Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p24690 Brassica napus HOM05D002450 ORTHO05D002953 1.1e-45 186.4 106 100.0
BolC4t23974H Brassica oleracea HOM05D002450 ORTHO05D002953 9.8e-26 120.2 71 100.0
BcaC06g34680 Brassica carinata HOM05D002450 ORTHO05D002953 1.3e-25 119.8 154 53.9
A06p48030 Brassica napus HOM05D002450 ORTHO05D002953 1.3e-25 119.8 154 51.3
C07p25690 Brassica napus HOM05D002450 ORTHO05D002953 1.3e-25 119.8 154 53.9
BolC7t43088H Brassica oleracea HOM05D002450 ORTHO05D002953 1.3e-25 119.8 154 53.9
BraA06t27673Z Brassica rapa HOM05D002450 ORTHO05D002953 6.0e-23 110.9 154 50.0
AT5G43130 Arabidopsis thaliana HOM05D002450 ORTHO05D002953 7.8e-23 110.5 154 47.4
Carub.0008s0559 Capsella rubella HOM05D002450 ORTHO05D002953 1.0e-22 110.2 154 46.8
BcaB07g30594 Brassica carinata HOM05D002450 ORTHO05D002953 1.3e-22 109.8 154 47.4
AL8G17530 Arabidopsis lyrata HOM05D002450 ORTHO05D002953 1.7e-22 109.4 154 46.8
A02p27680 Brassica napus HOM05D002450 ORTHO05D002953 2.3e-22 109.0 154 47.4
BcaC06g31721 Brassica carinata HOM05D002450 ORTHO05D002953 8.6e-22 107.1 154 51.9
BraA02t07807Z Brassica rapa HOM05D002450 ORTHO05D002953 8.6e-22 107.1 159 45.9
Thhalv10003149m.g Eutrema salsugineum HOM05D002450 ORTHO05D002953 1.9e-21 105.9 154 46.8
Sp2g07910 Schrenkiella parvula HOM05D002450 ORTHO05D002953 1.9e-21 105.9 154 47.4
BcaC03g16563 Brassica carinata HOM05D002450 ORTHO05D002953 4.7e-20 101.3 154 46.1
C02p43760 Brassica napus HOM05D002450 ORTHO05D002953 4.7e-20 101.3 154 46.1
BolC2t10422H Brassica oleracea HOM05D002450 ORTHO05D002953 4.7e-20 101.3 154 46.1
CARHR180850 Cardamine hirsuta HOM05D002450 ORTHO05D002953 3.4e-18 95.1 154 42.9
Atru.chr13.809 Acer truncatum HOM05D002450 ORTHO05D002953 4.9e-17 91.3 77 64.9
Aa31LG9G13220 Aethionema arabicum HOM05D002450 ORTHO05D002953 4.1e-16 88.2 155 42.6
MD06G1005900 Malus domestica HOM05D002450 ORTHO05D002953 7.1e-16 87.4 77 62.3
CANSAT54G1944 Cannabis sativa HOM05D002450 ORTHO05D002953 1.6e-15 86.3 77 59.7
Sp1g23950 Schrenkiella parvula HOM05D002450 ORTHO05D002953 1.6e-15 86.3 90 54.4
Atru.chr9.2196 Acer truncatum HOM05D002450 ORTHO05D002953 2.7e-15 85.5 78 62.8
Thecc.08G091300 Theobroma cacao HOM05D002450 ORTHO05D002953 2.7e-15 85.5 77 62.3
THA.LOC104812586 Tarenaya hassleriana HOM05D002450 ORTHO05D002953 6.0e-15 84.3 77 62.3
GSVIVG01009365001 Vitis vinifera HOM05D002450 ORTHO05D002953 1.0e-14 83.6 77 59.7
Potri.014G018000 Populus trichocarpa HOM05D002450 ORTHO05D002953 1.3e-14 83.2 75 64.0
Manes.03G054700 Manihot esculenta HOM05D002450 ORTHO05D002953 3.9e-14 81.6 77 59.7
QL12p037610 Quercus lobata HOM05D002450 ORTHO05D002953 6.6e-14 80.9 68 64.7
