Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p09260 Brassica napus HOM05D008043 ORTHO05D010395 6.6e-58 227.3 123 100.0
C04p09090 Brassica napus HOM05D008043 ORTHO05D010395 3.9e-34 148.3 96 89.6
BolC4t22502H Brassica oleracea HOM05D008043 ORTHO05D010395 3.9e-34 148.3 96 89.6
BolC4t22503H Brassica oleracea HOM05D008043 ORTHO05D010395 3.9e-34 148.3 96 88.5
C04p09250 Brassica napus HOM05D008043 ORTHO05D010395 8.7e-34 147.1 96 89.6
BcaC02g11982 Brassica carinata HOM05D008043 ORTHO05D010395 1.5e-33 146.4 90 93.3
BolC4t22531H Brassica oleracea HOM05D008043 ORTHO05D010395 1.5e-33 146.4 90 93.3
BolC4t22534H Brassica oleracea HOM05D008043 ORTHO05D010395 1.3e-32 143.3 90 92.2
BolC4t22514H Brassica oleracea HOM05D008043 ORTHO05D010395 6.2e-32 141.0 96 85.4
BraA05t19738Z Brassica rapa HOM05D008043 ORTHO05D010395 1.4e-31 139.8 90 90.0
BcaC02g11993 Brassica carinata HOM05D008043 ORTHO05D010395 2.4e-31 139.0 90 88.9
A05p07710 Brassica napus HOM05D008043 ORTHO05D010395 3.1e-31 138.7 90 88.9
C04p09330 Brassica napus HOM05D008043 ORTHO05D010395 3.1e-31 138.7 90 87.8
BcaB02g09206 Brassica carinata HOM05D008043 ORTHO05D010395 5.3e-31 137.9 90 80.0
BcaC02g11979 Brassica carinata HOM05D008043 ORTHO05D010395 2.0e-30 136.0 90 88.9
C04p09280 Brassica napus HOM05D008043 ORTHO05D010395 3.4e-30 135.2 96 82.3
BcaC02g11981 Brassica carinata HOM05D008043 ORTHO05D010395 2.9e-29 132.1 91 83.5
BcaB02g09207 Brassica carinata HOM05D008043 ORTHO05D010395 2.2e-24 115.9 87 77.0
BcaB02g09171 Brassica carinata HOM05D008043 ORTHO05D010395 4.8e-24 114.8 90 66.7
AL8G34510 Arabidopsis lyrata HOM05D008043 ORTHO05D010395 6.9e-15 84.3 93 47.3
BcaB05g22710 Brassica carinata HOM05D008043 ORTHO05D010395 5.9e-14 81.3 62 58.1
Carub.0006s2942 Capsella rubella HOM05D008043 ORTHO05D010395 1.3e-13 80.1 62 58.1
Thhalv10015284m.g Eutrema salsugineum HOM05D008043 ORTHO05D010395 1.7e-13 79.7 99 41.4
BcaC03g13905 Brassica carinata HOM05D001688 ORTHO05D010395 3.8e-13 78.6 62 58.1
C02p11120 Brassica napus HOM05D008043 ORTHO05D010395 3.8e-13 78.6 62 58.1
BolC2t07184H Brassica oleracea HOM05D008043 ORTHO05D010395 3.8e-13 78.6 62 58.1
BraA02t05677Z Brassica rapa HOM05D008043 ORTHO05D010395 3.8e-13 78.6 62 56.5
AL132U10010 Arabidopsis lyrata HOM05D008043 ORTHO05D031374 6.5e-13 77.8 62 59.7
BNapus_Darmor_BZH_scaffold_38p00490 Brassica napus HOM05D008043 ORTHO05D010395 6.5e-13 77.8 62 54.8
Thhalv10014402m.g Eutrema salsugineum HOM05D008043 ORTHO05D010395 6.5e-13 77.8 61 62.3
