Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p86610 Brassica napus HOM05D002159 ORTHO05D033708 1.3e-39 166.0 87 100.0
BolC3t20957H Brassica oleracea HOM05D002159 ORTHO05D033708 3.2e-38 161.4 87 98.9
A03p61960 Brassica napus HOM05D002159 ORTHO05D007297 1.3e-20 102.8 92 69.6
BraA03t15236Z Brassica rapa HOM05D002159 ORTHO05D007297 1.3e-20 102.8 92 69.6
Thhalv10025502m.g Eutrema salsugineum HOM05D002159 ORTHO05D007297 1.3e-20 102.8 92 69.6
AL7G18160 Arabidopsis lyrata HOM05D002159 ORTHO05D007297 1.7e-20 102.4 92 69.6
AT4G33410 Arabidopsis thaliana HOM05D002159 ORTHO05D007297 1.7e-20 102.4 92 69.6
BcaC09g52153 Brassica carinata HOM05D002159 ORTHO05D007297 3.9e-20 101.3 92 68.5
BcaNung02170 Brassica carinata HOM05D002159 ORTHO05D007297 3.9e-20 101.3 92 69.6
C01p05280 Brassica napus HOM05D002159 ORTHO05D007297 3.9e-20 101.3 92 68.5
C07p59620 Brassica napus HOM05D002159 ORTHO05D007297 3.9e-20 101.3 92 69.6
BolC1t00507H Brassica oleracea HOM05D002159 ORTHO05D007297 3.9e-20 101.3 92 68.5
BolC7t46407H Brassica oleracea HOM05D002159 ORTHO05D007297 3.9e-20 101.3 92 69.6
BraA01t00470Z Brassica rapa HOM05D002159 ORTHO05D007297 3.9e-20 101.3 92 68.5
CARHR241460 Cardamine hirsuta HOM05D002159 ORTHO05D007297 3.9e-20 101.3 92 69.6
Sp7g31110 Schrenkiella parvula HOM05D002159 ORTHO05D007297 3.9e-20 101.3 92 68.5
BcaB03g12799 Brassica carinata HOM05D002159 ORTHO05D007297 5.1e-20 100.9 92 67.4
A01p04880 Brassica napus HOM05D002159 ORTHO05D007297 5.1e-20 100.9 92 68.5
Carub.0007s0708 Capsella rubella HOM05D002159 ORTHO05D007297 6.6e-20 100.5 92 68.5
Aa31LG11G8910 Aethionema arabicum HOM05D002159 ORTHO05D007297 1.6e-18 95.9 92 67.4
Phvul.007G071800 Phaseolus vulgaris HOM05D002159 ORTHO05D007297 2.8e-18 95.1 92 64.1
VMungo0720G1061 Vigna mungo HOM05D002159 ORTHO05D007297 2.8e-18 95.1 92 63.0
arahy.Tifrunner.gnm1.ann1.D3UWCH Arachis hypogaea HOM05D002159 ORTHO05D007297 6.2e-18 94.0 92 63.0
arahy.Tifrunner.gnm1.ann1.UN08B9 Arachis hypogaea HOM05D002159 ORTHO05D007297 6.2e-18 94.0 92 63.0
Lj5g0012518 Lotus japonicus HOM05D002159 ORTHO05D007297 8.1e-18 93.6 92 63.0
THA.LOC104808314 Tarenaya hassleriana HOM05D002159 ORTHO05D007297 8.1e-18 93.6 92 65.2
Atru.chr1.431 Acer truncatum HOM05D002159 ORTHO05D007297 1.1e-17 93.2 92 62.0
Psat6g198120 Pisum sativum HOM05D002159 ORTHO05D007297 1.1e-17 93.2 92 60.9
Medtr1g100980 Medicago truncatula HOM05D002159 ORTHO05D007297 1.4e-17 92.8 92 63.0
Cpa.g.sc107.68 Carica papaya HOM05D002159 ORTHO05D007297 1.8e-17 92.4 92 63.0
Potri.015G145600 Populus trichocarpa HOM05D002159 ORTHO05D007297 1.8e-17 92.4 92 62.0
Sabra12G0107100 Salix brachista HOM05D002159 ORTHO05D007297 1.8e-17 92.4 92 63.0
Ca_10747_v3 Cicer arietinum L. HOM05D002159 ORTHO05D007297 2.4e-17 92.0 92 62.0