TWI74G0610 Tripterygium wilfordii HOM05D002450 ORTHO05D002953 6.6e-14 80.9 75 58.7
Sabra14G0011900 Salix brachista HOM05D002450 ORTHO05D002953 8.6e-14 80.5 76 61.8
Cpa.g.sc21.108 Carica papaya HOM05D002450 ORTHO05D002953 1.1e-13 80.1 81 56.8
Ciclev10000177m.g Citrus clementina HOM05D002450 ORTHO05D002953 1.1e-13 80.1 77 59.7
COL.COLO4_28529 Corchorus olitorius HOM05D002450 ORTHO05D002953 1.1e-13 80.1 77 61.0
Duzib093G1995 Durio zibethinus HOM05D002450 ORTHO05D002953 1.5e-13 79.7 77 58.4
TWI77G0253 Tripterygium wilfordii HOM05D002450 ORTHO05D002953 1.5e-13 79.7 75 60.0
Cpa.g.sc123.17 Carica papaya HOM05D002450 ORTHO05D002953 1.9e-13 79.3 77 58.4
Prupe.5G007400 Prunus persica HOM05D002450 ORTHO05D002953 2.5e-13 79.0 66 62.1
Gohir.A05G263000 Gossypium hirsutum HOM05D002450 ORTHO05D002953 3.3e-13 78.6 77 57.1
Gorai.009G277000 Gossypium raimondii HOM05D002450 ORTHO05D002953 3.3e-13 78.6 77 57.1
TAR381G1265 Trochodendron aralioides HOM05D002450 ORTHO05D002953 3.3e-13 78.6 66 62.1
Nitab4.5_0000934g0090 Nicotiana tabacum HOM05D002450 ORTHO05D002953 4.3e-13 78.2 79 57.0
RcHm_v2.0_Chr7g0216291 Rosa chinensis HOM05D002450 ORTHO05D002953 4.3e-13 78.2 77 58.4
Sabra02G0094400 Salix brachista HOM05D002450 ORTHO05D002953 4.3e-13 78.2 77 58.4
Potri.002G119900 Populus trichocarpa HOM05D002450 ORTHO05D002953 5.6e-13 77.8 77 58.4
Cfa003416 Carpinus fangiana HOM05D002450 ORTHO05D002953 9.5e-13 77.0 77 57.1
Dinv44973 Davidia involucrata HOM05D002450 ORTHO05D002953 9.5e-13 77.0 79 54.4
Peaxi162Scf00081g01329 Petunia axillaris HOM05D002450 ORTHO05D002953 9.5e-13 77.0 79 58.2
vmacro22069 Vaccinium macrocarpon HOM05D002450 ORTHO05D002953 9.5e-13 77.0 65 61.5
vmacro22793 Vaccinium macrocarpon HOM05D002450 ORTHO05D002953 9.5e-13 77.0 65 61.5
Eucgr.C02521 Eucalyptus grandis HOM05D002450 ORTHO05D002953 1.2e-12 76.6 73 60.3
Actinidia10186 Actinidia chinensis HOM05D002450 ORTHO05D002953 1.6e-12 76.3 65 60.0
CSS0033445 Camellia sinensis var. sinensis HOM05D002450 ORTHO05D002953 1.6e-12 76.3 59 66.1
Haze_25520 Corylus avellana HOM05D002450 ORTHO05D002953 1.6e-12 76.3 63 65.1
Gohir.A01G121000 Gossypium hirsutum HOM05D002450 ORTHO05D002953 1.6e-12 76.3 77 55.8
Nitab4.5_0003228g0010 Nicotiana tabacum HOM05D002450 ORTHO05D002953 1.6e-12 76.3 79 55.7
Dinv39244 Davidia involucrata HOM05D002450 ORTHO05D002953 2.1e-12 75.9 65 61.5
Manes.16G088600 Manihot esculenta HOM05D002450 ORTHO05D002953 2.8e-12 75.5 77 57.1
CSS0035270 Camellia sinensis var. sinensis HOM05D002450 ORTHO05D002953 3.6e-12 75.1 59 64.4
CSS0019848 Camellia sinensis var. sinensis HOM05D002450 ORTHO05D002953 4.7e-12 74.7 77 55.8
