Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p24700 Brassica napus HOM05D002450 ORTHO05D002953 2.3e-79 298.9 160 100.0
BolC4t23976H Brassica oleracea HOM05D002450 ORTHO05D002953 2.3e-79 298.9 160 100.0
BcaC06g34680 Brassica carinata HOM05D002450 ORTHO05D002953 1.1e-65 253.4 163 87.1
C07p25690 Brassica napus HOM05D002450 ORTHO05D002953 1.1e-65 253.4 163 87.1
BolC7t43088H Brassica oleracea HOM05D002450 ORTHO05D002953 1.1e-65 253.4 163 87.1
BcaC02g10828 Brassica carinata HOM05D002450 ORTHO05D002953 2.5e-65 252.3 160 88.1
Sp2g07910 Schrenkiella parvula HOM05D002450 ORTHO05D002953 1.9e-60 236.1 163 82.2
Carub.0008s0559 Capsella rubella HOM05D002450 ORTHO05D002953 2.4e-60 235.7 163 81.0
Aa31LG9G13220 Aethionema arabicum HOM05D002450 ORTHO05D002953 9.2e-60 233.8 164 81.1
A02p27680 Brassica napus HOM05D002450 ORTHO05D002953 1.2e-59 233.4 163 81.0
BraA02t07807Z Brassica rapa HOM05D002450 ORTHO05D002953 1.2e-59 233.4 163 81.0
BcaC03g16563 Brassica carinata HOM05D002450 ORTHO05D002953 6.0e-59 231.1 163 80.4
C02p43760 Brassica napus HOM05D002450 ORTHO05D002953 6.0e-59 231.1 163 80.4
BolC2t10422H Brassica oleracea HOM05D002450 ORTHO05D002953 6.0e-59 231.1 163 80.4
A06p48030 Brassica napus HOM05D002450 ORTHO05D002953 3.1e-55 218.8 163 78.5
BraA06t27673Z Brassica rapa HOM05D002450 ORTHO05D002953 3.1e-55 218.8 163 78.5
BcaC06g31721 Brassica carinata HOM05D002450 ORTHO05D002953 5.2e-55 218.0 163 77.9
Thhalv10003149m.g Eutrema salsugineum HOM05D002450 ORTHO05D002953 3.0e-50 202.2 163 73.0
AL8G17530 Arabidopsis lyrata HOM05D002450 ORTHO05D002953 2.5e-49 199.1 163 72.4
BcaB07g30594 Brassica carinata HOM05D002450 ORTHO05D002953 3.6e-48 195.3 163 71.2
AT5G43130 Arabidopsis thaliana HOM05D002450 ORTHO05D002953 5.4e-44 181.4 122 83.6
CARHR180850 Cardamine hirsuta HOM05D002450 ORTHO05D002953 1.5e-41 173.3 163 66.9
TWI74G0610 Tripterygium wilfordii HOM05D002450 ORTHO05D002953 3.5e-35 152.1 172 58.7
Eucgr.C02521 Eucalyptus grandis HOM05D002450 ORTHO05D002953 5.1e-34 148.3 171 56.1
Eucgr.F02266 Eucalyptus grandis HOM05D002450 ORTHO05D002953 3.3e-33 145.6 170 55.9
TWI77G0253 Tripterygium wilfordii HOM05D002450 ORTHO05D002953 2.1e-32 142.9 175 56.6
Atru.chr13.809 Acer truncatum HOM05D002450 ORTHO05D002953 1.8e-31 139.8 177 57.1
Duzib041G0010 Durio zibethinus HOM05D002450 ORTHO05D002953 2.4e-31 139.4 176 54.5
GSVIVG01009365001 Vitis vinifera HOM05D002450 ORTHO05D002953 2.4e-31 139.4 177 53.7
Thecc.08G091300 Theobroma cacao HOM05D002450 ORTHO05D002953 4.0e-31 138.7 176 53.4
Manes.03G054700 Manihot esculenta HOM05D002450 ORTHO05D002953 5.3e-31 138.3 175 55.4