BolC3t19988H Brassica oleracea HOM05D008043 ORTHO05D010395 1.4e-12 76.6 98 41.8
Thhalv10015531m.g Eutrema salsugineum HOM05D008043 ORTHO05D010395 1.9e-12 76.3 62 56.5
BcaC01g00257 Brassica carinata HOM05D008043 ORTHO05D010395 2.5e-12 75.9 98 41.8
A08p23990 Brassica napus HOM05D008043 ORTHO05D010395 2.5e-12 75.9 98 41.8
C03p77350 Brassica napus HOM05D008043 ORTHO05D010395 2.5e-12 75.9 98 41.8
BraA08t34356Z Brassica rapa HOM05D008043 ORTHO05D010395 2.5e-12 75.9 98 41.8
Thhalv10026891m.g Eutrema salsugineum HOM05D008043 ORTHO05D010395 1.6e-11 73.2 118 34.7
Carub.0008s1892 Capsella rubella HOM05D008043 ORTHO05D010395 2.7e-11 72.4 58 58.6
BcaC05g27059 Brassica carinata HOM05D008043 ORTHO05D010395 7.9e-11 70.9 85 40.0
C05p29170 Brassica napus HOM05D008043 ORTHO05D010395 7.9e-11 70.9 85 40.0
AL7G25500 Arabidopsis lyrata HOM05D008043 ORTHO05D010395 2.3e-10 69.3 59 54.2
A09p36190 Brassica napus HOM05D008043 ORTHO05D010395 2.3e-10 69.3 85 40.0
BraA09t39144Z Brassica rapa HOM05D008043 ORTHO05D010395 6.7e-10 67.8 85 38.8
BcaNung06005 Brassica carinata HOM05D008043 ORTHO05D010395 1.5e-09 66.6 62 48.4
Sp1g35830 Schrenkiella parvula HOM05D002658 ORTHO05D003000 1.5e-09 66.6 54 57.4
BcaB03g12228 Brassica carinata HOM05D008043 ORTHO05D010395 2.6e-09 65.9 62 50.0
Aa31LG8G14450 Aethionema arabicum HOM05D008043 ORTHO05D010395 4.4e-09 65.1 61 50.8
Aa31LG8G14460 Aethionema arabicum HOM05D008043 ORTHO05D010395 5.7e-09 64.7 62 50.0
Thhalv10011361m.g Eutrema salsugineum HOM05D002658 ORTHO05D003000 5.7e-09 64.7 54 53.7
Zm00001eb046260 Zea mays HOM05D002658 ORTHO05D003000 5.7e-09 64.7 50 50.0
AT3G18610 Arabidopsis thaliana HOM05D002658 ORTHO05D003000 7.4e-09 64.3 58 50.0
Carub.0001s3809 Capsella rubella HOM05D002658 ORTHO05D003000 9.7e-09 63.9 54 51.9
Duzib248G1296 Durio zibethinus HOM05D002658 ORTHO05D003000 9.7e-09 63.9 67 44.8
Thecc.02G160500 Theobroma cacao HOM05D002658 ORTHO05D003000 1.3e-08 63.5 49 57.1
Aa31LG8G14480 Aethionema arabicum HOM05D008043 ORTHO05D010395 2.2e-08 62.8 53 52.8
Carub.0005s0862 Capsella rubella HOM05D008043 ORTHO05D031374 2.2e-08 62.8 64 45.3
Thhalv10020940m.g Eutrema salsugineum HOM05D002658 ORTHO05D003000 2.2e-08 62.8 55 52.7
RcHm_v2.0_Chr4g0446621 Rosa chinensis HOM05D002658 ORTHO05D003000 2.2e-08 62.8 58 51.7
Sp7g36960 Schrenkiella parvula HOM05D008043 ORTHO05D010395 2.2e-08 62.8 62 48.4
AL1G55750 Arabidopsis lyrata HOM05D002658 ORTHO05D003000 2.8e-08 62.4 55 50.9
AT1G73490 Arabidopsis thaliana HOM05D008043 ORTHO05D010395 2.8e-08 62.4 61 49.2
