Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p17540 Brassica napus HOM05D004147 ORTHO05D005606 1.6e-158 562.8 291 100.0
BolC4t23301H Brassica oleracea HOM05D004147 ORTHO05D005606 1.6e-158 562.8 291 100.0
BraA05t20280Z Brassica rapa HOM05D004147 ORTHO05D005606 8.9e-154 547.0 292 97.6
A05p13420 Brassica napus HOM05D004147 ORTHO05D005606 1.4e-151 539.7 292 97.3
Sp4g14490 Schrenkiella parvula HOM05D004147 ORTHO05D005606 1.6e-150 536.2 291 95.9
CARHR125880 Cardamine hirsuta HOM05D004147 ORTHO05D005606 1.2e-147 526.6 294 90.1
Thhalv10017021m.g Eutrema salsugineum HOM05D004147 ORTHO05D005606 2.4e-146 522.3 294 93.5
Carub.0004s1343 Capsella rubella HOM05D004147 ORTHO05D005606 4.2e-143 511.5 274 92.3
AT2G32080 Arabidopsis thaliana HOM05D004147 ORTHO05D005606 3.9e-141 505.0 274 92.3
Aa31LG5G4940 Aethionema arabicum HOM05D004147 ORTHO05D005606 1.5e-140 503.1 321 84.4
AL103U10050 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 5.8e-137 491.1 274 90.9
AL4G27460 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 5.8e-137 491.1 274 90.9
Ciclev10016090m.g Citrus clementina HOM05D004147 ORTHO05D005606 4.3e-132 474.9 274 85.8
Thecc.09G206400 Theobroma cacao HOM05D004147 ORTHO05D005606 4.3e-132 474.9 274 85.4
COL.COLO4_35060 Corchorus olitorius HOM05D004147 ORTHO05D005606 1.3e-131 473.4 274 85.0
Duzib150G1508 Durio zibethinus HOM05D004147 ORTHO05D005606 1.6e-131 473.0 299 83.9
Glyma.20G025100 Glycine max HOM05D004147 ORTHO05D005606 8.1e-131 470.7 291 84.5
Lj4g0017588 Lotus japonicus HOM05D004147 ORTHO05D005606 1.1e-130 470.3 292 85.3
TPR.G34051 Trifolium pratense HOM05D004147 ORTHO05D005606 1.1e-130 470.3 291 85.2
Atru.chr3.2044 Acer truncatum HOM05D004147 ORTHO05D005606 1.4e-130 469.9 276 84.8
Glyma.07G225200 Glycine max HOM05D004147 ORTHO05D005606 3.1e-130 468.8 291 82.1
VMungo0251G0902 Vigna mungo HOM05D004147 ORTHO05D005606 3.1e-130 468.8 291 83.5
FvH4_3g46070 Fragaria vesca HOM05D004147 ORTHO05D005606 4.0e-130 468.4 292 84.2
Gohir.D03G147100 Gossypium hirsutum HOM05D004147 ORTHO05D005606 4.0e-130 468.4 297 82.8
Phvul.002G101600 Phaseolus vulgaris HOM05D004147 ORTHO05D005606 4.0e-130 468.4 291 83.5
Gohir.A03G021600 Gossypium hirsutum HOM05D004147 ORTHO05D005606 1.5e-129 466.5 297 82.5
Lalb_Chr16g0385471 Lupinus albus HOM05D004147 ORTHO05D005606 2.0e-129 466.1 294 85.0
CiPaw.13G180000 Carya illinoinensis HOM05D004147 ORTHO05D005606 3.4e-129 465.3 291 80.1
Ca_18795_v3 Cicer arietinum L. HOM05D004147 ORTHO05D005606 4.5e-129 464.9 297 83.2
Gohir.A05G000500 Gossypium hirsutum HOM05D004147 ORTHO05D005606 4.5e-129 464.9 291 80.8
Gohir.D05G000800 Gossypium hirsutum HOM05D004147 ORTHO05D005606 4.5e-129 464.9 291 80.1
QL01p007763 Quercus lobata HOM05D004147 ORTHO05D005606 9.9e-129 463.8 273 83.5
Gorai.003G154600 Gossypium raimondii HOM05D004147 ORTHO05D005606 3.8e-128 461.8 300 81.7