Sed0017090 Sechium edule HOM05D002450 ORTHO05D002953 5.3e-31 138.3 172 55.2
Duzib093G1995 Durio zibethinus HOM05D002450 ORTHO05D002953 9.0e-31 137.5 176 52.8
MELO3C003391.2 Cucumis melo HOM05D002450 ORTHO05D002953 1.2e-30 137.1 169 52.7
CsaV3_3G049350 Cucumis sativus L. HOM05D002450 ORTHO05D002953 1.2e-30 137.1 169 52.7
Manes.16G088600 Manihot esculenta HOM05D002450 ORTHO05D002953 1.5e-30 136.7 175 54.9
Aqoxy1G00817 Aquilegia oxysepala HOM05D002450 ORTHO05D002953 3.4e-30 135.6 176 56.2
Cc10_g05590 Coffea canephora HOM05D002450 ORTHO05D002953 3.4e-30 135.6 177 55.4
COL.COLO4_28529 Corchorus olitorius HOM05D002450 ORTHO05D002953 4.5e-30 135.2 177 53.1
TPR.G33705 Trifolium pratense HOM05D002450 ORTHO05D002953 7.6e-30 134.4 178 50.0
FAN18G3361 Fragaria x ananassa HOM05D002450 ORTHO05D002953 9.9e-30 134.0 180 53.9
FvH4_5g25820 Fragaria vesca HOM05D002450 ORTHO05D002953 2.2e-29 132.9 180 53.3
FAN08G0311 Fragaria x ananassa HOM05D002450 ORTHO05D002953 2.2e-29 132.9 180 52.8
Gohir.D05G265200 Gossypium hirsutum HOM05D002450 ORTHO05D002953 2.2e-29 132.9 180 52.2
Gorai.009G277000 Gossypium raimondii HOM05D002450 ORTHO05D002953 2.2e-29 132.9 180 52.2
Gohir.A05G263000 Gossypium hirsutum HOM05D002450 ORTHO05D002953 2.9e-29 132.5 180 52.2
Aqoxy2G03346 Aquilegia oxysepala HOM05D002450 ORTHO05D002953 3.8e-29 132.1 175 56.0
CANSAT54G1944 Cannabis sativa HOM05D002450 ORTHO05D002953 4.9e-29 131.7 179 52.5
Haze_26082 Corylus avellana HOM05D002450 ORTHO05D002953 6.4e-29 131.3 172 52.9
MD06G1005900 Malus domestica HOM05D002450 ORTHO05D002953 6.4e-29 131.3 178 52.8
PSO675G5640 Papaver somniferum HOM05D002450 ORTHO05D002953 6.4e-29 131.3 175 53.7
RcHm_v2.0_Chr7g0216291 Rosa chinensis HOM05D002450 ORTHO05D002953 6.4e-29 131.3 176 54.0
FAN13G2461 Fragaria x ananassa HOM05D002450 ORTHO05D002953 8.4e-29 131.0 180 52.2
Ca_15910_v3 Cicer arietinum L. HOM05D002450 ORTHO05D002953 1.1e-28 130.6 178 53.4
Prupe.5G007400 Prunus persica HOM05D002450 ORTHO05D002953 1.4e-28 130.2 177 52.0
Potri.002G119900 Populus trichocarpa HOM05D002450 ORTHO05D002953 1.9e-28 129.8 176 52.8
PSO541G0144 Papaver somniferum HOM05D002450 ORTHO05D002953 2.4e-28 129.4 175 53.1
VMungo0647G0877 Vigna mungo HOM05D002450 ORTHO05D002953 2.4e-28 129.4 176 50.6
Glyma.14G087700 Glycine max HOM05D002450 ORTHO05D002953 4.2e-28 128.6 176 48.9
Haze_25520 Corylus avellana HOM05D002450 ORTHO05D002953 7.1e-28 127.9 170 52.4
Glyma.06G045200 Glycine max HOM05D002450 ORTHO05D002953 7.1e-28 127.9 172 50.6
Psat5g038160 Pisum sativum HOM05D002450 ORTHO05D002953 7.1e-28 127.9 178 50.0