Carub.0006s2724 Capsella rubella HOM05D002658 ORTHO05D010395 2.8e-08 62.4 49 57.1
Carub.0006s3662 Capsella rubella HOM05D008043 ORTHO05D031374 2.8e-08 62.4 64 45.3
Thhalv10027509m.g Eutrema salsugineum HOM05D008043 ORTHO05D010395 2.8e-08 62.4 64 50.0
Sabra05G0077200 Salix brachista HOM05D002658 ORTHO05D003000 2.8e-08 62.4 54 50.0
BraA08t32458Z Brassica rapa HOM05D002658 ORTHO05D003000 3.7e-08 62.0 54 51.9
Ciclev10030875m.g Citrus clementina HOM05D002658 ORTHO05D003000 3.7e-08 62.0 58 44.8
Duzib052G0136 Durio zibethinus HOM05D002658 ORTHO05D003000 3.7e-08 62.0 70 42.9
FvH4_5g39267 Fragaria vesca HOM05D002658 ORTHO05D003000 3.7e-08 62.0 58 51.7
FAN07G0595 Fragaria x ananassa HOM05D002658 ORTHO05D003000 3.7e-08 62.0 58 50.0
FAN08G3096 Fragaria x ananassa HOM05D002658 ORTHO05D003000 3.7e-08 62.0 58 51.7
A06p04110 Brassica napus HOM05D002658 ORTHO05D003000 4.8e-08 61.6 54 51.9
A06p04130 Brassica napus HOM05D000335 ORTHO05D003000 4.8e-08 61.6 54 51.9
BraA06t23617Z Brassica rapa HOM05D002658 ORTHO05D003000 4.8e-08 61.6 54 51.9
Gohir.A13G060000 Gossypium hirsutum HOM05D002658 ORTHO05D003000 4.8e-08 61.6 49 53.1
Gohir.D13G061900 Gossypium hirsutum HOM05D002658 ORTHO05D003000 4.8e-08 61.6 49 53.1
Gorai.013G070400 Gossypium raimondii HOM05D002658 ORTHO05D003000 4.8e-08 61.6 49 53.1
Phvul.011G030600 Phaseolus vulgaris HOM05D002658 ORTHO05D003000 4.8e-08 61.6 58 50.0
Potri.005G093100 Populus trichocarpa HOM05D002658 ORTHO05D003000 4.8e-08 61.6 58 48.3
BcaB04g17378 Brassica carinata HOM05D002658 ORTHO05D003000 6.3e-08 61.2 54 55.6
BcaB07g33701 Brassica carinata HOM05D002658 ORTHO05D003000 6.3e-08 61.2 54 57.4
BcaC07g37093 Brassica carinata HOM05D002658 ORTHO05D003000 6.3e-08 61.2 54 51.9
C08p04580 Brassica napus HOM05D002658 ORTHO05D003000 6.3e-08 61.2 54 51.9
Duzib132G0973 Durio zibethinus HOM05D002658 ORTHO05D003000 6.3e-08 61.2 49 51.0
MD13G1006400 Malus domestica HOM05D002658 ORTHO05D003000 6.3e-08 61.2 49 59.2
BcaC05g27545 Brassica carinata HOM05D002658 ORTHO05D003000 8.2e-08 60.8 60 46.7
BcaC08g43092 Brassica carinata HOM05D002658 ORTHO05D003000 8.2e-08 60.8 54 53.7
A05p20830 Brassica napus HOM05D002658 ORTHO05D003000 8.2e-08 60.8 54 50.0
C05p35300 Brassica napus HOM05D002658 ORTHO05D003000 8.2e-08 60.8 60 46.7
C06p03520 Brassica napus HOM05D002658 ORTHO05D003000 8.2e-08 60.8 54 53.7
BolC5t32244H Brassica oleracea HOM05D002658 ORTHO05D003000 8.2e-08 60.8 60 46.7
BolC6t35492H Brassica oleracea HOM05D002658 ORTHO05D003000 8.2e-08 60.8 54 53.7
