Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p33290 Brassica napus HOM05D005480 ORTHO05D006735 2.4e-47 191.8 95 100.0
C04p28170 Brassica napus HOM05D005480 ORTHO05D006735 4.7e-35 151.0 95 83.2
BolC4t24360H Brassica oleracea HOM05D005480 ORTHO05D006735 4.7e-35 151.0 95 83.2
BolC4t24894H Brassica oleracea HOM05D005480 ORTHO05D006735 4.8e-32 141.0 95 80.0
BcaC02g10502 Brassica carinata HOM05D005480 ORTHO05D006735 1.1e-31 139.8 89 82.0
Dinv26753 Davidia involucrata HOM05D005480 ORTHO05D006735 2.5e-12 75.5 109 45.9
Sp7g34650 Schrenkiella parvula HOM05D005480 ORTHO05D006735 2.5e-12 75.5 77 53.2
Thhalv10025060m.g Eutrema salsugineum HOM05D005480 ORTHO05D006735 3.2e-12 75.1 112 47.3
Cfa004218 Carpinus fangiana HOM05D005480 ORTHO05D006735 9.5e-12 73.6 109 45.0
Haze_15193 Corylus avellana HOM05D005480 ORTHO05D006735 9.5e-12 73.6 109 45.0
BcaNung03510 Brassica carinata HOM05D005480 ORTHO05D006735 1.2e-11 73.2 59 66.1
Lj7A18T44 Lonicera japonica HOM05D005480 ORTHO05D006735 1.6e-11 72.8 110 43.6
Lj7A20T61 Lonicera japonica HOM05D005480 ORTHO05D006735 1.6e-11 72.8 110 43.6
CANSAT01G1679 Cannabis sativa HOM05D005480 ORTHO05D006735 2.8e-11 72.0 106 47.2
CiPaw.01G026500 Carya illinoinensis HOM05D005480 ORTHO05D006735 2.8e-11 72.0 109 43.1
A01p01950 Brassica napus HOM05D005480 ORTHO05D006735 3.6e-11 71.6 59 64.4
BraA01t00184Z Brassica rapa HOM05D005480 ORTHO05D006735 3.6e-11 71.6 59 64.4
QL06p043724 Quercus lobata HOM05D005480 ORTHO05D006735 3.6e-11 71.6 111 45.0
C01p02120 Brassica napus HOM05D005480 ORTHO05D006735 4.7e-11 71.2 59 64.4
BolC1t00204H Brassica oleracea HOM05D005480 ORTHO05D006735 4.7e-11 71.2 59 64.4
Gohir.A12G068600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 4.7e-11 71.2 109 45.0
Carub.0007s0332 Capsella rubella HOM05D005480 ORTHO05D006735 6.1e-11 70.9 112 44.6
AL7G13910 Arabidopsis lyrata HOM05D005480 ORTHO05D006735 8.0e-11 70.5 112 44.6
AT4G37130 Arabidopsis thaliana HOM05D005480 ORTHO05D006735 8.0e-11 70.5 112 44.6
Ciclev10025487m.g Citrus clementina HOM05D005480 ORTHO05D006735 1.0e-10 70.1 112 43.8
Dinv39906 Davidia involucrata HOM05D005480 ORTHO05D006735 1.0e-10 70.1 112 44.6
Eucgr.H01972 Eucalyptus grandis HOM05D005480 ORTHO05D006735 1.0e-10 70.1 109 44.0
MD02G1161300 Malus domestica HOM05D005480 ORTHO05D006735 1.0e-10 70.1 109 44.0
Prupe.7G142300 Prunus persica HOM05D005480 ORTHO05D006735 1.4e-10 69.7 112 43.8
THA.LOC104819823 Tarenaya hassleriana HOM05D005480 ORTHO05D006735 1.4e-10 69.7 58 58.6
GSVIVG01005079001 Vitis vinifera HOM05D005480 ORTHO05D006735 1.8e-10 69.3 109 43.1
Actinidia12077 Actinidia chinensis HOM05D005480 ORTHO05D006735 2.3e-10 68.9 111 42.3
Aqoxy5G01417 Aquilegia oxysepala HOM05D005480 ORTHO05D006735 2.3e-10 68.9 109 45.0
Sc03g0001260 Simmondsia chinensis HOM05D005480 ORTHO05D006735 2.3e-10 68.9 109 42.2
DCAR_021432 Daucus carota HOM05D005480 ORTHO05D006735 3.0e-10 68.6 108 40.7
Lj2g0021055 Lotus japonicus HOM05D005480 ORTHO05D006735 3.0e-10 68.6 110 42.7
TAR625G1062 Trochodendron aralioides HOM05D005480 ORTHO05D006735 3.0e-10 68.6 106 41.5
MD15G1275400 Malus domestica HOM05D005480 ORTHO05D006735 4.0e-10 68.2 109 44.0
Phvul.002G022500 Phaseolus vulgaris HOM05D005480 ORTHO05D006735 4.0e-10 68.2 108 39.8
AUR62003828 Chenopodium quinoa HOM05D005480 ORTHO05D006735 5.2e-10 67.8 109 38.5