Potri.014G018000 Populus trichocarpa HOM05D002450 ORTHO05D002953 7.1e-28 127.9 177 53.1
Atru.chr9.2196 Acer truncatum HOM05D002450 ORTHO05D002953 9.3e-28 127.5 167 56.3
Dinv44973 Davidia involucrata HOM05D002450 ORTHO05D002953 9.3e-28 127.5 176 51.1
FAN04G2208 Fragaria x ananassa HOM05D002450 ORTHO05D002953 9.3e-28 127.5 180 51.7
Lalb_Chr14g0368301 Lupinus albus HOM05D002450 ORTHO05D002953 9.3e-28 127.5 173 50.3
Lalb_Chr24g0399411 Lupinus albus HOM05D002450 ORTHO05D002953 9.3e-28 127.5 175 49.7
TAR381G1265 Trochodendron aralioides HOM05D002450 ORTHO05D002953 9.3e-28 127.5 177 50.3
Actinidia10186 Actinidia chinensis HOM05D002450 ORTHO05D002953 1.6e-27 126.7 181 49.7
Cfa003416 Carpinus fangiana HOM05D002450 ORTHO05D002953 1.6e-27 126.7 171 52.0
Nn1g04614 Nelumbo nucifera HOM05D002450 ORTHO05D002953 1.6e-27 126.7 179 52.0
THA.LOC104812586 Tarenaya hassleriana HOM05D002450 ORTHO05D002953 1.6e-27 126.7 174 54.6
CAN.G1054.28 Capsicum annuum HOM05D002450 ORTHO05D002953 2.1e-27 126.3 178 51.1
Glyma.04G044700 Glycine max HOM05D002450 ORTHO05D002953 2.1e-27 126.3 175 49.7
Peaxi162Scf00081g01329 Petunia axillaris HOM05D002450 ORTHO05D002953 2.1e-27 126.3 177 49.7
Nitab4.5_0000934g0090 Nicotiana tabacum HOM05D002450 ORTHO05D002953 2.7e-27 125.9 177 51.4
Sopen04g031640 Solanum pennellii HOM05D002450 ORTHO05D002953 3.5e-27 125.6 177 50.3
Actinidia22682 Actinidia chinensis HOM05D002450 ORTHO05D002953 4.6e-27 125.2 181 50.3
Rhsim07G0221700 Rhododendron simsii HOM05D002450 ORTHO05D002953 4.6e-27 125.2 179 49.7
Nitab4.5_0003228g0010 Nicotiana tabacum HOM05D002450 ORTHO05D002953 6.0e-27 124.8 177 50.8
TPR.G2904 Trifolium pratense HOM05D002450 ORTHO05D002953 6.0e-27 124.8 177 50.8
Solyc04g078050.3 Solanum lycopersicum HOM05D002450 ORTHO05D002953 7.9e-27 124.4 177 49.7
CiPaw.07G177000 Carya illinoinensis HOM05D002450 ORTHO05D002953 1.0e-26 124.0 174 50.6
Phvul.001G026300 Phaseolus vulgaris HOM05D002450 ORTHO05D002953 1.3e-26 123.6 174 48.9
QL12p037610 Quercus lobata HOM05D002450 ORTHO05D002953 1.3e-26 123.6 175 50.3
TPR.G35644 Trifolium pratense HOM05D002450 ORTHO05D002953 2.3e-26 122.9 178 50.0
Nitab4.5_0000197g0100 Nicotiana tabacum HOM05D002450 ORTHO05D002953 6.7e-26 121.3 177 49.7
Prupe.6G138300 Prunus persica HOM05D002450 ORTHO05D002953 6.7e-26 121.3 177 49.7
Dinv39244 Davidia involucrata HOM05D002450 ORTHO05D002953 8.7e-26 120.9 179 50.3
vmacro22793 Vaccinium macrocarpon HOM05D002450 ORTHO05D002953 8.7e-26 120.9 178 49.4
ClCG09G012130 Citrullus lanatus HOM05D002450 ORTHO05D002953 1.1e-25 120.6 212 42.5
MBI14_g43560_MAGBIO Magnolia biondii HOM05D002450 ORTHO05D002953 1.5e-25 120.2 177 48.6
