Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p05950 Brassica napus HOM05D005846 ORTHO05D007369 1.2e-228 797.0 720 100.0
BolC4t22226H Brassica oleracea HOM05D005846 ORTHO05D007369 1.2e-228 797.0 720 100.0
BcaC02g12270 Brassica carinata HOM05D005846 ORTHO05D007369 7.2e-221 771.2 771 93.3
BraA05t19484Z Brassica rapa HOM05D005846 ORTHO05D007369 7.6e-146 521.9 392 91.8
A05p05100 Brassica napus HOM05D005846 ORTHO05D007369 9.7e-125 451.8 791 72.9
Sp4g27070 Schrenkiella parvula HOM05D005846 ORTHO05D007369 1.7e-108 397.9 644 57.5
Thhalv10001339m.g Eutrema salsugineum HOM05D005846 ORTHO05D007369 8.5e-105 385.6 220 94.5
AL4G44100 Arabidopsis lyrata HOM05D005846 ORTHO05D007369 2.1e-103 380.9 220 93.2
AT2G45000 Arabidopsis thaliana HOM05D005846 ORTHO05D007369 2.1e-103 380.9 220 93.2
CARHR140260 Cardamine hirsuta HOM05D005846 ORTHO05D007369 2.1e-103 380.9 220 93.2
Carub.0004s2760 Capsella rubella HOM05D005846 ORTHO05D007369 1.8e-102 377.9 220 92.7
THA.LOC104802481 Tarenaya hassleriana HOM05D005846 ORTHO05D007369 2.7e-98 364.0 220 88.6
QL04p035021 Quercus lobata HOM05D005846 ORTHO05D007369 5.2e-94 349.7 218 86.2
Aa31LG1G26590 Aethionema arabicum HOM05D005846 ORTHO05D007369 8.8e-94 349.0 220 84.5
arahy.Tifrunner.gnm1.ann1.DPE9LE Arachis hypogaea HOM05D005846 ORTHO05D007369 7.5e-93 345.9 213 86.4
arahy.Tifrunner.gnm1.ann1.SA9NP4 Arachis hypogaea HOM05D005846 ORTHO05D007369 7.5e-93 345.9 213 86.4
COL.COLO4_35176 Corchorus olitorius HOM05D005846 ORTHO05D007369 1.7e-92 344.7 216 85.6
Thecc.01G387400 Theobroma cacao HOM05D005846 ORTHO05D007369 3.7e-92 343.6 219 84.0
Rhsim02G0216700 Rhododendron simsii HOM05D005846 ORTHO05D007369 8.3e-92 342.4 214 83.6
Duzib116G0440 Durio zibethinus HOM05D005846 ORTHO05D007369 1.4e-91 341.7 212 84.9
Lj1g0009878 Lotus japonicus HOM05D005846 ORTHO05D007369 3.1e-91 340.5 214 85.0
Gohir.D11G145600 Gossypium hirsutum HOM05D005846 ORTHO05D007369 4.1e-91 340.1 216 82.9
Atru.chr5.196 Acer truncatum HOM05D005846 ORTHO05D007369 5.4e-91 339.7 210 86.2
CiPaw.06G031700 Carya illinoinensis HOM05D005846 ORTHO05D007369 5.4e-91 339.7 219 83.1
HanXRQChr06g0168821 Helianthus annuus HOM05D005846 ORTHO05D007369 7.0e-91 339.3 218 81.7
CANSAT21G1379 Cannabis sativa HOM05D005846 ORTHO05D007369 9.1e-91 339.0 220 82.7
Prupe.2G134200 Prunus persica HOM05D005846 ORTHO05D007369 1.2e-90 338.6 214 84.1
Cfa011122 Carpinus fangiana HOM05D005846 ORTHO05D007369 2.0e-90 337.8 214 85.0
ECA236G0469 Erigeron canadensis HOM05D005846 ORTHO05D007369 2.0e-90 337.8 219 81.7
vmacro13469 Vaccinium macrocarpon HOM05D005846 ORTHO05D007369 2.0e-90 337.8 214 82.7
Medtr7g045280 Medicago truncatula HOM05D005846 ORTHO05D007369 3.5e-90 337.0 216 83.3
MD07G1110700 Malus domestica HOM05D005846 ORTHO05D007369 5.9e-90 336.3 220 82.3
Psat3g158120 Pisum sativum HOM05D005846 ORTHO05D007369 5.9e-90 336.3 214 84.1