Glyma.10G234200 Glycine max HOM05D002159 ORTHO05D007297 3.1e-17 91.7 92 62.0
Glyma.20G160100 Glycine max HOM05D002159 ORTHO05D007297 3.1e-17 91.7 92 62.0
Gohir.A12G256800 Gossypium hirsutum HOM05D002159 ORTHO05D007297 3.1e-17 91.7 92 60.9
Gohir.D12G258100 Gossypium hirsutum HOM05D002159 ORTHO05D007297 3.1e-17 91.7 92 60.9
Gorai.008G276400 Gossypium raimondii HOM05D002159 ORTHO05D007297 3.1e-17 91.7 92 60.9
Sed0012622 Sechium edule HOM05D002159 ORTHO05D007297 5.2e-17 90.9 92 59.8
Duzib205G0735 Durio zibethinus HOM05D002159 ORTHO05D007297 6.8e-17 90.5 92 60.9
Thecc.03G178900 Theobroma cacao HOM05D002159 ORTHO05D007297 6.8e-17 90.5 92 60.9
Potri.012G142400 Populus trichocarpa HOM05D002159 ORTHO05D007297 8.9e-17 90.1 92 63.0
Sed0003382 Sechium edule HOM05D002159 ORTHO05D007297 1.2e-16 89.7 92 59.8
Duzib068G1421 Durio zibethinus HOM05D002159 ORTHO05D007297 1.5e-16 89.4 92 59.8
Eucgr.A02776 Eucalyptus grandis HOM05D002159 ORTHO05D007297 1.5e-16 89.4 92 58.7
Manes.06G149100 Manihot esculenta HOM05D002159 ORTHO05D007297 1.5e-16 89.4 92 62.0
Prupe.2G296100 Prunus persica HOM05D002159 ORTHO05D007297 2.0e-16 89.0 91 60.4
TWI14G1085 Tripterygium wilfordii HOM05D002159 ORTHO05D007297 2.0e-16 89.0 92 60.9
Duzib084G0849 Durio zibethinus HOM05D002159 ORTHO05D007297 2.6e-16 88.6 92 59.8
Lalb_Chr02g0141101 Lupinus albus HOM05D002159 ORTHO05D007297 2.6e-16 88.6 92 58.7
TWI23G1271 Tripterygium wilfordii HOM05D002159 ORTHO05D007297 3.4e-16 88.2 92 57.6
CANSAT21G2035 Cannabis sativa HOM05D002159 ORTHO05D007297 4.4e-16 87.8 92 60.9
Gorai.007G011300 Gossypium raimondii HOM05D002159 ORTHO05D007297 4.4e-16 87.8 92 58.7
Lalb_Chr21g0305081 Lupinus albus HOM05D002159 ORTHO05D007297 4.4e-16 87.8 86 59.3
RcHm_v2.0_Chr1g0377661 Rosa chinensis HOM05D002159 ORTHO05D007297 4.4e-16 87.8 92 59.8
MD07G1272800 Malus domestica HOM05D002159 ORTHO05D007297 5.8e-16 87.4 91 58.2
Cfa023191 Carpinus fangiana HOM05D002159 ORTHO05D005625 7.6e-16 87.0 92 60.9
TPR.G26968 Trifolium pratense HOM05D002159 ORTHO05D007297 7.6e-16 87.0 92 59.8
PGR042G1227 Punica granatum HOM05D002159 ORTHO05D007297 9.9e-16 86.7 92 59.8
Ciclev10005207m.g Citrus clementina HOM05D002159 ORTHO05D007297 1.3e-15 86.3 92 57.6
FAN10G0587 Fragaria x ananassa HOM05D002159 ORTHO05D007297 1.3e-15 86.3 92 59.8
Hma1.2p1_2503F.1_g323401 Hydrangea macrophylla HOM05D002159 ORTHO05D007297 1.3e-15 86.3 92 59.8
Hma1.2p1_2710F.1_g327270 Hydrangea macrophylla HOM05D002159 ORTHO05D007297 1.3e-15 86.3 92 59.8
MELO3C006918.2 Cucumis melo HOM05D002159 ORTHO05D007297 1.7e-15 85.9 92 59.8
CsaV3_3G017210 Cucumis sativus L. HOM05D002159 ORTHO05D007297 1.7e-15 85.9 92 59.8
Gohir.D11G009800 Gossypium hirsutum HOM05D002159 ORTHO05D007297 1.7e-15 85.9 92 57.6
Sc13g0008810 Simmondsia chinensis HOM05D002159 ORTHO05D007297 1.7e-15 85.9 92 57.6