BraA05t20989Z Brassica rapa HOM05D002658 ORTHO05D003000 8.2e-08 60.8 54 50.0
CDE12G0003 Ceratophyllum demersum HOM05D002658 ORTHO05D003000 8.2e-08 60.8 50 50.0
MD16G1001600 Malus domestica HOM05D002658 ORTHO05D003000 8.2e-08 60.8 49 57.1
THA.LOC104810678 Tarenaya hassleriana HOM05D002658 ORTHO05D003000 8.2e-08 60.8 49 53.1
Zm00001eb171320 Zea mays HOM05D002658 ORTHO05D003000 8.2e-08 60.8 58 50.0
Atru.chr11.1170 Acer truncatum HOM05D002658 ORTHO05D003000 1.1e-07 60.5 56 48.2
Aa31LG10G5000 Aethionema arabicum HOM05D002658 ORTHO05D003000 1.1e-07 60.5 49 53.1
BcaB02g11292 Brassica carinata HOM05D002658 ORTHO05D003000 1.1e-07 60.5 54 50.0
A08p04310 Brassica napus HOM05D002658 ORTHO05D003000 1.1e-07 60.5 52 51.9
Ca_19028_v3 Cicer arietinum L. HOM05D002658 ORTHO05D003000 1.1e-07 60.5 49 51.0
AT1G48920 Arabidopsis thaliana HOM05D002658 ORTHO05D003000 1.4e-07 60.1 55 50.9
BolC8t47262H Brassica oleracea HOM05D002658 ORTHO05D003000 1.4e-07 60.1 53 52.8
CDE01G0413 Ceratophyllum demersum HOM05D002658 ORTHO05D003000 1.4e-07 60.1 50 48.0
MELO3C024024.2 Cucumis melo HOM05D002658 ORTHO05D003000 1.4e-07 60.1 49 53.1
Glyma.11G101500 Glycine max HOM05D002658 ORTHO05D003000 1.4e-07 60.1 59 44.1
Gohir.D12G137566 Gossypium hirsutum HOM05D002658 ORTHO05D003000 1.4e-07 60.1 52 48.1
Gorai.008G149100 Gossypium raimondii HOM05D002658 ORTHO05D003000 1.4e-07 60.1 52 48.1
FvH4_4g36861 Fragaria vesca HOM05D002658 ORTHO05D003000 1.8e-07 59.7 49 53.1
FAN12G1156 Fragaria x ananassa HOM05D002658 ORTHO05D003000 1.8e-07 59.7 49 53.1
FAN17G0854 Fragaria x ananassa HOM05D002658 ORTHO05D003000 1.8e-07 59.7 58 48.3
Potri.007G071100 Populus trichocarpa HOM05D002658 ORTHO05D003000 1.8e-07 59.7 58 48.3
CARHR038910 Cardamine hirsuta HOM05D002658 ORTHO05D003000 2.4e-07 59.3 54 51.9
MBI18_g11231_MAGBIO Magnolia biondii HOM05D002658 ORTHO05D003000 2.4e-07 59.3 52 51.9
Sabra07G0059800 Salix brachista HOM05D002658 ORTHO05D003000 2.4e-07 59.3 58 46.6
THA.LOC104820414 Tarenaya hassleriana HOM05D002658 ORTHO05D003000 2.4e-07 59.3 49 53.1
TPR.G32352 Trifolium pratense HOM05D002658 ORTHO05D003000 2.4e-07 59.3 54 48.1
Actinidia04307 Actinidia chinensis HOM05D002658 ORTHO05D003000 3.1e-07 58.9 49 49.0
BcaB06g25912 Brassica carinata HOM05D002658 ORTHO05D003000 3.1e-07 58.9 58 44.8
BolC5t31648H Brassica oleracea HOM05D008043 ORTHO05D010395 3.1e-07 58.9 54 48.1
ClCG10G011940 Citrullus lanatus HOM05D002658 ORTHO05D003000 3.1e-07 58.9 49 55.1
Nn3g18649 Nelumbo nucifera HOM05D002658 ORTHO05D003000 3.1e-07 58.9 49 49.0