Medtr4g083230 Medicago truncatula HOM05D004147 ORTHO05D005606 3.8e-128 461.8 297 83.8
CANSAT35G0441 Cannabis sativa HOM05D004147 ORTHO05D005606 8.4e-128 460.7 274 81.4
Lalb_Chr09g0328961 Lupinus albus HOM05D004147 ORTHO05D005606 8.4e-128 460.7 274 83.9
Dinv06248 Davidia involucrata HOM05D004147 ORTHO05D005606 1.4e-127 459.9 291 79.7
Dinv15522 Davidia involucrata HOM05D004147 ORTHO05D005606 1.4e-127 459.9 291 79.7
MD03G1000100 Malus domestica HOM05D004147 ORTHO05D005606 1.9e-127 459.5 274 82.8
Cpa.g.sc119.7 Carica papaya HOM05D004147 ORTHO05D005606 2.5e-127 459.1 274 82.8
PGR102G2115 Punica granatum HOM05D004147 ORTHO05D005606 3.2e-127 458.8 291 77.7
arahy.Tifrunner.gnm1.ann1.41N8FB Arachis hypogaea HOM05D004147 ORTHO05D005606 7.1e-127 457.6 274 81.4
arahy.Tifrunner.gnm1.ann1.JJ8YPF Arachis hypogaea HOM05D004147 ORTHO05D005606 7.1e-127 457.6 274 81.4
Dinv09765 Davidia involucrata HOM05D004147 ORTHO05D005606 1.2e-126 456.8 291 82.8
TAR623G0988 Trochodendron aralioides HOM05D004147 ORTHO05D005606 2.1e-126 456.1 291 78.4
Migut.N00528 Erythranthe guttata HOM05D004147 ORTHO05D005606 7.9e-126 454.1 293 79.9
FAN11G3393 Fragaria x ananassa HOM05D004147 ORTHO05D005606 7.9e-126 454.1 318 77.4
MD11G1000500 Malus domestica HOM05D004147 ORTHO05D005606 7.9e-126 454.1 274 82.5
Prupe.6G000600 Prunus persica HOM05D004147 ORTHO05D005606 1.8e-125 453.0 275 82.2
CsaV3_1G041490 Cucumis sativus L. HOM05D004147 ORTHO05D005606 5.1e-125 451.4 274 80.7
Sc09g0002150 Simmondsia chinensis HOM05D004147 ORTHO05D005606 5.1e-125 451.4 292 77.7
Duzib170G0806 Durio zibethinus HOM05D004147 ORTHO05D005606 6.7e-125 451.1 273 82.8
Oeu023957.1 Olea europaea HOM05D004147 ORTHO05D005606 6.7e-125 451.1 291 79.4
Potri.001G000700 Populus trichocarpa HOM05D004147 ORTHO05D005606 8.7e-125 450.7 298 79.9
MELO3C015560.2 Cucumis melo HOM05D004147 ORTHO05D005606 1.1e-124 450.3 274 80.3
Potri.003G224000 Populus trichocarpa HOM05D004147 ORTHO05D005606 1.1e-124 450.3 276 81.2
TWI60G0666 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 2.5e-124 449.1 291 77.7
TWI32G0854 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 3.3e-124 448.7 291 80.8
FAN16G1044 Fragaria x ananassa HOM05D004147 ORTHO05D005606 7.4e-124 447.6 323 75.2
Nn2g15911 Nelumbo nucifera HOM05D004147 ORTHO05D005606 7.4e-124 447.6 291 77.7
TAR633G2501 Trochodendron aralioides HOM05D004147 ORTHO05D005606 7.4e-124 447.6 291 76.6
MSTRG.5958 Avicennia marina HOM05D004147 ORTHO05D005606 1.3e-123 446.8 290 77.6
CSS0011494 Camellia sinensis var. sinensis HOM05D004147 ORTHO05D005606 2.1e-123 446.0 294 80.6
MBI19_g24069_MAGBIO Magnolia biondii HOM05D004147 ORTHO05D005606 4.8e-123 444.9 269 81.8
TWI34G0273 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 6.2e-123 444.5 291 77.3
Hund19733 Selenicereus undatus HOM05D004147 ORTHO05D005606 1.4e-122 443.4 275 79.3