Solyc04g078050.3 Solanum lycopersicum HOM05D002450 ORTHO05D002953 4.7e-12 74.7 65 60.0
Sopen04g031640 Solanum pennellii HOM05D002450 ORTHO05D002953 4.7e-12 74.7 65 60.0
CAN.G1054.28 Capsicum annuum HOM05D002450 ORTHO05D002953 6.2e-12 74.3 73 57.5
Cc10_g05590 Coffea canephora HOM05D002450 ORTHO05D002953 6.2e-12 74.3 80 53.8
Gorai.002G132700 Gossypium raimondii HOM05D002450 ORTHO05D002953 8.1e-12 73.9 77 54.5
Prupe.6G138300 Prunus persica HOM05D002450 ORTHO05D002953 8.1e-12 73.9 77 54.5
Ca_25258_v3 Cicer arietinum L. HOM05D002450 ORTHO05D002953 1.1e-11 73.6 74 55.4
TPR.G33705 Trifolium pratense HOM05D002450 ORTHO05D002953 1.1e-11 73.6 73 54.8
Gohir.D01G108500 Gossypium hirsutum HOM05D002450 ORTHO05D002953 1.4e-11 73.2 66 60.6
Lj4C69T6 Lonicera japonica HOM05D002450 ORTHO05D002953 1.4e-11 73.2 66 62.1
Rhsim07G0221700 Rhododendron simsii HOM05D002450 ORTHO05D002953 1.4e-11 73.2 65 58.5
CiPaw.07G177000 Carya illinoinensis HOM05D002450 ORTHO05D002953 1.8e-11 72.8 71 57.7
Nn1g04614 Nelumbo nucifera HOM05D002450 ORTHO05D002953 1.8e-11 72.8 66 60.6
Ca_15910_v3 Cicer arietinum L. HOM05D002450 ORTHO05D002953 2.3e-11 72.4 73 54.8
Haze_26082 Corylus avellana HOM05D002450 ORTHO05D002953 2.3e-11 72.4 77 55.8
TAR625G0542 Trochodendron aralioides HOM05D002450 ORTHO05D002953 4.0e-11 71.6 74 55.4
Sed0009786 Sechium edule HOM05D002450 ORTHO05D002953 5.2e-11 71.2 73 54.8
BolC4t23975H Brassica oleracea HOM05D002450 ORTHO05D002953 6.8e-11 70.9 35 100.0
Glyma.04G044700 Glycine max HOM05D002450 ORTHO05D002953 6.8e-11 70.9 73 53.4
Actinidia22682 Actinidia chinensis HOM05D002450 ORTHO05D002953 8.9e-11 70.5 65 58.5
Nn5g30523 Nelumbo nucifera HOM05D002450 ORTHO05D002953 8.9e-11 70.5 65 60.0
Eucgr.F02266 Eucalyptus grandis HOM05D002450 ORTHO05D002953 1.2e-10 70.1 73 56.2
Oeu057366.3 Olea europaea HOM05D002450 ORTHO05D002953 1.2e-10 70.1 78 56.4
arahy.Tifrunner.gnm1.ann1.XWQ1KT Arachis hypogaea HOM05D002450 ORTHO05D002953 1.5e-10 69.7 69 58.0
MSTRG.24365 Avicennia marina HOM05D002450 ORTHO05D002953 1.5e-10 69.7 65 61.5
Glyma.06G045200 Glycine max HOM05D002450 ORTHO05D002953 1.5e-10 69.7 63 60.3
Lalb_Chr14g0368301 Lupinus albus HOM05D002450 ORTHO05D002953 1.5e-10 69.7 72 62.5
PGR031G3734 Punica granatum HOM05D002450 ORTHO05D002953 1.5e-10 69.7 69 59.4
FAN08G0311 Fragaria x ananassa HOM05D002450 ORTHO05D002953 2.0e-10 69.3 78 55.1
SalBow1G6445 Salvia bowleyana HOM05D002450 ORTHO05D002953 2.0e-10 69.3 78 57.7
Oeu034510.1 Olea europaea HOM05D002450 ORTHO05D002953 2.6e-10 68.9 65 56.9
Sed0017090 Sechium edule HOM05D002450 ORTHO05D002953 2.6e-10 68.9 65 58.5
FvH4_5g25820 Fragaria vesca HOM05D002450 ORTHO05D002953 3.4e-10 68.6 78 55.1