Psat7g173280 Pisum sativum HOM05D002658 ORTHO05D003000 3.1e-07 58.9 60 41.7
Sed0002082 Sechium edule HOM05D002658 ORTHO05D003000 3.1e-07 58.9 60 50.0
TAR629G2145 Trochodendron aralioides HOM05D002658 ORTHO05D003000 3.1e-07 58.9 53 47.2
TAR629G3397 Trochodendron aralioides HOM05D002658 ORTHO05D003000 3.1e-07 58.9 53 47.2
AL3G31920 Arabidopsis lyrata HOM05D002658 ORTHO05D003000 4.1e-07 58.5 58 48.3
Carub.0008s1890 Capsella rubella HOM05D008043 ORTHO05D010395 4.1e-07 58.5 44 61.4
Haze_11751 Corylus avellana HOM05D002658 ORTHO05D003000 4.1e-07 58.5 50 52.0
BcaC05g28596 Brassica carinata HOM05D002658 ORTHO05D003000 5.3e-07 58.2 58 44.8
BolC5t33429H Brassica oleracea HOM05D002658 ORTHO05D003000 5.3e-07 58.2 58 44.8
Cpa.g.sc183.5 Carica papaya HOM05D002658 ORTHO05D003000 5.3e-07 58.2 58 44.8
DCAR_023453 Daucus carota HOM05D002658 ORTHO05D003000 5.3e-07 58.2 50 48.0
Glyma.12G027400 Glycine max HOM05D002658 ORTHO05D003000 5.3e-07 58.2 58 44.8
AL8G33140 Arabidopsis lyrata HOM05D008043 ORTHO05D010395 7.0e-07 57.8 87 41.4
A03p51150 Brassica napus HOM05D008043 ORTHO05D010395 7.0e-07 57.8 52 48.1
A05p31010 Brassica napus HOM05D002658 ORTHO05D003000 7.0e-07 57.8 58 44.8
BraA05t21943Z Brassica rapa HOM05D002658 ORTHO05D003000 7.0e-07 57.8 58 44.8
Manes.04G057000 Manihot esculenta HOM05D002658 ORTHO05D003000 7.0e-07 57.8 48 52.1
Zm00001eb090640 Zea mays HOM05D002658 ORTHO05D003000 7.0e-07 57.8 53 47.2
BcaB06g25913 Brassica carinata HOM05D002658 ORTHO05D003000 9.1e-07 57.4 53 49.1
BcaC05g28592 Brassica carinata HOM05D002658 ORTHO05D003000 9.1e-07 57.4 53 49.1
Carub.0003s1839 Capsella rubella HOM05D002658 ORTHO05D003000 9.1e-07 57.4 56 44.6
COL.COLO4_19606 Corchorus olitorius HOM05D002658 ORTHO05D003000 9.1e-07 57.4 49 42.9
Os04g0620700 Oryza sativa ssp. japonica HOM05D002658 ORTHO05D003000 9.1e-07 57.4 50 50.0
Sed0005223 Sechium edule HOM05D002658 ORTHO05D003000 9.1e-07 57.4 54 50.0
A05p31000 Brassica napus HOM05D002658 ORTHO05D003000 1.2e-06 57.0 49 53.1
BraA05t21942Z Brassica rapa HOM05D002658 ORTHO05D003000 1.2e-06 57.0 49 53.1
CSS0029052 Camellia sinensis var. sinensis HOM05D002658 ORTHO05D003000 1.2e-06 57.0 49 53.1
TWI53G1249 Tripterygium wilfordii HOM05D002658 ORTHO05D003000 1.2e-06 57.0 54 44.4
GSVIVG01012042001 Vitis vinifera HOM05D002658 ORTHO05D003000 1.2e-06 57.0 54 42.6
AL8G34460 Arabidopsis lyrata HOM05D008043 ORTHO05D010395 1.5e-06 56.6 87 40.2
BcaC05g28595 Brassica carinata HOM05D002658 ORTHO05D003000 1.5e-06 56.6 49 53.1
