Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p05070 Brassica napus HOM05D005328 ORTHO05D006049 2.3e-201 705.7 448 100.0
BcaC02g12330 Brassica carinata HOM05D005328 ORTHO05D006049 8.5e-196 687.2 448 93.5
BraA05t19414Z Brassica rapa HOM05D005328 ORTHO05D006049 2.0e-192 676.0 448 94.2
A05p04290 Brassica napus HOM05D005328 ORTHO05D006049 3.8e-188 661.8 448 93.8
BcaB02g08879 Brassica carinata HOM05D005328 ORTHO05D006049 5.5e-179 631.3 448 90.8
C03p29470 Brassica napus HOM05D005328 ORTHO05D006049 4.9e-151 538.5 460 79.8
BcaC01g05181 Brassica carinata HOM05D005328 ORTHO05D006049 1.1e-150 537.3 460 79.6
A03p24730 Brassica napus HOM05D005328 ORTHO05D006049 1.1e-145 520.8 483 72.3
BraA03t11679Z Brassica rapa HOM05D005328 ORTHO05D006049 3.1e-145 519.2 483 71.8
Sp4g26280 Schrenkiella parvula HOM05D005328 ORTHO05D006049 1.3e-143 513.8 475 77.9
BolC3t15295H Brassica oleracea HOM05D005328 ORTHO05D006049 3.1e-137 492.7 490 72.9
AL4G43160 Arabidopsis lyrata HOM05D005328 ORTHO05D006049 3.4e-136 489.2 469 75.3
CARHR139360 Cardamine hirsuta HOM05D005328 ORTHO05D006049 5.4e-134 481.9 512 71.3
Aa31LG1G25860 Aethionema arabicum HOM05D005328 ORTHO05D006049 2.6e-128 463.0 482 60.2
AT2G44200 Arabidopsis thaliana HOM05D005328 ORTHO05D006049 4.5e-128 462.2 501 70.1
Thhalv10001457m.g Eutrema salsugineum HOM05D005328 ORTHO05D006049 2.9e-127 459.5 480 65.6
Carub.0004s2678 Capsella rubella HOM05D005328 ORTHO05D006049 5.4e-126 455.3 529 67.5
BcaB01g03324 Brassica carinata HOM05D005328 ORTHO05D006049 2.4e-121 439.9 453 63.8
THA.LOC104804861 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 2.5e-102 376.7 475 63.8
THA.LOC104807080 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 2.5e-102 376.7 475 63.8
Thecc.04G160200 Theobroma cacao HOM05D005328 ORTHO05D006049 9.7e-91 338.2 478 51.0
Manes.03G095600 Manihot esculenta HOM05D005328 ORTHO05D006049 1.5e-88 330.9 461 50.3
Rhsim13G0137800 Rhododendron simsii HOM05D005328 ORTHO05D006049 3.6e-85 319.7 462 49.8
Hma1.2p1_0391F.1_g142830 Hydrangea macrophylla HOM05D005328 ORTHO05D006049 1.3e-82 311.2 455 52.1
Gohir.A02G007200 Gossypium hirsutum HOM05D005328 ORTHO05D006049 1.1e-81 308.1 465 50.1
Cpa.g.sc53.124 Carica papaya HOM05D005328 ORTHO05D006049 1.8e-81 307.4 488 46.7
COL.COLO4_12851 Corchorus olitorius HOM05D005328 ORTHO05D006049 2.4e-81 307.0 479 51.8
Phvul.006G134100 Phaseolus vulgaris HOM05D005328 ORTHO05D006049 4.1e-81 306.2 486 50.4
Gorai.005G008200 Gossypium raimondii HOM05D005328 ORTHO05D006049 5.3e-81 305.8 462 52.2
Hund04726 Selenicereus undatus HOM05D005328 ORTHO05D006049 7.0e-81 305.4 463 57.5
Dinv04372 Davidia involucrata HOM05D005328 ORTHO05D006049 3.5e-80 303.1 456 48.0
VMungo0540G0318 Vigna mungo HOM05D005328 ORTHO05D006049 4.5e-80 302.8 502 43.8
Sc13g0008540 Simmondsia chinensis HOM05D005328 ORTHO05D006049 7.7e-80 302.0 458 51.5
ECA234G3238 Erigeron canadensis HOM05D005328 ORTHO05D006049 1.7e-79 300.8 460 48.0
