Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p82900 Brassica napus HOM05D002138 ORTHO05D002106 2.7e-69 265.4 150 100.0
BolC3t20573H Brassica oleracea HOM05D002138 ORTHO05D002106 1.2e-58 229.9 139 97.1
BcaC01g00667 Brassica carinata HOM05D002138 ORTHO05D002106 1.4e-49 199.9 131 79.4
A08p14830 Brassica napus HOM05D002138 ORTHO05D002106 1.6e-37 159.8 125 80.8
BolC7t45586H Brassica oleracea HOM05D002138 ORTHO05D002106 3.3e-35 152.1 142 64.8
BcaB03g11670 Brassica carinata HOM05D002138 ORTHO05D002106 2.9e-31 139.0 120 80.0
BcaC09g51342 Brassica carinata HOM05D002138 ORTHO05D002106 1.1e-30 137.1 129 76.0
C01p14370 Brassica napus HOM05D002138 ORTHO05D002106 1.1e-30 137.1 129 76.0
BolC1t01395H Brassica oleracea HOM05D002138 ORTHO05D002106 1.1e-30 137.1 129 76.0
BraA08t33467Z Brassica rapa HOM05D002138 ORTHO05D002106 1.5e-27 126.7 168 55.4
Aa31LG6G2770 Aethionema arabicum HOM05D002138 ORTHO05D002106 2.5e-27 125.9 129 74.4
Thhalv10026533m.g Eutrema salsugineum HOM05D002138 ORTHO05D002106 2.1e-26 122.9 129 73.6
Cpa.g.sc832.2 Carica papaya HOM05D002138 ORTHO05D002106 2.5e-22 109.4 128 68.0
HanXRQChr12g0358431 Helianthus annuus HOM05D002138 ORTHO05D002106 9.3e-22 107.5 126 65.1
Sp7g18750 Schrenkiella parvula HOM05D002138 ORTHO05D002106 1.3e-20 103.6 175 52.0
AL7G33510 Arabidopsis lyrata HOM05D002138 ORTHO05D002106 2.3e-20 102.8 175 51.4
BraA03t14321Z Brassica rapa HOM05D002138 ORTHO05D002106 1.1e-19 100.5 178 50.6
Oeu063150.1 Olea europaea HOM05D002138 ORTHO05D002106 3.3e-19 99.0 127 56.7
A03p52420 Brassica napus HOM05D002138 ORTHO05D002106 7.4e-19 97.8 177 50.3
Psat7g060840 Pisum sativum HOM05D002138 ORTHO05D002106 9.7e-19 97.4 128 62.5
TAR627G0773 Trochodendron aralioides HOM05D002138 ORTHO05D002106 1.3e-18 97.1 128 64.1
AL7G46100 Arabidopsis lyrata HOM05D002138 ORTHO05D002106 2.2e-18 96.3 72 79.2
C07p50880 Brassica napus HOM05D002138 ORTHO05D002106 2.8e-18 95.9 179 50.3
A01p12080 Brassica napus HOM05D002138 ORTHO05D002106 4.8e-18 95.1 73 80.8
BraA01t01151Z Brassica rapa HOM05D002138 ORTHO05D002106 4.8e-18 95.1 73 80.8
CSS0019083 Camellia sinensis var. sinensis HOM05D002138 ORTHO05D002106 4.8e-18 95.1 114 65.8
Carub.0007s2078 Capsella rubella HOM05D002138 ORTHO05D002106 4.8e-18 95.1 178 50.0
ECA234G3665 Erigeron canadensis HOM05D002895 ORTHO05D003286 8.2e-18 94.4 124 58.1
AT4G20380 Arabidopsis thaliana HOM05D002138 ORTHO05D002106 2.4e-17 92.8 175 50.3
CARHR227210 Cardamine hirsuta HOM05D002138 ORTHO05D002106 4.1e-17 92.0 169 49.1
MELO3C007039.2 Cucumis melo HOM05D002138 ORTHO05D002106 6.9e-17 91.3 128 60.9
Lj4g0018656 Lotus japonicus HOM05D002138 ORTHO05D002106 9.0e-17 90.9 163 49.1
Sabra16G0299000 Salix brachista HOM05D002138 ORTHO05D002106 9.0e-17 90.9 127 61.4
FAN21G3756 Fragaria x ananassa HOM05D002138 ORTHO05D002106 2.0e-16 89.7 123 61.0
vmacro10995 Vaccinium macrocarpon HOM05D002138 ORTHO05D002106 2.0e-16 89.7 128 61.7