Ca_24802_v3 Cicer arietinum L. HOM05D005480 ORTHO05D006735 5.2e-10 67.8 103 40.8
Glyma.11G059700 Glycine max HOM05D005480 ORTHO05D006735 5.2e-10 67.8 111 43.2
Gorai.008G072400 Gossypium raimondii HOM05D005480 ORTHO05D006735 6.8e-10 67.4 109 41.3
Potri.007G036600 Populus trichocarpa HOM05D005480 ORTHO05D006735 6.8e-10 67.4 110 41.8
CSS0014684 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 8.8e-10 67.0 112 41.1
FvH4_1g14810 Fragaria vesca HOM05D005480 ORTHO05D006735 8.8e-10 67.0 112 40.2
FAN19G1500 Fragaria x ananassa HOM05D005480 ORTHO05D006735 8.8e-10 67.0 112 40.2
FAN23G2977 Fragaria x ananassa HOM05D005480 ORTHO05D006735 8.8e-10 67.0 112 40.2
vmacro05295 Vaccinium macrocarpon HOM05D005480 ORTHO05D006735 8.8e-10 67.0 109 43.1
FAN28G0426 Fragaria x ananassa HOM05D005480 ORTHO05D006735 1.2e-09 66.6 79 46.8
Glyma.01G181500 Glycine max HOM05D005480 ORTHO05D006735 1.2e-09 66.6 111 42.3
Lalb_Chr09g0322931 Lupinus albus HOM05D005480 ORTHO05D006735 1.2e-09 66.6 106 42.5
CARHR245380 Cardamine hirsuta HOM05D005480 ORTHO05D006735 1.5e-09 66.2 73 50.7
Cc07_g05560 Coffea canephora HOM05D005480 ORTHO05D006735 1.5e-09 66.2 107 42.1
COL.COLO4_11327 Corchorus olitorius HOM05D005480 ORTHO05D006735 1.5e-09 66.2 109 39.4
Migut.H00485 Erythranthe guttata HOM05D005480 ORTHO05D006735 1.5e-09 66.2 111 42.3
Psat2g164160 Pisum sativum HOM05D005480 ORTHO05D006735 1.5e-09 66.2 107 40.2
arahy.Tifrunner.gnm1.ann1.E9URZA Arachis hypogaea HOM05D005480 ORTHO05D006735 2.0e-09 65.9 108 41.7
arahy.Tifrunner.gnm1.ann1.HXIH5S Arachis hypogaea HOM05D005480 ORTHO05D006735 2.0e-09 65.9 108 41.7
CSS0005424 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 2.0e-09 65.9 109 40.4
Rhsim02G0168000 Rhododendron simsii HOM05D005480 ORTHO05D006735 2.0e-09 65.9 109 39.4
TAR381G0420 Trochodendron aralioides HOM05D005480 ORTHO05D006735 2.0e-09 65.9 109 39.4
FAN26G2127 Fragaria x ananassa HOM05D005480 ORTHO05D006735 2.6e-09 65.5 109 39.4
Medtr5g018390 Medicago truncatula HOM05D005480 ORTHO05D006735 2.6e-09 65.5 107 39.3
MELO3C007529.2 Cucumis melo HOM05D005480 ORTHO05D006735 3.4e-09 65.1 58 55.2
ECA232G3160 Erigeron canadensis HOM05D005480 ORTHO05D006735 3.4e-09 65.1 109 40.4
Gohir.D12G090600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 3.4e-09 65.1 109 39.4
Peaxi162Scf00993g00022 Petunia axillaris HOM05D005480 ORTHO05D006735 3.4e-09 65.1 110 43.6
Sed0026694 Sechium edule HOM05D005480 ORTHO05D006735 3.4e-09 65.1 112 41.1
Thecc.01G048100 Theobroma cacao HOM05D005480 ORTHO05D006735 3.4e-09 65.1 112 40.2
VMungo1215G2543 Vigna mungo HOM05D005480 ORTHO05D006735 3.4e-09 65.1 108 38.9
Nitab4.5_0000108g0300 Nicotiana tabacum HOM05D005480 ORTHO05D006735 4.4e-09 64.7 109 43.1
RcHm_v2.0_Chr2g0103771 Rosa chinensis HOM05D005480 ORTHO05D006735 4.4e-09 64.7 57 54.4
Nitab4.5_0001014g0070 Nicotiana tabacum HOM05D005480 ORTHO05D006735 5.7e-09 64.3 58 60.3
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 7.5e-09 63.9 79 45.6
CAN.G836.34 Capsicum annuum HOM05D005480 ORTHO05D006735 7.5e-09 63.9 112 42.9
AUR62001975 Chenopodium quinoa HOM05D005480 ORTHO05D006735 7.5e-09 63.9 58 53.4
CsaV3_6G042900 Cucumis sativus L. HOM05D005480 ORTHO05D006735 7.5e-09 63.9 109 40.4