vmacro22069 Vaccinium macrocarpon HOM05D002450 ORTHO05D002953 1.5e-25 120.2 178 49.4
Gorai.002G132700 Gossypium raimondii HOM05D002450 ORTHO05D002953 2.5e-25 119.4 207 44.4
DCAR_008851 Daucus carota HOM05D002450 ORTHO05D002953 3.3e-25 119.0 176 47.7
DCAR_012809 Daucus carota HOM05D002450 ORTHO05D002953 3.3e-25 119.0 177 49.7
Migut.N02766 Erythranthe guttata HOM05D002450 ORTHO05D002953 1.3e-24 117.1 175 46.3
Glyma.17G236600 Glycine max HOM05D002450 ORTHO05D002953 1.6e-24 116.7 176 47.2
Lj5g0004805 Lotus japonicus HOM05D002450 ORTHO05D002953 2.1e-24 116.3 178 48.9
Lj4C69T6 Lonicera japonica HOM05D002450 ORTHO05D002953 2.8e-24 115.9 180 48.9
Sabra02G0094400 Salix brachista HOM05D002450 ORTHO05D002953 2.8e-24 115.9 174 47.7
CARHR027220 Cardamine hirsuta HOM05D002450 ORTHO05D002953 1.1e-23 114.0 160 50.6
CDE07G0359 Ceratophyllum demersum HOM05D002450 ORTHO05D002953 1.1e-23 114.0 163 50.9
Lj1g0026999 Lotus japonicus HOM05D002450 ORTHO05D002953 1.1e-23 114.0 178 47.8
Oeu057366.3 Olea europaea HOM05D002450 ORTHO05D002953 1.1e-23 114.0 175 49.1
Ah.02g112100 Amaranthus hybridus HOM05D002450 ORTHO05D002953 2.4e-23 112.8 180 45.0
MSTRG.24365 Avicennia marina HOM05D002450 ORTHO05D002953 2.4e-23 112.8 175 44.6
AUR62011845 Chenopodium quinoa HOM05D002450 ORTHO05D002953 5.3e-23 111.7 179 47.5
PGR031G3734 Punica granatum HOM05D002450 ORTHO05D002953 5.3e-23 111.7 178 45.5
Ciclev10000177m.g Citrus clementina HOM05D002450 ORTHO05D002953 1.2e-22 110.5 176 46.6
Nn5g30523 Nelumbo nucifera HOM05D002450 ORTHO05D002953 2.0e-22 109.8 179 49.2
PGR031G1138 Punica granatum HOM05D002450 ORTHO05D002953 2.6e-22 109.4 165 49.7
HanXRQChr06g0184031 Helianthus annuus HOM05D002450 ORTHO05D002953 5.8e-22 108.2 175 48.0
Carub.0001s2623 Capsella rubella HOM05D002450 ORTHO05D002953 7.6e-22 107.8 159 50.9
Ah.11g049460 Amaranthus hybridus HOM05D002450 ORTHO05D002953 2.9e-21 105.9 180 45.0
EL10Ac2g04298 Beta vulgaris HOM05D002450 ORTHO05D002953 3.8e-21 105.5 173 46.8
Sp1g23950 Schrenkiella parvula HOM05D002450 ORTHO05D002953 6.4e-21 104.8 169 47.3
arahy.Tifrunner.gnm1.ann1.94F500 Arachis hypogaea HOM05D002450 ORTHO05D002953 1.1e-20 104.0 176 45.5
MBI15_g06332_MAGBIO Magnolia biondii HOM05D002450 ORTHO05D010775 1.9e-20 103.2 136 49.3
Os02g0654400 Oryza sativa ssp. japonica HOM05D002450 ORTHO05D002953 2.5e-20 102.8 176 45.5
Rhsim06G0060700 Rhododendron simsii HOM05D002450 ORTHO05D002953 2.5e-20 102.8 173 46.2
Sabra14G0011900 Salix brachista HOM05D002450 ORTHO05D002953 3.2e-20 102.4 179 48.6
AUR62024687 Chenopodium quinoa HOM05D002450 ORTHO05D002953 4.2e-20 102.1 168 44.0