Eucgr.E04239 Eucalyptus grandis HOM05D005328 ORTHO05D006049 2.9e-79 300.1 474 47.5
Gohir.D02G007001 Gossypium hirsutum HOM05D005328 ORTHO05D006049 2.9e-79 300.1 461 49.5
CSS0022453 Camellia sinensis var. sinensis HOM05D005328 ORTHO05D006049 5.0e-79 299.3 471 49.5
CAN.G2049.4 Capsicum annuum HOM05D005328 ORTHO05D006049 6.5e-79 298.9 473 48.0
PGR042G0801 Punica granatum HOM05D005328 ORTHO05D006049 8.5e-79 298.5 470 46.6
TWI63G1825 Tripterygium wilfordii HOM05D005328 ORTHO05D006049 8.5e-79 298.5 462 50.9
Nitab4.5_0005721g0030 Nicotiana tabacum HOM05D005328 ORTHO05D006049 1.1e-78 298.1 459 47.9
Actinidia02271 Actinidia chinensis HOM05D005328 ORTHO05D006049 4.2e-78 296.2 460 48.3
Ciclev10015350m.g Citrus clementina HOM05D005328 ORTHO05D006049 1.2e-77 294.7 472 47.5
Potri.006G000200 Populus trichocarpa HOM05D005328 ORTHO05D006049 3.6e-77 293.1 474 55.3
Atru.chr1.2204 Acer truncatum HOM05D005328 ORTHO05D006049 4.7e-77 292.7 509 45.4
Lj6g0010372 Lotus japonicus HOM05D005328 ORTHO05D006049 4.7e-77 292.7 470 46.4
Migut.M01485 Erythranthe guttata HOM05D005328 ORTHO05D006049 1.0e-76 291.6 460 51.1
Duzib151G0457 Durio zibethinus HOM05D005328 ORTHO05D006049 1.4e-76 291.2 461 46.2
THA.LOC104798630 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 8.8e-76 288.5 243 72.4
CDE03G0050 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 1.5e-75 287.7 455 52.3
SGA_v2.0_scaffold7G03648 Striga asiatica HOM05D005328 ORTHO05D006049 1.5e-75 287.7 452 46.2
vmacro03583 Vaccinium macrocarpon HOM05D005328 ORTHO05D006049 4.4e-75 286.2 460 45.0
Glyma.15G123900 Glycine max HOM05D005328 ORTHO05D006049 9.7e-75 285.0 500 43.6
Sopen02g029040 Solanum pennellii HOM05D005328 ORTHO05D006049 2.8e-74 283.5 449 46.3
Oeu016925.1 Olea europaea HOM05D005328 ORTHO05D006049 3.7e-74 283.1 475 49.7
HanXRQChr17g0558521 Helianthus annuus HOM05D005328 ORTHO05D006049 4.8e-74 282.7 448 49.8
Solyc02g084340.3 Solanum lycopersicum HOM05D005328 ORTHO05D006049 1.8e-73 280.8 472 51.1
Lsat_1_v5_gn_4_65161 Lactuca sativa HOM05D005328 ORTHO05D006049 4.1e-73 279.6 453 46.4
HPP92_007484 Vanilla planifolia HOM05D005328 ORTHO05D006049 2.7e-72 276.9 449 45.9
Aqoxy6G01137 Aquilegia oxysepala HOM05D005328 ORTHO05D006049 1.0e-71 275.0 570 40.0
Ah.07g207330 Amaranthus hybridus HOM05D005328 ORTHO05D002024 1.3e-71 274.6 558 48.4
Nitab4.5_0002880g0010 Nicotiana tabacum HOM05D005328 ORTHO05D006049 2.2e-71 273.9 451 50.6
AUR62021212 Chenopodium quinoa HOM05D005328 ORTHO05D006049 1.5e-70 271.2 449 51.0
Ca_00786_v3 Cicer arietinum L. HOM05D005328 ORTHO05D006049 1.5e-70 271.2 449 52.3
Ca_11373_v3 Cicer arietinum L. HOM05D005328 ORTHO05D006049 1.5e-70 271.2 449 52.3
Peaxi162Scf00083g00091 Petunia axillaris HOM05D005328 ORTHO05D006049 3.2e-70 270.0 451 55.0
TPR.G10498 Trifolium pratense HOM05D005328 ORTHO05D006049 4.2e-70 269.6 475 49.1
TAR626G1462 Trochodendron aralioides HOM05D005328 ORTHO05D006049 4.2e-70 269.6 458 53.1