Sabra07G0032600 Salix brachista HOM05D005480 ORTHO05D006735 7.5e-09 63.9 110 42.7
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 7.5e-09 63.9 109 42.2
ATR0733G143 Amborella trichopoda HOM05D005480 ORTHO05D006735 9.8e-09 63.5 60 53.3
Lalb_Chr05g0213141 Lupinus albus HOM05D005480 ORTHO05D006735 1.3e-08 63.2 58 53.4
MBI16_g19897_MAGBIO Magnolia biondii HOM05D005480 ORTHO05D006735 1.7e-08 62.8 109 37.6
PGR102G0042 Punica granatum HOM05D005480 ORTHO05D006735 1.7e-08 62.8 110 40.0
Hund13586 Selenicereus undatus HOM05D005480 ORTHO05D006735 1.7e-08 62.8 109 41.3
SGA_v2.0_scaffold135G34951 Striga asiatica HOM05D005480 ORTHO05D006735 1.7e-08 62.8 99 42.4
SGA_v2.0_scaffold15G07231 Striga asiatica HOM05D005480 ORTHO05D006735 1.7e-08 62.8 109 43.1
HanXRQChr04g0123741 Helianthus annuus HOM05D005480 ORTHO05D006735 2.2e-08 62.4 107 40.2
Nn6g32121 Nelumbo nucifera HOM05D005480 ORTHO05D006735 2.2e-08 62.4 109 39.4
MSTRG.23794 Avicennia marina HOM05D005480 ORTHO05D006735 2.8e-08 62.0 76 46.1
TPR.G11349 Trifolium pratense HOM05D005480 ORTHO05D006735 2.8e-08 62.0 109 39.4
Manes.13G130100 Manihot esculenta HOM05D005480 ORTHO05D006735 4.9e-08 61.2 112 40.2
Duzib187G0998 Durio zibethinus HOM05D005480 ORTHO05D006735 6.3e-08 60.8 109 40.4
Lsat_1_v5_gn_4_179460 Lactuca sativa HOM05D005480 ORTHO05D006735 6.3e-08 60.8 58 53.4
HPP92_016040 Vanilla planifolia HOM05D005480 ORTHO05D006735 6.3e-08 60.8 77 45.5
BcaC01g00434 Brassica carinata HOM05D005480 ORTHO05D006735 8.3e-08 60.5 55 60.0
C03p79710 Brassica napus HOM05D005480 ORTHO05D006735 8.3e-08 60.5 55 60.0
BolC3t20222H Brassica oleracea HOM05D005480 ORTHO05D006735 8.3e-08 60.5 55 60.0
Duzib147G0741 Durio zibethinus HOM05D005480 ORTHO05D006735 1.4e-07 59.7 75 45.3
unitig_899.g14972 Utricularia gibba HOM05D005480 ORTHO05D006735 1.4e-07 59.7 58 46.6
Aa31LG6G13860 Aethionema arabicum HOM05D005480 ORTHO05D006735 1.8e-07 59.3 79 46.8
A08p22500 Brassica napus HOM05D005480 ORTHO05D006735 1.8e-07 59.3 55 58.2
BraA08t34205Z Brassica rapa HOM05D005480 ORTHO05D006735 1.8e-07 59.3 55 58.2
PGSC0003DMG400010074 Solanum tuberosum HOM05D005480 ORTHO05D006735 1.8e-07 59.3 109 39.4
Oeu003952.2 Olea europaea HOM05D005480 ORTHO05D006735 2.4e-07 58.9 57 49.1
Os09g0453500 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 2.4e-07 58.9 102 34.3
PSO210G7251 Papaver somniferum HOM05D005480 ORTHO05D006735 2.4e-07 58.9 106 38.7
PSO170G5089 Papaver somniferum HOM05D005480 ORTHO05D006735 3.1e-07 58.5 108 39.8
Solyc02g090230.4 Solanum lycopersicum HOM05D005480 ORTHO05D006735 3.1e-07 58.5 109 40.4
Sopen02g034920 Solanum pennellii HOM05D005480 ORTHO05D006735 3.1e-07 58.5 109 40.4
BcaB03g12364 Brassica carinata HOM05D005480 ORTHO05D006735 5.4e-07 57.8 55 58.2
BcaB03g12366 Brassica carinata HOM05D005480 ORTHO05D006735 5.4e-07 57.8 55 58.2
Hma1.2p1_0546F.1_g176180 Hydrangea macrophylla HOM05D005480 ORTHO05D006735 5.4e-07 57.8 76 44.7
ClCG01G016580 Citrullus lanatus HOM05D005480 ORTHO05D006735 9.2e-07 57.0 108 38.9
SEGI_40098 Sequoiadendron giganteum HOM05D005480 ORTHO05D006735 1.2e-06 56.6 110 35.5
CDE02G2721 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 3.5e-06 55.1 57 50.9
CDE01G0732 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 4.5e-06 54.7 57 49.1


User provided reference genes

Program Settings