arahy.Tifrunner.gnm1.ann1.Z5BLZE Arachis hypogaea HOM05D002450 ORTHO05D002953 5.5e-20 101.7 176 44.9
Thecc.01G353600 Theobroma cacao HOM05D002450 ORTHO05D002953 2.7e-19 99.4 159 46.5
arahy.Tifrunner.gnm1.ann1.27GD0X Arachis hypogaea HOM05D002450 ORTHO05D002953 3.5e-19 99.0 176 43.8
ECA232G4701 Erigeron canadensis HOM05D002450 ORTHO05D002953 4.6e-19 98.6 175 46.3
SalBow1G6445 Salvia bowleyana HOM05D002450 ORTHO05D002953 4.6e-19 98.6 175 44.6
AL1G41250 Arabidopsis lyrata HOM05D002450 ORTHO05D002953 6.0e-19 98.2 160 45.0
SGA_v2.0_scaffold14G06941 Striga asiatica HOM05D002450 ORTHO05D002953 6.0e-19 98.2 174 42.0
CSS0001954 Camellia sinensis var. sinensis HOM05D002450 ORTHO05D002953 7.9e-19 97.8 144 49.3
Zm00001eb123340 Zea mays HOM05D002450 ORTHO05D002953 1.0e-18 97.4 176 45.5
Hund26558 Selenicereus undatus HOM05D002450 ORTHO05D002953 1.3e-18 97.1 124 50.8
EL10As5g23491 Beta vulgaris HOM05D002450 ORTHO05D002953 1.8e-18 96.7 159 44.0
CDE04G2133 Ceratophyllum demersum HOM05D002450 ORTHO05D002953 3.0e-18 95.9 187 42.2
TAR625G0542 Trochodendron aralioides HOM05D002450 ORTHO05D002953 3.9e-18 95.5 178 45.5
CSS0018605 Camellia sinensis var. sinensis HOM05D002450 ORTHO05D002953 6.7e-18 94.7 127 52.8
C07p17530 Brassica napus HOM05D002450 ORTHO05D002953 1.9e-17 93.2 159 47.8
BolC7t42261H Brassica oleracea HOM05D002450 ORTHO05D002953 1.9e-17 93.2 159 47.8
Cpa.g.sc123.17 Carica papaya HOM05D002450 ORTHO05D002953 2.5e-17 92.8 121 54.5
vmacro21449 Vaccinium macrocarpon HOM05D002450 ORTHO05D002953 2.5e-17 92.8 133 46.6
MBI15_g43330_MAGBIO Magnolia biondii HOM05D002450 ORTHO05D002953 4.3e-17 92.0 125 48.8
A07p11620 Brassica napus HOM05D002450 ORTHO05D002953 7.4e-17 91.3 159 47.8
BraA07t28949Z Brassica rapa HOM05D002450 ORTHO05D002953 7.4e-17 91.3 159 47.8
RcHm_v2.0_Chr1g0327781 Rosa chinensis HOM05D002450 ORTHO05D002953 7.4e-17 91.3 165 43.0
AT1G27720 Arabidopsis thaliana HOM05D002450 ORTHO05D002953 1.3e-16 90.5 159 45.3
Zm00001eb020720 Zea mays HOM05D002450 ORTHO05D002953 1.3e-16 90.5 178 41.6
Gohir.D01G108500 Gossypium hirsutum HOM05D002450 ORTHO05D002953 2.8e-16 89.4 137 49.6
HPP92_026568 Vanilla planifolia HOM05D002450 ORTHO05D002953 2.8e-16 89.4 182 42.3
Lj4A760T37 Lonicera japonica HOM05D002450 ORTHO05D002953 3.7e-16 89.0 180 41.7
Thhalv10009915m.g Eutrema salsugineum HOM05D002450 ORTHO05D002953 6.2e-16 88.2 161 44.1
PSO210G5040 Papaver somniferum HOM05D002450 ORTHO05D002953 6.2e-16 88.2 120 50.8
SEGI_26944 Sequoiadendron giganteum HOM05D002450 ORTHO05D002953 6.2e-16 88.2 121 50.4