Gohir.A11G139400 Gossypium hirsutum HOM05D005846 ORTHO05D007369 7.7e-90 335.9 216 81.5
Ciclev10019079m.g Citrus clementina HOM05D005846 ORTHO05D007369 1.3e-89 335.1 220 80.9
Dinv44098 Davidia involucrata HOM05D005846 ORTHO05D007369 2.3e-89 334.3 220 81.4
Haze_02742 Corylus avellana HOM05D005846 ORTHO05D007369 2.9e-89 334.0 229 80.3
PGR004G1251 Punica granatum HOM05D005846 ORTHO05D007369 2.9e-89 334.0 213 83.6
RcHm_v2.0_Chr1g0348261 Rosa chinensis HOM05D005846 ORTHO05D007369 3.8e-89 333.6 210 83.8
SGA_v2.0_scaffold52G19202 Striga asiatica HOM05D005846 ORTHO05D007369 3.8e-89 333.6 212 83.5
Gorai.007G156100 Gossypium raimondii HOM05D005846 ORTHO05D007369 5.0e-89 333.2 223 80.3
VMungo1383G2837 Vigna mungo HOM05D005846 ORTHO05D007369 1.1e-88 332.0 212 84.0
Potri.014G057000 Populus trichocarpa HOM05D005846 ORTHO05D007369 2.5e-88 330.9 209 82.3
TPR.G39153 Trifolium pratense HOM05D005846 ORTHO05D007369 2.5e-88 330.9 296 71.6
GSVIVG01018216001 Vitis vinifera HOM05D005846 ORTHO05D007369 2.5e-88 330.9 220 79.5
Phvul.007G143350 Phaseolus vulgaris HOM05D005846 ORTHO05D007369 5.5e-88 329.7 214 82.2
Eucgr.D02512 Eucalyptus grandis HOM05D005846 ORTHO05D007369 9.5e-88 328.9 210 82.9
Lj9C561G11 Lonicera japonica HOM05D005846 ORTHO05D007369 9.5e-88 328.9 219 79.0
Lsat_1_v5_gn_7_11161 Lactuca sativa HOM05D005846 ORTHO05D007369 1.2e-87 328.6 223 79.4
Ca_26287_v3 Cicer arietinum L. HOM05D005846 ORTHO05D007369 1.6e-87 328.2 296 69.3
Cc02_g24740 Coffea canephora HOM05D005846 ORTHO05D007369 3.6e-87 327.0 216 80.6
Manes.05G051500 Manihot esculenta HOM05D005846 ORTHO05D007369 3.6e-87 327.0 208 83.7
CSS0006984 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 4.7e-87 326.6 214 80.8
TWI14G0811 Tripterygium wilfordii HOM05D005846 ORTHO05D007369 4.7e-87 326.6 219 79.5
Sed0022623 Sechium edule HOM05D005846 ORTHO05D007369 6.1e-87 326.2 221 78.3
CSS0013945 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 8.0e-87 325.9 214 80.8
Glyma.01G074700 Glycine max HOM05D005846 ORTHO05D007369 1.4e-86 325.1 214 82.2
Lalb_Chr19g0126671 Lupinus albus HOM05D005846 ORTHO05D007369 1.4e-86 325.1 218 79.4
Actinidia22778 Actinidia chinensis HOM05D005846 ORTHO05D007369 2.3e-86 324.3 205 82.9
Actinidia22833 Actinidia chinensis HOM05D005846 ORTHO05D007369 2.3e-86 324.3 205 82.9
Migut.B01566 Erythranthe guttata HOM05D005846 ORTHO05D007369 3.0e-86 323.9 214 80.8
CsaV3_6G009050 Cucumis sativus L. HOM05D005846 ORTHO05D007369 6.8e-86 322.8 215 79.5
DCAR_031886 Daucus carota HOM05D005846 ORTHO05D007369 6.8e-86 322.8 217 78.8
Sabra14G0041600 Salix brachista HOM05D002053 ORTHO05D002135 8.9e-86 322.4 211 80.1
Nitab4.5_0003110g0060 Nicotiana tabacum HOM05D005846 ORTHO05D007369 2.0e-85 321.2 209 81.3
Aqoxy5G03824 Aquilegia oxysepala HOM05D005846 ORTHO05D007369 3.4e-85 320.5 219 77.6
Ah.05g173450 Amaranthus hybridus HOM05D005846 ORTHO05D007369 4.4e-85 320.1 210 81.9