unitig_748.g7855 Utricularia gibba HOM05D005328 ORTHO05D006049 7.2e-70 268.9 471 45.0
arahy.Tifrunner.gnm1.ann1.B05UD4 Arachis hypogaea HOM05D005328 ORTHO05D006049 4.7e-69 266.2 475 51.2
Medtr2g028200 Medicago truncatula HOM05D005328 ORTHO05D006049 6.8e-68 262.3 516 50.8
Sabra06G0000700 Salix brachista HOM05D005328 ORTHO05D006049 7.5e-67 258.8 469 49.9
Sed0006700 Sechium edule HOM05D005328 ORTHO05D006049 7.5e-67 258.8 510 50.4
CiPaw.10G085200 Carya illinoinensis HOM05D005328 ORTHO05D006049 1.7e-66 257.7 466 56.2
Lalb_Chr15g0088491 Lupinus albus HOM05D005328 ORTHO05D006049 1.1e-65 255.0 508 41.7
EL10Ac3g05669 Beta vulgaris HOM05D005328 ORTHO05D006049 1.8e-65 254.2 498 45.6
QL05p066147 Quercus lobata HOM05D005328 ORTHO05D006049 2.4e-65 253.8 477 43.8
MD04G1014200 Malus domestica HOM05D005328 ORTHO05D006049 5.4e-65 252.7 533 49.2
PSO017G7149 Papaver somniferum HOM05D005328 ORTHO05D006049 2.7e-64 250.4 515 49.1
arahy.Tifrunner.gnm1.ann1.QMQM64 Arachis hypogaea HOM05D005328 ORTHO05D006049 2.9e-63 246.9 546 44.9
Os08g0500200 Oryza sativa ssp. japonica HOM05D005328 ORTHO05D006049 6.6e-63 245.7 525 47.6
GSVIVG01018754001 Vitis vinifera HOM05D005328 ORTHO05D006049 1.9e-62 244.2 581 44.2
FAN07G1972 Fragaria x ananassa HOM05D005328 ORTHO05D006049 2.5e-62 243.8 605 43.5
Psat1g170800 Pisum sativum HOM05D005328 ORTHO05D006049 7.2e-62 242.3 490 50.4
FAN12G3626 Fragaria x ananassa HOM05D005328 ORTHO05D006049 3.6e-61 240.0 624 40.7
FAN17G2578 Fragaria x ananassa HOM05D005328 ORTHO05D006049 4.7e-61 239.6 591 44.3
FvH4_4g13451 Fragaria vesca HOM05D005328 ORTHO05D006049 6.1e-61 239.2 624 40.5
PSO170G6444 Papaver somniferum HOM05D005328 ORTHO05D006049 1.2e-59 235.0 564 46.8
FAN22G2230 Fragaria x ananassa HOM05D005328 ORTHO05D006049 3.4e-59 233.4 623 43.0
SalBow8G1780 Salvia bowleyana HOM05D005328 ORTHO05D006049 2.8e-58 230.3 523 48.2
MELO3C017635.2 Cucumis melo HOM05D005328 ORTHO05D006049 1.1e-57 228.4 469 40.7
RcHm_v2.0_Chr4g0414011 Rosa chinensis HOM05D005328 ORTHO05D006049 3.2e-57 226.9 528 48.5
Glyma.09G018000 Glycine max HOM05D005328 ORTHO05D006049 9.2e-57 225.3 577 36.2
Cc09_g00040 Coffea canephora HOM05D005328 ORTHO05D006049 1.2e-56 224.9 569 36.6
Prupe.1G161200 Prunus persica HOM05D005328 ORTHO05D006049 1.6e-56 224.6 601 43.8
ClCG07G017100 Citrullus lanatus HOM05D005328 ORTHO05D006049 1.3e-55 221.5 462 39.4
DCAR_022839 Daucus carota HOM05D005328 ORTHO05D006049 2.9e-55 220.3 167 72.5
PGSC0003DMG400003630 Solanum tuberosum HOM05D005328 ORTHO05D006049 2.9e-55 220.3 623 41.1
CsaV3_4G004310 Cucumis sativus L. HOM05D005328 ORTHO05D006049 8.6e-55 218.8 462 40.3
SMO143G0138 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 3.4e-51 206.8 450 46.2
SEGI_06923 Sequoiadendron giganteum HOM05D005328 ORTHO05D006049 7.5e-51 205.7 626 34.0
AagrBONN_evm.TU.Sc2ySwM_228.5016 Anthoceros agrestis HOM05D005328 ORTHO05D006049 1.2e-48 198.4 224 55.8