CiPaw.03G108000 Carya illinoinensis HOM05D002159 ORTHO05D007297 2.2e-15 85.5 92 58.7
ClCG05G008130 Citrullus lanatus HOM05D002159 ORTHO05D007297 2.2e-15 85.5 92 59.8
FAN01G0872 Fragaria x ananassa HOM05D002159 ORTHO05D005625 2.9e-15 85.1 92 58.7
FAN03G0284 Fragaria x ananassa HOM05D002159 ORTHO05D007297 2.9e-15 85.1 92 58.7
FAN03G0857 Fragaria x ananassa HOM05D002159 ORTHO05D005625 2.9e-15 85.1 92 58.7
FAN06G3579 Fragaria x ananassa HOM05D002159 ORTHO05D005625 2.9e-15 85.1 92 58.7
FAN06G4426 Fragaria x ananassa HOM05D002159 ORTHO05D005625 2.9e-15 85.1 92 58.7
FAN10G0118 Fragaria x ananassa HOM05D002159 ORTHO05D005625 2.9e-15 85.1 92 58.7
GSVIVG01028920001 Vitis vinifera HOM05D002159 ORTHO05D007297 3.8e-15 84.7 92 59.8
CiPaw.04G072000 Carya illinoinensis HOM05D002159 ORTHO05D007297 4.9e-15 84.3 92 58.7
MD01G1203500 Malus domestica HOM05D002159 ORTHO05D007297 6.4e-15 84.0 91 57.1
COL.COLO4_25865 Corchorus olitorius HOM05D002159 ORTHO05D007297 8.4e-15 83.6 92 56.5
ATR0680G136 Amborella trichopoda HOM05D002159 ORTHO05D007297 1.1e-14 83.2 92 58.7
Dinv28422 Davidia involucrata HOM05D002159 ORTHO05D007297 1.4e-14 82.8 92 57.6
QL09p013821 Quercus lobata HOM05D002159 ORTHO05D007297 1.4e-14 82.8 92 60.9
Hund04760 Selenicereus undatus HOM05D002159 ORTHO05D007297 1.9e-14 82.4 92 56.5
TAR629G2977 Trochodendron aralioides HOM05D002159 ORTHO05D007297 1.9e-14 82.4 91 56.0
MBI18_g21568_MAGBIO Magnolia biondii HOM05D002159 ORTHO05D007297 2.4e-14 82.0 92 58.7
EL10Ac3g05615 Beta vulgaris HOM05D002159 ORTHO05D007297 3.2e-14 81.6 92 55.4
Nn1g01518 Nelumbo nucifera HOM05D002159 ORTHO05D007297 3.2e-14 81.6 92 58.7
Cc02_g02810 Coffea canephora HOM05D002159 ORTHO05D007297 4.2e-14 81.3 92 57.6
Rhsim09G0198600 Rhododendron simsii HOM05D002159 ORTHO05D007297 4.2e-14 81.3 92 58.7
Lj1C1000G16 Lonicera japonica HOM05D002159 ORTHO05D007297 9.2e-14 80.1 92 54.3
TAR375G0726 Trochodendron aralioides HOM05D002159 ORTHO05D007297 9.2e-14 80.1 92 57.6
SEGI_25051 Sequoiadendron giganteum HOM05D002159 ORTHO05D007297 1.6e-13 79.3 92 55.4
Actinidia03126 Actinidia chinensis HOM05D002159 ORTHO05D007297 2.1e-13 79.0 92 54.3
Lj8C239T3 Lonicera japonica HOM05D002159 ORTHO05D007297 2.1e-13 79.0 92 52.2
Nn6g33443 Nelumbo nucifera HOM05D002159 ORTHO05D007297 2.1e-13 79.0 92 55.4
Nitab4.5_0000084g0010 Nicotiana tabacum HOM05D002159 ORTHO05D007297 2.7e-13 78.6 98 52.0
vmacro09831 Vaccinium macrocarpon HOM05D002159 ORTHO05D007297 2.7e-13 78.6 92 55.4
Peaxi162Scf00444g00616 Petunia axillaris HOM05D002159 ORTHO05D007297 3.5e-13 78.2 98 53.1
Solyc03g025550.3 Solanum lycopersicum HOM05D002159 ORTHO05D007297 3.5e-13 78.2 97 53.6
CSS0043865 Camellia sinensis var. sinensis HOM05D002159 ORTHO05D007297 4.6e-13 77.8 93 57.0