Glyma.11G162365 Glycine max HOM05D005846 ORTHO05D007369 5.7e-85 319.7 202 84.2
FAN03G1473 Fragaria x ananassa HOM05D005846 ORTHO05D007369 7.5e-85 319.3 210 80.0
FAN06G0321 Fragaria x ananassa HOM05D005846 ORTHO05D007369 7.5e-85 319.3 210 80.0
Hund27391 Selenicereus undatus HOM05D005846 ORTHO05D007369 7.5e-85 319.3 209 80.9
FAN01G1706 Fragaria x ananassa HOM05D005846 ORTHO05D007369 9.8e-85 318.9 210 80.0
FAN10G4209 Fragaria x ananassa HOM05D005846 ORTHO05D007369 9.8e-85 318.9 210 80.0
FAN10G1341 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.7e-84 318.2 210 80.0
MBI05_g14240_MAGBIO Magnolia biondii HOM05D005846 ORTHO05D007369 1.1e-83 315.5 214 76.6
FAN06G3163 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.4e-83 315.1 210 79.0
CAN.G899.26 Capsicum annuum HOM05D005846 ORTHO05D007369 1.8e-83 314.7 213 78.9
Solyc01g090670.3 Solanum lycopersicum HOM05D005846 ORTHO05D007369 3.1e-83 313.9 209 79.9
MSTRG.28219 Avicennia marina HOM05D005846 ORTHO05D007369 7.0e-83 312.8 213 78.9
EL10Ac1g00809 Beta vulgaris HOM05D005846 ORTHO05D007369 7.0e-83 312.8 203 82.3
Sopen01g036400 Solanum pennellii HOM05D005846 ORTHO05D007369 1.6e-82 311.6 209 79.4
Peaxi162Scf00377g00722 Petunia axillaris HOM05D005846 ORTHO05D007369 2.1e-79 301.2 196 81.6
unitig_26.g8879 Utricularia gibba HOM05D005846 ORTHO05D007369 6.1e-79 299.7 217 71.4
PSO541G5798 Papaver somniferum HOM05D005846 ORTHO05D007369 8.0e-79 299.3 213 74.6
MELO3C022237.2 Cucumis melo HOM05D005846 ORTHO05D007369 1.0e-78 298.9 253 67.2
PSO675G5996 Papaver somniferum HOM05D005846 ORTHO05D007369 1.0e-78 298.9 213 74.6
ClCG06G002930 Citrullus lanatus HOM05D005846 ORTHO05D007369 3.4e-77 293.9 197 79.2
CDE02G2440 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 6.4e-76 289.7 296 57.4
TAR375G0515 Trochodendron aralioides HOM05D005846 ORTHO05D007369 1.4e-75 288.5 185 80.5
ATR0559G037 Amborella trichopoda HOM05D005846 ORTHO05D007369 9.2e-75 285.8 201 73.1
Nn6g33892 Nelumbo nucifera HOM05D005846 ORTHO05D007369 1.6e-74 285.0 190 77.9
Oeu061505.1 Olea europaea HOM05D005846 ORTHO05D007369 1.7e-73 281.6 182 79.7
HanXRQChr04g0123471 Helianthus annuus HOM05D005846 ORTHO05D007369 5.0e-73 280.0 188 77.7
CDE04G1707 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 1.9e-72 278.1 295 54.9
Zm00001eb367060 Zea mays HOM05D005846 ORTHO05D007369 4.3e-72 276.9 219 66.2
FvH4_7g10470 Fragaria vesca HOM05D005846 ORTHO05D007369 3.6e-71 273.9 178 80.9
arahy.Tifrunner.gnm1.ann1.2XVX2B Arachis hypogaea HOM05D005846 ORTHO05D007369 9.8e-69 265.8 226 67.7
AagrBONN_evm.TU.Sc2ySwM_117.1077 Anthoceros agrestis HOM05D005846 ORTHO05D007369 7.0e-67 259.6 205 64.9
Pp3c15_14630 Physcomitrium patens HOM05D005846 ORTHO05D007369 4.6e-66 256.9 201 66.7
AUR62004139 Chenopodium quinoa HOM05D005846 ORTHO05D007369 6.0e-66 256.5 201 70.1
HPP92_027757 Vanilla planifolia HOM05D005846 ORTHO05D007369 3.9e-65 253.8 199 66.3