FAN18G3361 Fragaria x ananassa HOM05D002450 ORTHO05D002953 3.4e-10 68.6 78 55.1
HanXRQChr06g0184031 Helianthus annuus HOM05D002450 ORTHO05D002953 3.4e-10 68.6 74 60.8
arahy.Tifrunner.gnm1.ann1.27GD0X Arachis hypogaea HOM05D002450 ORTHO05D002953 4.4e-10 68.2 70 65.7
Duzib041G0010 Durio zibethinus HOM05D002450 ORTHO05D002953 4.4e-10 68.2 61 62.3
Migut.N02766 Erythranthe guttata HOM05D002450 ORTHO05D002953 4.4e-10 68.2 72 54.2
FAN13G2461 Fragaria x ananassa HOM05D002450 ORTHO05D002953 4.4e-10 68.2 78 55.1
Psat5g038160 Pisum sativum HOM05D002450 ORTHO05D002953 4.4e-10 68.2 73 53.4
ATR0665G484 Amborella trichopoda HOM05D002450 ORTHO05D002953 5.8e-10 67.8 73 52.1
arahy.Tifrunner.gnm1.ann1.94F500 Arachis hypogaea HOM05D002450 ORTHO05D002953 5.8e-10 67.8 70 65.7
Lalb_Chr24g0399411 Lupinus albus HOM05D002450 ORTHO05D002953 5.8e-10 67.8 72 63.9
FAN04G2208 Fragaria x ananassa HOM05D002450 ORTHO05D002953 7.6e-10 67.4 78 55.1
CsaV3_3G049350 Cucumis sativus L. HOM05D002450 ORTHO05D002953 9.9e-10 67.0 59 62.7
Aqoxy2G03346 Aquilegia oxysepala HOM05D002450 ORTHO05D002953 1.3e-09 66.6 76 48.7
ClCG09G012130 Citrullus lanatus HOM05D002450 ORTHO05D002953 1.3e-09 66.6 142 35.2
MELO3C003391.2 Cucumis melo HOM05D002450 ORTHO05D002953 1.3e-09 66.6 71 56.3
MBI14_g43560_MAGBIO Magnolia biondii HOM05D002450 ORTHO05D002953 1.3e-09 66.6 142 33.8
Sc05g0001410 Simmondsia chinensis HOM05D002450 ORTHO05D002953 1.3e-09 66.6 66 59.1
AL1G41250 Arabidopsis lyrata HOM05D002450 ORTHO05D002953 1.7e-09 66.2 60 56.7
arahy.Tifrunner.gnm1.ann1.Z5BLZE Arachis hypogaea HOM05D002450 ORTHO05D002953 1.7e-09 66.2 70 64.3
Glyma.14G087700 Glycine max HOM05D002450 ORTHO05D002953 1.7e-09 66.2 73 50.7
Nitab4.5_0000197g0100 Nicotiana tabacum HOM05D002450 ORTHO05D002953 1.7e-09 66.2 79 53.2
Lj4A760T37 Lonicera japonica HOM05D002450 ORTHO05D002953 2.2e-09 65.9 65 56.9
Aqoxy1G00817 Aquilegia oxysepala HOM05D002450 ORTHO05D002953 3.8e-09 65.1 76 48.7
Glyma.17G236600 Glycine max HOM05D002450 ORTHO05D002953 3.8e-09 65.1 73 49.3
Lj1g0026999 Lotus japonicus HOM05D002450 ORTHO05D002953 4.9e-09 64.7 57 66.7
PSO541G0144 Papaver somniferum HOM05D002450 ORTHO05D002953 6.4e-09 64.3 60 56.7
PSO675G5640 Papaver somniferum HOM05D002450 ORTHO05D002953 6.4e-09 64.3 60 56.7
AT1G27720 Arabidopsis thaliana HOM05D002450 ORTHO05D002953 8.4e-09 63.9 141 34.0
Lsat_1_v5_gn_4_130920 Lactuca sativa HOM05D002450 ORTHO05D002953 8.4e-09 63.9 64 59.4
Rhsim06G0060700 Rhododendron simsii HOM05D002450 ORTHO05D002953 8.4e-09 63.9 78 53.8
TPR.G35644 Trifolium pratense HOM05D002450 ORTHO05D002953 1.1e-08 63.5 73 54.8
CDE07G0359 Ceratophyllum demersum HOM05D002450 ORTHO05D002953 1.4e-08 63.2 67 52.2