Aqoxy2G00002 Aquilegia oxysepala HOM05D004147 ORTHO05D005606 1.2e-121 440.3 290 76.6
DCAR_001959 Daucus carota HOM05D004147 ORTHO05D005606 2.6e-121 439.1 291 77.0
RcHm_v2.0_Chr5g0084131 Rosa chinensis HOM05D004147 ORTHO05D005606 3.4e-121 438.7 298 79.2
MSTRG.19397 Avicennia marina HOM05D004147 ORTHO05D005606 4.5e-121 438.3 291 74.9
AUR62040894 Chenopodium quinoa HOM05D004147 ORTHO05D005606 7.6e-121 437.6 275 77.8
PSO339G2679 Papaver somniferum HOM05D004147 ORTHO05D005606 1.0e-120 437.2 288 75.0
EL10Ac4g10393 Beta vulgaris HOM05D004147 ORTHO05D005606 1.3e-120 436.8 292 73.6
Eucgr.J01722 Eucalyptus grandis HOM05D004147 ORTHO05D005606 2.2e-120 436.0 299 77.3
FAN21G1018 Fragaria x ananassa HOM05D004147 ORTHO05D005606 4.9e-120 434.9 297 78.8
PSO384G4999 Papaver somniferum HOM05D004147 ORTHO05D005606 6.5e-120 434.5 288 74.3
Sed0000702 Sechium edule HOM05D004147 ORTHO05D005606 8.4e-120 434.1 274 75.9
Sopen01g025520 Solanum pennellii HOM05D004147 ORTHO05D005606 1.9e-119 433.0 291 77.7
Hma1.2p1_0589F.1_g184660 Hydrangea macrophylla HOM05D004147 ORTHO05D005606 2.5e-119 432.6 309 71.5
Cc01_g00350 Coffea canephora HOM05D004147 ORTHO05D005606 4.2e-119 431.8 291 75.6
CAN.G1941.2 Capsicum annuum HOM05D004147 ORTHO05D005606 2.1e-118 429.5 291 74.9
ClCG03G014680 Citrullus lanatus HOM05D004147 ORTHO05D005606 2.7e-118 429.1 274 78.1
Sc16g0009630 Simmondsia chinensis HOM05D004147 ORTHO05D005606 2.7e-118 429.1 292 73.3
Rhsim13G0235300 Rhododendron simsii HOM05D004147 ORTHO05D005606 3.5e-118 428.7 334 67.1
PSO541G5718 Papaver somniferum HOM05D004147 ORTHO05D005606 1.8e-117 426.4 278 77.0
PSO675G6472 Papaver somniferum HOM05D004147 ORTHO05D005606 1.8e-117 426.4 278 77.3
SGA_v2.0_scaffold6G03333 Striga asiatica HOM05D000201 ORTHO05D005606 2.3e-117 426.0 327 70.6
ECA238G2098 Erigeron canadensis HOM05D004147 ORTHO05D005606 3.9e-117 425.2 282 75.2
HanXRQChr14g0437101 Helianthus annuus HOM05D004147 ORTHO05D005606 8.7e-117 424.1 282 77.3
HPP92_018009 Vanilla planifolia HOM05D004147 ORTHO05D005606 2.5e-116 422.5 293 72.4
Ah.04g161370 Amaranthus hybridus HOM05D004147 ORTHO05D005606 3.3e-116 422.2 300 72.7
SGA_v2.0_scaffold3G01703 Striga asiatica HOM05D004147 ORTHO05D005606 4.3e-116 421.8 290 76.6
Peaxi162Scf01181g00019 Petunia axillaris HOM05D004147 ORTHO05D005606 4.8e-115 418.3 328 71.3
Haze_22914 Corylus avellana HOM05D004147 ORTHO05D005606 2.4e-114 416.0 298 73.5
Sabra01G0000600 Salix brachista HOM05D004147 ORTHO05D005606 2.4e-114 416.0 334 70.1
ATR0068G003 Amborella trichopoda HOM05D004147 ORTHO05D005606 7.7e-113 411.0 291 69.8
BcaB02g10449 Brassica carinata HOM05D004147 ORTHO05D005606 1.7e-112 409.8 228 94.7
AUR62042623 Chenopodium quinoa HOM05D004147 ORTHO05D005606 3.8e-112 408.7 308 68.2
Os01g0260700 Oryza sativa ssp. japonica HOM05D004147 ORTHO05D005606 1.1e-111 407.1 277 72.9
vmacro04279 Vaccinium macrocarpon HOM05D004147 ORTHO05D005606 2.5e-111 406.0 314 69.7