MD03G1150900 Malus domestica HOM05D002450 ORTHO05D002953 1.1e-15 87.4 173 41.0
BcaB03g13972 Brassica carinata HOM05D002450 ORTHO05D002953 6.9e-15 84.7 156 46.8
HPP92_012495 Vanilla planifolia HOM05D002450 ORTHO05D002953 6.9e-15 84.7 164 43.9
Medtr3g102840 Medicago truncatula HOM05D002450 ORTHO05D002953 1.2e-14 84.0 145 46.9
SalBow7G3305 Salvia bowleyana HOM05D002450 ORTHO05D002953 3.4e-14 82.4 169 40.8
Os03g0441000 Oryza sativa ssp. japonica HOM05D002450 ORTHO05D002953 7.6e-14 81.3 172 38.4
Ca_25258_v3 Cicer arietinum L. HOM05D002450 ORTHO05D002953 1.3e-13 80.5 125 51.2
Lsat_1_v5_gn_4_130920 Lactuca sativa HOM05D002450 ORTHO05D002953 1.3e-13 80.5 169 42.6
ATR0665G484 Amborella trichopoda HOM05D002450 ORTHO05D002953 1.7e-13 80.1 178 39.9
BcaC06g35313 Brassica carinata HOM05D002450 ORTHO05D002953 5.5e-12 75.1 159 42.1
ECA232G4759 Erigeron canadensis HOM05D002450 ORTHO05D002953 7.9e-11 71.2 128 46.1
FAN03G0823 Fragaria x ananassa HOM05D002450 ORTHO05D002953 1.8e-10 70.1 150 38.7
FAN03G3007 Fragaria x ananassa HOM05D002450 ORTHO05D002953 1.8e-10 70.1 150 38.7
Pp3c4_10340 Physcomitrium patens HOM05D002450 ORTHO05D002953 1.8e-10 70.1 197 36.0
FAN01G1113 Fragaria x ananassa HOM05D002450 ORTHO05D002953 2.3e-10 69.7 116 44.0
FAN10G2618 Fragaria x ananassa HOM05D002450 ORTHO05D002953 3.0e-10 69.3 150 39.3
Aqoxy4G02607 Aquilegia oxysepala HOM05D002450 ORTHO05D002953 6.7e-10 68.2 131 39.7
Ca_22791_v3 Cicer arietinum L. HOM05D002450 ORTHO05D002953 8.7e-10 67.8 164 42.1
FvH4_7g02790 Fragaria vesca HOM05D002450 ORTHO05D002953 1.1e-09 67.4 147 38.8
FAN06G3777 Fragaria x ananassa HOM05D002450 ORTHO05D002953 1.1e-09 67.4 147 39.5
TAR383G0391 Trochodendron aralioides HOM05D002450 ORTHO05D002953 1.9e-09 66.6 164 35.4
HanXRQChr09g0266561 Helianthus annuus HOM05D002450 ORTHO05D002953 3.3e-09 65.9 174 36.8
CSS0010035 Camellia sinensis var. sinensis HOM05D002450 ORTHO05D002953 9.7e-09 64.3 77 53.2
Ca_26185_v3 Cicer arietinum L. HOM05D002450 ORTHO05D002953 3.7e-08 62.4 163 41.1
PSO210G7461 Papaver somniferum HOM05D002450 ORTHO05D002953 1.1e-07 60.8 161 36.0
Mapoly0015s0206 Marchantia polymorpha HOM05D002450 ORTHO05D002953 1.8e-07 60.1 199 31.7
PSO210G4345 Papaver somniferum HOM05D002450 ORTHO05D002953 2.4e-07 59.7 161 37.9
arahy.Tifrunner.gnm1.ann1.J3PJS8 Arachis hypogaea HOM05D002450 ORTHO05D002953 6.9e-07 58.2 92 43.5
arahy.Tifrunner.gnm1.ann1.7S3FNV Arachis hypogaea HOM05D002450 ORTHO05D002953 2.0e-06 56.6 110 40.9
Migut.C00497 Erythranthe guttata HOM05D002450 ORTHO05D002953 3.4e-06 55.8 170 36.5


User provided reference genes

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