EL10Ac2g04298 Beta vulgaris HOM05D002450 ORTHO05D002953 1.9e-08 62.8 65 52.3
Medtr3g102840 Medicago truncatula HOM05D002450 ORTHO05D002953 1.9e-08 62.8 62 56.5
ECA232G4701 Erigeron canadensis HOM05D002450 ORTHO05D002953 2.4e-08 62.4 76 52.6
Gohir.D05G265200 Gossypium hirsutum HOM05D002450 ORTHO05D002953 2.4e-08 62.4 54 63.0
MBI15_g43330_MAGBIO Magnolia biondii HOM05D002450 ORTHO05D002953 2.4e-08 62.4 79 54.4
DCAR_012809 Daucus carota HOM05D002450 ORTHO05D002953 3.2e-08 62.0 65 55.4
Phvul.001G026300 Phaseolus vulgaris HOM05D002450 ORTHO05D002953 4.1e-08 61.6 77 48.1
CDE04G2133 Ceratophyllum demersum HOM05D002450 ORTHO05D002953 5.4e-08 61.2 63 52.4
SEGI_26944 Sequoiadendron giganteum HOM05D002450 ORTHO05D002953 5.4e-08 61.2 69 47.8
HanXRQChr09g0266561 Helianthus annuus HOM05D002450 ORTHO05D002953 7.1e-08 60.8 69 55.1
Ah.02g112100 Amaranthus hybridus HOM05D002450 ORTHO05D002953 9.2e-08 60.5 72 50.0
AUR62024687 Chenopodium quinoa HOM05D002450 ORTHO05D002953 9.2e-08 60.5 65 49.2
Lj5g0004805 Lotus japonicus HOM05D002450 ORTHO05D002953 9.2e-08 60.5 72 59.7
HPP92_026568 Vanilla planifolia HOM05D002450 ORTHO05D002953 9.2e-08 60.5 73 49.3
Ah.11g049460 Amaranthus hybridus HOM05D002450 ORTHO05D002953 1.6e-07 59.7 65 52.3
VMungo0647G0877 Vigna mungo HOM05D002450 ORTHO05D002953 1.6e-07 59.7 77 54.5
Ah.07g199510 Amaranthus hybridus HOM05D002450 ORTHO05D002953 3.5e-07 58.5 72 48.6
CARHR027220 Cardamine hirsuta HOM05D002450 ORTHO05D002953 3.5e-07 58.5 83 45.8
Sc24g0003290 Simmondsia chinensis HOM05D002450 ORTHO05D002953 3.5e-07 58.5 65 53.8
Carub.0001s2623 Capsella rubella HOM05D002450 ORTHO05D002953 4.6e-07 58.2 72 44.4
AUR62011845 Chenopodium quinoa HOM05D002450 ORTHO05D002953 6.0e-07 57.8 65 47.7
Hund26558 Selenicereus undatus HOM05D002450 ORTHO05D002953 7.8e-07 57.4 75 48.0
Thecc.01G353600 Theobroma cacao HOM05D002450 ORTHO05D002953 1.3e-06 56.6 55 58.2
HPP92_012495 Vanilla planifolia HOM05D002450 ORTHO05D002953 1.3e-06 56.6 57 52.6
SHI19397 Sapria himalayana HOM05D002450 ORTHO05D002953 2.3e-06 55.8 88 45.5
ECA232G4759 Erigeron canadensis HOM05D002450 ORTHO05D002953 3.0e-06 55.5 71 50.7
HanXRQChr17g0568081 Helianthus annuus HOM05D002450 ORTHO05D002953 3.0e-06 55.5 80 50.0
DCAR_008851 Daucus carota HOM05D002450 ORTHO05D002953 3.9e-06 55.1 81 48.1
Zm00001eb020720 Zea mays HOM05D002450 ORTHO05D002953 3.9e-06 55.1 62 59.7
AagrBONN_evm.TU.Sc2ySwM_228.2387 Anthoceros agrestis HOM05D002450 ORTHO05D002953 5.1e-06 54.7 78 50.0
HanXRQChr17g0568561 Helianthus annuus HOM05D002450 ORTHO05D002953 6.6e-06 54.3 74 52.7


User provided reference genes

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