Zm00001eb127970 Zea mays HOM05D004147 ORTHO05D005606 2.5e-111 406.0 277 72.6
GSVIVG01025513001 Vitis vinifera HOM05D004147 ORTHO05D005606 3.2e-111 405.6 291 72.5
Zm00001eb333400 Zea mays HOM05D004147 ORTHO05D005606 3.2e-111 405.6 277 72.9
CDE09G0171 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 5.5e-111 404.8 265 71.7
CDE04G0726 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 6.1e-110 401.4 291 68.4
Actinidia16222 Actinidia chinensis HOM05D000201 ORTHO05D001601 6.7e-109 397.9 262 76.7
SalBow3G0983 Salvia bowleyana HOM05D004147 ORTHO05D005606 2.4e-106 389.4 298 73.2
Psat7g134480 Pisum sativum HOM05D004147 ORTHO05D005606 4.2e-103 378.6 250 82.8
Manes.15G111500 Manihot esculenta HOM05D004147 ORTHO05D005606 3.0e-101 372.5 234 80.8
CDE02G2463 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 5.7e-100 368.2 265 66.8
Sed0015400 Sechium edule HOM05D004147 ORTHO05D005606 1.2e-97 360.5 225 80.0
unitig_62.g23531 Utricularia gibba HOM05D004147 ORTHO05D005606 1.9e-95 353.2 256 69.9
Lsat_1_v5_gn_2_50601 Lactuca sativa HOM05D004147 ORTHO05D005606 2.7e-94 349.4 291 66.7
AagrBONN_evm.TU.Sc2ySwM_368.1732 Anthoceros agrestis HOM05D004147 ORTHO05D005606 3.7e-91 339.0 282 62.8
Pp3c17_4780 Physcomitrium patens HOM05D004147 ORTHO05D005606 8.2e-91 337.8 286 62.9
CAN.G281.7 Capsicum annuum HOM05D004147 ORTHO05D005606 1.8e-90 336.7 274 65.0
Pp3c14_13490 Physcomitrium patens HOM05D004147 ORTHO05D005606 9.1e-90 334.3 279 62.4
Nitab4.5_0000890g0080 Nicotiana tabacum HOM05D004147 ORTHO05D005606 1.6e-89 333.6 293 64.8
Nitab4.5_0000075g0060 Nicotiana tabacum HOM05D004147 ORTHO05D005606 2.0e-89 333.2 294 65.0
TAR623G0822 Trochodendron aralioides HOM05D004147 ORTHO05D005606 4.5e-89 332.0 206 79.6
CBR_g3650 Chara braunii HOM05D004147 ORTHO05D005606 1.6e-86 323.6 295 59.7
SEGI_18063 Sequoiadendron giganteum HOM05D004147 ORTHO05D005606 4.0e-85 318.9 269 62.5
CDE08G0894 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.2e-84 317.4 245 65.7
CDE02G0470 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 3.1e-82 309.3 247 64.0
Nn7g35773 Nelumbo nucifera HOM05D004147 ORTHO05D005606 8.8e-77 291.2 187 78.6
Sabra03G0166400 Salix brachista HOM05D004147 ORTHO05D005606 7.5e-76 288.1 182 78.6
CDE08G0994 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.3e-75 287.3 203 67.0
SMO164G0008 Selaginella moellendorffii HOM05D004147 ORTHO05D005606 1.4e-74 283.9 255 57.6
Actinidia00922 Actinidia chinensis HOM05D004147 ORTHO05D005606 1.8e-74 283.5 191 73.8
Solyc01g049680.3 Solanum lycopersicum HOM05D004147 ORTHO05D005606 1.5e-68 263.8 182 73.1
Lj1A564T30 Lonicera japonica HOM05D004147 ORTHO05D005606 1.3e-64 250.8 246 58.1
unitig_52.g17528 Utricularia gibba HOM05D004147 ORTHO05D005606 4.3e-63 245.7 191 66.0
Gorai.009G000700 Gossypium raimondii HOM05D004147 ORTHO05D005606 1.9e-58 230.3 148 76.4