PGR004G1857 Punica granatum HOM05D005846 ORTHO05D007369 5.2e-62 243.4 164 80.5
AUR62013700 Chenopodium quinoa HOM05D005846 ORTHO05D007369 4.4e-61 240.4 188 70.7
Mapoly0005s0221 Marchantia polymorpha HOM05D005846 ORTHO05D007369 4.1e-59 233.8 408 44.9
Sc02g0002920 Simmondsia chinensis HOM05D005846 ORTHO05D007369 2.1e-58 231.5 179 71.5
CBR_g21126 Chara braunii HOM05D005846 ORTHO05D007369 1.5e-53 215.3 208 57.7
Nitab4.5_0001823g0090 Nicotiana tabacum HOM05D005846 ORTHO05D007369 2.6e-53 214.5 172 70.9
HPP92_002750 Vanilla planifolia HOM05D005846 ORTHO05D007369 2.4e-38 164.9 157 55.4
Atru.chr5.198 Acer truncatum HOM05D002424 ORTHO05D002640 5.6e-32 143.7 95 80.0
Os01g0856600 Oryza sativa ssp. japonica HOM05D005846 ORTHO05D007369 6.9e-30 136.7 116 60.3
arahy.Tifrunner.gnm1.ann1.V1AVP1 Arachis hypogaea HOM05D005846 ORTHO05D007369 4.5e-29 134.0 103 73.8
QL04p035108 Quercus lobata HOM05D005846 ORTHO05D007369 1.3e-25 122.5 80 82.5
PRCOL_00002612 Prasinoderma coloniale HOM05D005846 ORTHO05D007369 1.8e-25 122.1 215 36.7
Cre16.g677700 Chlamydomonas reinhardtii HOM05D005846 ORTHO05D007369 1.1e-24 119.4 195 39.0
Cpa.g.sc22.5 Carica papaya HOM05D005846 ORTHO05D007369 5.7e-24 117.1 82 76.8
QL04p035237 Quercus lobata HOM05D005846 ORTHO05D007369 3.1e-22 111.3 72 83.3
QL05p084337 Quercus lobata HOM05D005846 ORTHO05D007369 5.3e-22 110.5 64 85.9
C09p68450 Brassica napus HOM05D005846 ORTHO05D007369 5.8e-21 107.1 73 78.1
Cpa.g.sc22.4 Carica papaya HOM05D005846 ORTHO05D007369 1.0e-20 106.3 74 71.6
HanXRQChr12g0364311 Helianthus annuus HOM05D005846 ORTHO05D007369 3.0e-17 94.7 56 82.1
HPP92_002751 Vanilla planifolia HOM05D005846 ORTHO05D007369 4.3e-16 90.9 65 67.7
HanXRQChr16g0530801 Helianthus annuus HOM05D005846 ORTHO05D007369 5.7e-16 90.5 180 36.1
Atru.chr5.201 Acer truncatum HOM05D005846 ORTHO05D007369 7.4e-16 90.1 64 75.0
MCO01G259 Micromonas commoda HOM05D005846 ORTHO05D007369 9.7e-16 89.7 142 37.3
MCO01G299 Micromonas commoda HOM05D005846 ORTHO05D007369 9.7e-16 89.7 183 32.8
A05p20700 Brassica napus HOM05D005846 ORTHO05D007369 2.4e-14 85.1 52 80.8
HanXRQChr01g0009681 Helianthus annuus HOM05D005846 ORTHO05D007369 4.1e-14 84.3 168 35.1
Lsat_1_v5_gn_4_126501 Lactuca sativa HOM05D005846 ORTHO05D007369 9.0e-14 83.2 63 68.3
HPP92_006013 Vanilla planifolia HOM05D005846 ORTHO05D007369 3.8e-12 77.8 107 42.1
HanXRQChr02g0053971 Helianthus annuus HOM05D005846 ORTHO05D000176 2.5e-11 75.1 159 35.2
BolC9t59592H Brassica oleracea HOM05D022734 ORTHO05D024517 8.8e-09 66.6 35 91.4
SalBow5G1215 Salvia bowleyana HOM05D005846 ORTHO05D007369 2.0e-08 65.5 67 59.7
A03p12170 Brassica napus HOM05D022734 ORTHO05D024517 1.7e-07 62.4 38 86.8
HanXRQChr12g0366671 Helianthus annuus HOM05D005846 ORTHO05D007369 8.2e-07 60.1 36 80.6


User provided reference genes

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