HOM05D002790 ORTHO05D003033 2.0e-07 61.2 110 38.2
Nn8g39421 Nelumbo nucifera HOM05D002790 ORTHO05D003033 3.3e-07 60.5 177 32.2
Psat5g013920 Pisum sativum HOM05D002790 ORTHO05D003033 3.3e-07 60.5 263 27.0
Dinv31807 Davidia involucrata HOM05D002790 ORTHO05D003033 1.3e-06 58.5 118 32.2
Phvul.009G014000 Phaseolus vulgaris HOM05D002790 ORTHO05D003033 1.3e-06 58.5 186 30.6
COL.COLO4_21978 Corchorus olitorius HOM05D002790 ORTHO05D003033 2.2e-06 57.8 131 32.1
Medtr3g113050 Medicago truncatula HOM05D002790 ORTHO05D003033 2.2e-06 57.8 188 28.2
CSS0020058 Camellia sinensis var. sinensis HOM05D002790 ORTHO05D003033 2.8e-06 57.4 136 31.6
Dinv33594 Davidia involucrata HOM05D002790 ORTHO05D003033 3.7e-06 57.0 211 27.5
vmacro22101 Vaccinium macrocarpon HOM05D002790 ORTHO05D003033 4.8e-06 56.6 268 26.9
SalBow8G5479 Salvia bowleyana HOM05D002790 ORTHO05D003033 6.3e-06 56.2 195 29.2


User provided reference genes

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