Gorai.009G000600 Gossypium raimondii HOM05D004147 ORTHO05D005606 2.6e-44 183.3 113 80.5
HPP92_026678 Vanilla planifolia HOM05D004147 ORTHO05D005606 3.4e-44 183.0 121 74.4
Sabra01G0000400 Salix brachista HOM05D004147 ORTHO05D005606 1.7e-43 180.6 116 75.9
Solyc01g049690.4 Solanum lycopersicum HOM05D004147 ORTHO05D005606 5.4e-42 175.6 113 80.5
C08p28370 Brassica napus HOM05D004147 ORTHO05D021856 1.5e-39 167.5 119 75.6
BolC8t50447H Brassica oleracea HOM05D004147 ORTHO05D021856 1.5e-39 167.5 119 75.6
BolC2t11193H Brassica oleracea HOM05D004147 ORTHO05D005606 9.6e-39 164.9 119 75.6
Lj1A564T31 Lonicera japonica HOM05D004147 ORTHO05D005606 1.2e-38 164.5 140 70.0
BcaC03g17178 Brassica carinata HOM05D004147 ORTHO05D021856 1.6e-38 164.1 106 82.1
Potri.013G061100 Populus trichocarpa HOM05D004147 ORTHO05D005606 1.6e-38 164.1 266 38.3
BolC5t32093H Brassica oleracea HOM05D004147 ORTHO05D021856 4.7e-38 162.5 119 74.8
A03p64870 Brassica napus HOM05D004147 ORTHO05D005606 4.0e-37 159.5 119 73.1
BraA03t15549Z Brassica rapa HOM05D004147 ORTHO05D018802 4.0e-37 159.5 119 73.1
CAN.G678.10 Capsicum annuum HOM05D004147 ORTHO05D005606 4.0e-37 159.5 104 75.0
C05p33620 Brassica napus HOM05D004147 ORTHO05D021856 5.2e-37 159.1 119 73.9
CAN.G640.3 Capsicum annuum HOM05D004147 ORTHO05D005606 5.2e-37 159.1 112 69.6
C02p30750 Brassica napus HOM05D004147 ORTHO05D021856 1.3e-35 154.5 119 72.3
PRCOL_00001079 Prasinoderma coloniale HOM05D004147 ORTHO05D005606 6.4e-35 152.1 272 34.9
MBI05_g14947_MAGBIO Magnolia biondii HOM05D000130 ORTHO05D002599 1.9e-34 150.6 101 70.3
FAN25G3109 Fragaria x ananassa HOM05D004147 ORTHO05D005606 3.2e-34 149.8 95 88.4
unitig_52.g17527 Utricularia gibba HOM05D004147 ORTHO05D005606 3.0e-32 143.3 95 74.7
BcaC07g39671 Brassica carinata HOM05D004147 ORTHO05D005606 1.1e-31 141.4 87 82.8
BraA05t19995Z Brassica rapa HOM05D004147 ORTHO05D018802 1.5e-31 141.0 155 50.3
BcaC07g38232 Brassica carinata HOM05D004147 ORTHO05D005606 9.6e-31 138.3 155 51.0
BraA09t36212Z Brassica rapa HOM05D004147 ORTHO05D018802 1.8e-29 134.0 84 82.1
Cre06.g278208 Chlamydomonas reinhardtii HOM05D004147 ORTHO05D005606 1.2e-28 131.3 248 33.9
Sabra01G0000300 Salix brachista HOM05D004147 ORTHO05D005606 2.6e-28 130.2 104 76.9
TWI32G1322 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 4.9e-27 125.9 259 33.2
Oeu023697.1 Olea europaea HOM05D004147 ORTHO05D005606 2.4e-26 123.6 65 87.7
Lsat_1_v5_gn_4_94280 Lactuca sativa HOM05D004147 ORTHO05D005606 1.7e-24 117.5 236 37.3
TAR623G1050 Trochodendron aralioides HOM05D004147 ORTHO05D005606 1.8e-16 90.9 62 77.4
Lsat_1_v5_gn_8_97821 Lactuca sativa HOM05D004147 ORTHO05D005606 1.2e-12 78.2 43 86.0
HanXRQChr10g0307541 Helianthus annuus HOM05D004147 ORTHO05D005606 5.8e-12 75.9 102 44.1


User provided reference genes

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