Phvul.002G252000 Phaseolus vulgaris HOM05D002138 ORTHO05D002106 4.5e-16 88.6 164 47.0
TPR.G6267 Trifolium pratense HOM05D002138 ORTHO05D002106 4.5e-16 88.6 164 48.2
Thhalv10001047m.g Eutrema salsugineum HOM05D002138 ORTHO05D002106 5.9e-16 88.2 167 50.3
VMungo0251G0598 Vigna mungo HOM05D002138 ORTHO05D002106 5.9e-16 88.2 164 47.6
THA.LOC104812929 Tarenaya hassleriana HOM05D002138 ORTHO05D002106 2.2e-15 86.3 173 46.8
Sabra16G0300900 Salix brachista HOM05D002138 ORTHO05D002106 1.1e-14 84.0 101 56.4
arahy.Tifrunner.gnm1.ann1.0BUM6B Arachis hypogaea HOM05D002138 ORTHO05D002106 2.5e-14 82.8 72 66.7
arahy.Tifrunner.gnm1.ann1.0IDF8B Arachis hypogaea HOM05D002138 ORTHO05D002106 2.5e-14 82.8 72 66.7
COL.COLO4_26865 Corchorus olitorius HOM05D002330 ORTHO05D002411 3.2e-14 82.4 164 48.8
Medtr8g089310 Medicago truncatula HOM05D002138 ORTHO05D002106 9.3e-14 80.9 164 45.7
THA.LOC104812036 Tarenaya hassleriana HOM05D002138 ORTHO05D002106 9.3e-14 80.9 170 47.6
TPR.G625 Trifolium pratense HOM05D002138 ORTHO05D002106 9.3e-14 80.9 99 53.5
Ciclev10016959m.g Citrus clementina HOM05D002138 ORTHO05D002106 1.2e-13 80.5 164 47.6
Atru.chr10.656 Acer truncatum HOM05D002330 ORTHO05D002411 1.6e-13 80.1 164 48.8
Ca_17809_v3 Cicer arietinum L. HOM05D002138 ORTHO05D002106 2.1e-13 79.7 72 65.3
Gohir.A10G004900 Gossypium hirsutum HOM05D002138 ORTHO05D002106 2.7e-13 79.3 164 47.6
Gohir.D10G004900 Gossypium hirsutum HOM05D002138 ORTHO05D002106 2.7e-13 79.3 164 47.6
Duzib235G1231 Durio zibethinus HOM05D002330 ORTHO05D002411 3.6e-13 79.0 164 47.0
TAR629G1185 Trochodendron aralioides HOM05D002138 ORTHO05D002106 3.6e-13 79.0 164 47.0
Glyma.08G129400 Glycine max HOM05D002138 ORTHO05D002106 4.6e-13 78.6 71 66.2
Oeu052706.2 Olea europaea HOM05D002138 ORTHO05D002106 4.6e-13 78.6 124 54.0
Glyma.U031408 Glycine max HOM05D002138 ORTHO05D002106 6.1e-13 78.2 71 64.8
SGA_v2.0_scaffold69G23248 Striga asiatica HOM05D002138 ORTHO05D002106 7.9e-13 77.8 163 45.4
Glyma.09G083500 Glycine max HOM05D002138 ORTHO05D002106 1.0e-12 77.4 164 45.1
MSTRG.6246 Avicennia marina HOM05D002138 ORTHO05D002106 1.8e-12 76.6 163 45.4
Glyma.15G192000 Glycine max HOM05D002138 ORTHO05D002106 1.8e-12 76.6 168 46.4
Lalb_Chr12g0204321 Lupinus albus HOM05D002138 ORTHO05D002106 1.8e-12 76.6 164 43.9
Potri.001G442400 Populus trichocarpa HOM05D002138 ORTHO05D002106 1.8e-12 76.6 164 47.6
Aqoxy1G01592 Aquilegia oxysepala HOM05D002138 ORTHO05D002106 2.3e-12 76.3 72 65.3
QL05p063069 Quercus lobata HOM05D002138 ORTHO05D002106 2.3e-12 76.3 110 60.9
Dinv11971 Davidia involucrata HOM05D002138 ORTHO05D002106 3.9e-12 75.5 165 44.8
Eucgr.A00512 Eucalyptus grandis HOM05D002138 ORTHO05D002106 3.9e-12 75.5 110 61.8
Gorai.011G005300 Gossypium raimondii HOM05D002138 ORTHO05D002106 3.9e-12 75.5 164 46.3
Lalb_Chr08g0233161 Lupinus albus HOM05D002138 ORTHO05D002106 5.1e-12 75.1 70 65.7
Nitab4.5_0001298g0030 Nicotiana tabacum HOM05D002138 ORTHO05D002106 8.8e-12 74.3 115 54.8