Zm00001eb034090 Zea mays HOM05D005328 ORTHO05D006049 8.0e-45 185.7 512 44.7
BcaB02g08878 Brassica carinata HOM05D005328 ORTHO05D006049 1.2e-43 181.8 112 89.3
Carub.0004s2677 Capsella rubella HOM05D005328 ORTHO05D006049 3.0e-39 167.2 180 58.9
Mapoly0104s0032 Marchantia polymorpha HOM05D005328 ORTHO05D006049 7.3e-38 162.5 184 52.7
Pp3c3_9980 Physcomitrium patens HOM05D005328 ORTHO05D006049 1.2e-37 161.8 680 28.8
SMO114G0026 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 3.6e-37 160.2 420 35.2
AUR62016004 Chenopodium quinoa HOM05D005328 ORTHO05D006049 5.2e-36 156.4 373 43.7
Nn1g08402 Nelumbo nucifera HOM05D005328 ORTHO05D006049 3.4e-35 153.7 463 40.2
AT2G44195 Arabidopsis thaliana HOM05D005328 ORTHO05D006049 9.9e-35 152.1 153 59.5
CBR_g2953 Chara braunii HOM05D005328 ORTHO05D006049 9.9e-35 152.1 181 51.9
CDE06G1717 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 5.1e-31 139.8 85 82.4
ATR0751G077 Amborella trichopoda HOM05D005328 ORTHO05D006049 8.6e-31 139.0 117 67.5
QL05p065813 Quercus lobata HOM05D005328 ORTHO05D006049 1.9e-30 137.9 91 78.0
Prupe.1G162300 Prunus persica HOM05D005328 ORTHO05D006049 3.3e-30 137.1 211 46.9
AUR62016005 Chenopodium quinoa HOM05D005328 ORTHO05D006049 7.3e-30 136.0 85 81.2
ATR0751G111 Amborella trichopoda HOM05D005328 ORTHO05D006049 3.8e-26 123.6 363 43.5
AL4G43150 Arabidopsis lyrata HOM05D005328 ORTHO05D006049 5.1e-23 113.2 179 48.0
Prupe.1G161500 Prunus persica HOM05D005328 ORTHO05D006049 1.1e-22 112.1 130 53.1
SMO117G0350 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 3.3e-22 110.5 428 32.5
Zm00001eb097520 Zea mays HOM05D005328 ORTHO05D006049 7.3e-22 109.4 136 52.2
DCAR_022842 Daucus carota HOM05D005328 ORTHO05D006049 1.1e-20 105.5 152 52.0
CDE06G0152 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 2.4e-20 104.4 103 61.2
Cre01.g021400 Chlamydomonas reinhardtii HOM05D005328 ORTHO05D006049 2.0e-19 101.3 184 37.0
SMO246G0007 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 7.1e-17 92.8 63 73.0
PRCOL_00001794 Prasinoderma coloniale HOM05D005328 ORTHO05D006049 2.1e-16 91.3 180 35.0
SMO117G0022 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 4.6e-16 90.1 127 45.7
TAR371G0561 Trochodendron aralioides HOM05D005328 ORTHO05D006049 1.3e-15 88.6 97 55.7
SMO117G0182 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 5.1e-15 86.7 100 49.0
SMO117G0245 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 9.6e-14 82.4 91 48.4
VMungo1383G0559 Vigna mungo HOM05D005328 ORTHO05D006049 1.3e-13 82.0 53 77.4
BcaB05g23360 Brassica carinata HOM05D000598 ORTHO05D006049 8.4e-10 69.3 48 75.0
Sabra16G0007800 Salix brachista HOM05D000040 ORTHO05D001305 5.4e-09 66.6 107 41.1
Haze_07067 Corylus avellana HOM05D005328 ORTHO05D006049 9.3e-09 65.9 144 36.1
Actinidia26768 Actinidia chinensis HOM05D005328 ORTHO05D006049 2.7e-08 64.3 90 44.4


User provided reference genes

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