HanXRQChr04g0099211 Helianthus annuus HOM05D002159 ORTHO05D007297 4.6e-13 77.8 92 53.3
Sopen03g004390 Solanum pennellii HOM05D002159 ORTHO05D007297 4.6e-13 77.8 97 53.6
Actinidia31826 Actinidia chinensis HOM05D002159 ORTHO05D007297 1.3e-12 76.3 92 54.3
Nitab4.5_0004439g0170 Nicotiana tabacum HOM05D002159 ORTHO05D007297 1.3e-12 76.3 98 51.0
MSTRG.27106 Avicennia marina HOM05D002159 ORTHO05D007297 2.3e-12 75.5 92 52.2
PGSC0003DMG400015784 Solanum tuberosum HOM05D002159 ORTHO05D007297 2.3e-12 75.5 97 53.6
Aqoxy7G00334 Aquilegia oxysepala HOM05D002159 ORTHO05D007297 3.0e-12 75.1 92 51.1
PSO782G4503 Papaver somniferum HOM05D002159 ORTHO05D007297 3.9e-12 74.7 86 58.1
PSO478G4076 Papaver somniferum HOM05D002159 ORTHO05D007297 8.7e-12 73.6 86 57.0
SalBow2G0905 Salvia bowleyana HOM05D002159 ORTHO05D007297 8.7e-12 73.6 92 52.2
DCAR_010298 Daucus carota HOM05D002159 ORTHO05D007297 1.1e-11 73.2 92 53.3
CDE04G3161 Ceratophyllum demersum HOM05D002159 ORTHO05D007297 9.6e-11 70.1 85 54.1
AUR62015963 Chenopodium quinoa HOM05D002159 ORTHO05D007297 9.6e-11 70.1 92 53.3
Lsat_1_v5_gn_9_55320 Lactuca sativa HOM05D002159 ORTHO05D007297 1.3e-10 69.7 92 53.3
Mapoly0019s0103 Marchantia polymorpha HOM05D002159 ORTHO05D007297 1.6e-10 69.3 94 52.1
unitig_37.g11965 Utricularia gibba HOM05D002159 ORTHO05D007297 2.1e-10 68.9 92 50.0
Migut.F01110 Erythranthe guttata HOM05D002159 ORTHO05D007297 3.6e-10 68.2 93 53.8
CAN.G1175.1 Capsicum annuum HOM05D002159 ORTHO05D007297 4.8e-10 67.8 98 48.0
Haze_13670 Corylus avellana HOM05D002159 ORTHO05D007297 4.8e-10 67.8 64 59.4
CAN.G307.29 Capsicum annuum HOM05D002159 ORTHO05D007297 1.4e-09 66.2 97 46.4
Oeu061650.1 Olea europaea HOM05D002159 ORTHO05D007297 1.8e-09 65.9 92 46.7
COL.COLO4_02776 Corchorus olitorius HOM05D002159 ORTHO05D007297 2.4e-09 65.5 65 58.5
QL09p013806 Quercus lobata HOM05D000071 ORTHO05D000029 2.4e-09 65.5 109 46.8
Os10g0393100 Oryza sativa ssp. japonica HOM05D002159 ORTHO05D007297 6.9e-09 63.9 86 51.2
Zm00001eb039340 Zea mays HOM05D002159 ORTHO05D007297 6.9e-09 63.9 87 55.2
CBR_g26327 Chara braunii HOM05D002159 ORTHO05D007297 1.2e-08 63.2 92 54.3
HPP92_014727 Vanilla planifolia HOM05D002159 ORTHO05D007297 1.5e-08 62.8 86 50.0
Zm00001eb175980 Zea mays HOM05D002159 ORTHO05D007297 1.5e-08 62.8 86 54.7
MBI13_g20252_MAGBIO Magnolia biondii HOM05D002159 ORTHO05D033708 2.6e-08 62.0 64 57.8
SMO329G0052 Selaginella moellendorffii HOM05D002159 ORTHO05D007297 3.4e-08 61.6 92 46.7
MBI09_g27004_MAGBIO Magnolia biondii HOM05D000041 ORTHO05D000061 7.6e-08 60.5 65 53.8
TPR.G1416 Trifolium pratense HOM05D002159 ORTHO05D007297 1.7e-07 59.3 62 53.2
Pp3c26_4810 Physcomitrium patens HOM05D002159 ORTHO05D007297 1.1e-06 56.6 87 42.5


User provided reference genes

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