Nn7g37741 Nelumbo nucifera HOM05D002138 ORTHO05D002106 1.1e-11 73.9 166 44.0
Thecc.06G005100 Theobroma cacao HOM05D002138 ORTHO05D002106 1.1e-11 73.9 164 47.0
TWI63G1074 Tripterygium wilfordii HOM05D002138 ORTHO05D002106 1.1e-11 73.9 164 45.1
CANSAT35G1191 Cannabis sativa HOM05D002138 ORTHO05D002106 1.5e-11 73.6 161 46.6
Migut.J01511 Erythranthe guttata HOM05D002138 ORTHO05D002106 1.9e-11 73.2 164 43.9
Lsat_1_v5_gn_5_84081 Lactuca sativa HOM05D002138 ORTHO05D002106 1.9e-11 73.2 70 65.7
Manes.16G062400 Manihot esculenta HOM05D002138 ORTHO05D002106 2.5e-11 72.8 72 65.3
RhsimUnG0090000 Rhododendron simsii HOM05D002138 ORTHO05D002106 2.5e-11 72.8 112 59.8
Sp2g09350 Schrenkiella parvula HOM05D002138 ORTHO05D002106 4.3e-11 72.0 165 47.3
TAR626G1147 Trochodendron aralioides HOM05D002138 ORTHO05D002106 4.3e-11 72.0 71 64.8
Oeu009081.3 Olea europaea HOM05D002138 ORTHO05D002106 7.4e-11 71.2 82 56.1
Cc06_g12860 Coffea canephora HOM05D002138 ORTHO05D002106 1.3e-10 70.5 70 64.3
MD05G1263500 Malus domestica HOM05D002138 ORTHO05D002106 1.3e-10 70.5 162 44.4
Nitab4.5_0006863g0020 Nicotiana tabacum HOM05D002138 ORTHO05D002106 1.3e-10 70.5 157 45.2
Rhsim02G0167700 Rhododendron simsii HOM05D002138 ORTHO05D002106 1.3e-10 70.5 112 58.9
FAN16G0729 Fragaria x ananassa HOM05D000257 ORTHO05D009178 1.7e-10 70.1 110 61.8
Manes.03G069700 Manihot esculenta HOM05D002138 ORTHO05D002106 1.7e-10 70.1 165 44.8
Gohir.A06G202300 Gossypium hirsutum HOM05D002138 ORTHO05D002106 2.2e-10 69.7 72 63.9
Gohir.D06G219400 Gossypium hirsutum HOM05D002138 ORTHO05D002106 2.2e-10 69.7 72 63.9
Gorai.010G246900 Gossypium raimondii HOM05D002138 ORTHO05D002106 2.2e-10 69.7 72 63.9
SGA_v2.0_scaffold66G22446 Striga asiatica HOM05D004327 ORTHO05D005032 2.2e-10 69.7 125 43.2
Potri.011G154800 Populus trichocarpa HOM05D002138 ORTHO05D002106 3.7e-10 68.9 164 45.7
Aa31LG9G8650 Aethionema arabicum HOM05D002138 ORTHO05D002106 6.3e-10 68.2 171 42.1
BcaC06g34539 Brassica carinata HOM05D002138 ORTHO05D002106 6.3e-10 68.2 165 46.1
C07p27430 Brassica napus HOM05D002138 ORTHO05D002106 6.3e-10 68.2 165 46.1
BolC7t43273H Brassica oleracea HOM05D002138 ORTHO05D002106 6.3e-10 68.2 165 46.1
Lalb_Chr23g0276031 Lupinus albus HOM05D002138 ORTHO05D002106 1.4e-09 67.0 72 58.3
ATR1098G036 Amborella trichopoda HOM05D002138 ORTHO05D002106 1.8e-09 66.6 72 62.5
Prupe.4G102000 Prunus persica HOM05D002138 ORTHO05D002106 1.8e-09 66.6 72 65.3
EL10Ac8g19641 Beta vulgaris HOM05D002138 ORTHO05D002106 2.4e-09 66.2 166 42.2
CiPaw.09G149400 Carya illinoinensis HOM05D002138 ORTHO05D002106 3.1e-09 65.9 70 64.3
Sopen02g018840 Solanum pennellii HOM05D002138 ORTHO05D002106 3.1e-09 65.9 160 45.0
PGSC0003DMG400021196 Solanum tuberosum HOM05D002138 ORTHO05D002106 3.1e-09 65.9 160 45.0
MD10G1241200 Malus domestica HOM05D002138 ORTHO05D002106 9.1e-09 64.3 72 62.5
AUR62030152 Chenopodium quinoa HOM05D002138 ORTHO05D002106 1.2e-08 63.9 61 67.2