C05p46990 Brassica napus HOM05D002658 ORTHO05D003000 1.5e-06 56.6 49 53.1
BolC5t33428H Brassica oleracea HOM05D002658 ORTHO05D003000 1.5e-06 56.6 49 53.1
ECA233G2635 Erigeron canadensis HOM05D000058 ORTHO05D000077 1.5e-06 56.6 49 46.9
QL03p044151 Quercus lobata HOM05D002658 ORTHO05D003000 1.5e-06 56.6 50 46.0
Lsat_1_v5_gn_4_65420 Lactuca sativa HOM05D002658 ORTHO05D003000 2.0e-06 56.2 49 51.0
Manes.04G053300 Manihot esculenta HOM05D002658 ORTHO05D003000 2.0e-06 56.2 48 50.0
Os08g0192900 Oryza sativa ssp. japonica HOM05D002658 ORTHO05D003000 2.0e-06 56.2 52 48.1
PSO063G6725 Papaver somniferum HOM05D002658 ORTHO05D003000 2.0e-06 56.2 54 48.1
Sc06g0007980 Simmondsia chinensis HOM05D002658 ORTHO05D003000 2.0e-06 56.2 60 45.0
CsaV3_3G031420 Cucumis sativus L. HOM05D002658 ORTHO05D003000 2.6e-06 55.8 49 51.0
Lalb_Chr19g0139381 Lupinus albus HOM05D002658 ORTHO05D003000 2.6e-06 55.8 49 44.9
Hund08548 Selenicereus undatus HOM05D000185 ORTHO05D000105 2.6e-06 55.8 49 53.1
VMungo1127G1795 Vigna mungo HOM05D002658 ORTHO05D003000 2.6e-06 55.8 50 44.0
Ah.01g012180 Amaranthus hybridus HOM05D002658 ORTHO05D003000 3.4e-06 55.5 54 46.3
Carub.0002s1964 Capsella rubella HOM05D002658 ORTHO05D021408 3.4e-06 55.5 54 50.0
CARHR065710 Cardamine hirsuta HOM05D002658 ORTHO05D021408 3.4e-06 55.5 54 53.7
CiPaw.06G060000 Carya illinoinensis HOM05D002658 ORTHO05D003000 3.4e-06 55.5 60 43.3
Lj3g0010214 Lotus japonicus HOM05D002658 ORTHO05D003000 3.4e-06 55.5 58 43.1
C05p47000 Brassica napus HOM05D000032 ORTHO05D003522 4.5e-06 55.1 58 43.1
CARHR259720 Cardamine hirsuta HOM05D002658 ORTHO05D010395 4.5e-06 55.1 57 45.6
Rhsim09G0074900 Rhododendron simsii HOM05D002658 ORTHO05D003000 4.5e-06 55.1 56 42.9
SMO228G0128 Selaginella moellendorffii HOM05D002658 ORTHO05D003000 4.5e-06 55.1 60 43.3
AT1G72800 Arabidopsis thaliana HOM05D002658 ORTHO05D021408 5.9e-06 54.7 52 55.8
Hma1.2p1_1683F.1_g297380 Hydrangea macrophylla HOM05D002658 ORTHO05D003000 5.9e-06 54.7 49 46.9
MBI02_g07021_MAGBIO Magnolia biondii HOM05D002658 ORTHO05D003000 5.9e-06 54.7 60 41.7
Prupe.1G346800 Prunus persica HOM05D002658 ORTHO05D003000 5.9e-06 54.7 54 44.4
Lalb_Chr01g0001461 Lupinus albus HOM05D002658 ORTHO05D003000 7.7e-06 54.3 49 42.9
HPP92_026528 Vanilla planifolia HOM05D002658 ORTHO05D003000 7.7e-06 54.3 55 43.6
HPP92_026555 Vanilla planifolia HOM05D002658 ORTHO05D003000 7.7e-06 54.3 55 43.6


User provided reference genes

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