RcHm_v2.0_Chr5g0018361 Rosa chinensis HOM05D002138 ORTHO05D002106 1.5e-08 63.5 62 66.1
HanXRQChr03g0084531 Helianthus annuus HOM05D002138 ORTHO05D002106 2.0e-08 63.2 67 61.2
Solyc02g069720.3 Solanum lycopersicum HOM05D002138 ORTHO05D002106 2.6e-08 62.8 160 44.4
CiPaw.10G111300 Carya illinoinensis HOM05D002138 ORTHO05D002106 3.4e-08 62.4 113 56.6
Haze_05972 Corylus avellana HOM05D002138 ORTHO05D002106 3.4e-08 62.4 72 59.7
Lsat_1_v5_gn_8_68441 Lactuca sativa HOM05D002138 ORTHO05D002106 3.4e-08 62.4 160 42.5
AUR62002695 Chenopodium quinoa HOM05D002138 ORTHO05D002106 4.5e-08 62.0 61 65.6
Medtr2g047838 Medicago truncatula HOM05D002138 ORTHO05D002106 5.9e-08 61.6 68 60.3
Ca_02382_v3 Cicer arietinum L. HOM05D002138 ORTHO05D002106 7.7e-08 61.2 66 62.1
Psat1g019560 Pisum sativum HOM05D002138 ORTHO05D002106 7.7e-08 61.2 67 64.2
Sed0010270 Sechium edule HOM05D002138 ORTHO05D002106 7.7e-08 61.2 164 42.7
Ah.14g086340 Amaranthus hybridus HOM05D002227 ORTHO05D002337 1.0e-07 60.8 66 57.6
MSTRG.16312 Avicennia marina HOM05D002138 ORTHO05D002106 1.0e-07 60.8 107 53.3
Lalb_Chr07g0185671 Lupinus albus HOM05D002138 ORTHO05D002106 1.0e-07 60.8 53 60.4
MBI18_g28207_MAGBIO Magnolia biondii HOM05D002138 ORTHO05D002106 1.0e-07 60.8 72 59.7
CDE02G0016 Ceratophyllum demersum HOM05D002138 ORTHO05D002106 1.7e-07 60.1 74 60.8
unitig_60.g25492 Utricularia gibba HOM05D002138 ORTHO05D002106 1.7e-07 60.1 66 56.1
ClCG01G025450 Citrullus lanatus HOM05D002138 ORTHO05D002106 2.9e-07 59.3 164 42.7
CsaV3_6G052700 Cucumis sativus L. HOM05D002138 ORTHO05D002106 2.9e-07 59.3 164 42.7
Gohir.D05G111800 Gossypium hirsutum HOM05D002138 ORTHO05D002106 5.0e-07 58.5 61 63.9
Gorai.009G116000 Gossypium raimondii HOM05D002138 ORTHO05D002106 5.0e-07 58.5 61 63.9
SalBow7G0802 Salvia bowleyana HOM05D002138 ORTHO05D002106 6.5e-07 58.2 105 57.1
Sed0010165 Sechium edule HOM05D002330 ORTHO05D002411 8.5e-07 57.8 162 40.7
GSVIVG01037958001 Vitis vinifera HOM05D002138 ORTHO05D002106 8.5e-07 57.8 72 58.3
PGR083G1218 Punica granatum HOM05D002138 ORTHO05D002106 1.1e-06 57.4 67 59.7
HPP92_016666 Vanilla planifolia HOM05D002138 ORTHO05D002106 1.4e-06 57.0 100 57.0
MSTRG.14808 Avicennia marina HOM05D002138 ORTHO05D002106 2.5e-06 56.2 104 54.8
Lj2C338T15 Lonicera japonica HOM05D002138 ORTHO05D002106 2.5e-06 56.2 111 52.3
PSO675G6382 Papaver somniferum HOM05D002138 ORTHO05D002106 2.5e-06 56.2 62 61.3
HPP92_011023 Vanilla planifolia HOM05D002138 ORTHO05D002106 2.5e-06 56.2 69 52.2
Lsat_1_v5_gn_7_55201 Lactuca sativa HOM05D001519 ORTHO05D001403 4.2e-06 55.5 148 43.9
Zm00001eb050760 Zea mays HOM05D002138 ORTHO05D002106 4.2e-06 55.5 164 40.9
Hund21537 Selenicereus undatus HOM05D002138 ORTHO05D002106 5.5e-06 55.1 55 65.5
TWI15G0245 Tripterygium wilfordii HOM05D002138 ORTHO05D002106 7.2e-06 54.7 67 50.7
PSO541G1019 Papaver somniferum HOM05D002138 ORTHO05D002106 9.4e-06 54.3 60 55.0


User provided reference genes

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