Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p80620 Brassica napus HOM05D002485 ORTHO05D002629 1.4e-52 209.5 106 100.0
A08p21930 Brassica napus HOM05D002485 ORTHO05D002629 1.4e-28 129.8 71 93.0
BraA08t34145Z Brassica rapa HOM05D002485 ORTHO05D002629 1.4e-28 129.8 71 93.0
BcaB03g12407 Brassica carinata HOM05D002485 ORTHO05D002629 1.8e-28 129.4 71 91.5
BcaC01g00488 Brassica carinata HOM05D002485 ORTHO05D002629 1.8e-28 129.4 71 91.5
C03p80540 Brassica napus HOM05D002485 ORTHO05D002629 1.8e-28 129.4 71 91.5
BolC3t20298H Brassica oleracea HOM05D002485 ORTHO05D002629 1.8e-28 129.4 71 91.5
Carub.0007s1752 Capsella rubella HOM05D002485 ORTHO05D002629 2.0e-27 125.9 72 87.5
BolC3t20305H Brassica oleracea HOM05D002485 ORTHO05D002629 3.4e-27 125.2 63 100.0
CARHR230980 Cardamine hirsuta HOM05D002485 ORTHO05D002629 3.7e-26 121.7 72 84.7
BraA01t01433Z Brassica rapa HOM05D002485 ORTHO05D002629 4.9e-26 121.3 72 84.7
BcaC09g50970 Brassica carinata HOM05D002485 ORTHO05D002629 6.4e-26 120.9 71 85.9
BcaNung01070 Brassica carinata HOM05D002485 ORTHO05D002629 6.4e-26 120.9 71 85.9
A01p14920 Brassica napus HOM05D002485 ORTHO05D002629 6.4e-26 120.9 71 85.9
C01p18620 Brassica napus HOM05D002485 ORTHO05D002629 6.4e-26 120.9 71 85.9
BolC1t01790H Brassica oleracea HOM05D002485 ORTHO05D002629 6.4e-26 120.9 71 85.9
AL7G29750 Arabidopsis lyrata HOM05D002485 ORTHO05D002629 1.1e-25 120.2 72 83.3
Thhalv10026041m.g Eutrema salsugineum HOM05D002485 ORTHO05D002629 1.4e-25 119.8 72 84.7
Sp7g21540 Schrenkiella parvula HOM05D002485 ORTHO05D002629 1.9e-25 119.4 71 81.7
AT4G23620 Arabidopsis thaliana HOM05D002485 ORTHO05D002629 2.4e-25 119.0 72 81.9
THA.LOC104814787 Tarenaya hassleriana HOM05D002485 ORTHO05D002629 2.4e-25 119.0 72 80.6
Aa31LG6G6840 Aethionema arabicum HOM05D002485 ORTHO05D002629 5.4e-25 117.9 72 83.3
THA.LOC104806423 Tarenaya hassleriana HOM05D002485 ORTHO05D002629 2.0e-24 115.9 72 80.6
C03p80560 Brassica napus HOM05D002485 ORTHO05D002629 4.6e-24 114.8 69 85.5
Cpa.g.sc122.7 Carica papaya HOM05D002485 ORTHO05D002629 1.7e-23 112.8 89 67.4
BcaB05g23207 Brassica carinata HOM05D002485 ORTHO05D002629 2.3e-23 112.5 65 87.7
MELO3C009795.2 Cucumis melo HOM05D002485 ORTHO05D002629 2.3e-23 112.5 72 76.4
CsaV3_3G040630 Cucumis sativus L. HOM05D002485 ORTHO05D002629 2.3e-23 112.5 72 76.4
TWI15G0639 Tripterygium wilfordii HOM05D002485 ORTHO05D002629 3.9e-23 111.7 72 77.8
RcHm_v2.0_Chr4g0408271 Rosa chinensis HOM05D002485 ORTHO05D002629 1.5e-22 109.8 72 76.4
FAN22G2077 Fragaria x ananassa HOM05D002485 ORTHO05D002629 2.5e-22 109.0 72 76.4
Ciclev10021787m.g Citrus clementina HOM05D002485 ORTHO05D002629 3.3e-22 108.6 71 74.6
FAN17G0602 Fragaria x ananassa HOM05D002485 ORTHO05D002629 4.3e-22 108.2 72 75.0
FAN17G1958 Fragaria x ananassa HOM05D002485 ORTHO05D002629 4.3e-22 108.2 72 75.0
FvH4_4g11490 Fragaria vesca HOM05D002485 ORTHO05D002629 7.3e-22 107.5 72 75.0
Glyma.16G036900 Glycine max HOM05D002485 ORTHO05D002629 7.3e-22 107.5 72 73.6
Peaxi162Scf00515g00128 Petunia axillaris HOM05D002485 ORTHO05D002629 9.5e-22 107.1 71 74.6
PGR031G0557 Punica granatum HOM05D002485 ORTHO05D002629 9.5e-22 107.1 72 69.4
vmacro13985 Vaccinium macrocarpon HOM05D002485 ORTHO05D002629 9.5e-22 107.1 72 72.2
Duzib068G0591 Durio zibethinus HOM05D002485 ORTHO05D002629 1.2e-21 106.7 72 75.0
Hund11427 Selenicereus undatus HOM05D002485 ORTHO05D002629 1.2e-21 106.7 72 73.6
Sc22g0005280 Simmondsia chinensis HOM05D002485 ORTHO05D002629 1.2e-21 106.7 71 73.2
Eucgr.D01799 Eucalyptus grandis HOM05D002485 ORTHO05D002629 1.6e-21 106.3 72 72.2
Atru.chr9.2092 Acer truncatum HOM05D002485 ORTHO05D002629 2.1e-21 105.9 71 71.8
A08p21910 Brassica napus HOM05D002485 ORTHO05D002629 2.1e-21 105.9 62 87.1
COL.COLO4_16964 Corchorus olitorius HOM05D002485 ORTHO05D002629 2.8e-21 105.5 72 73.6
Solyc11g018560.2 Solanum lycopersicum HOM05D002485 ORTHO05D002629 2.8e-21 105.5 71 71.8
Sopen11g009530 Solanum pennellii HOM05D002485 ORTHO05D002629 2.8e-21 105.5 71 71.8
Thecc.03G307800 Theobroma cacao HOM05D002485 ORTHO05D002629 2.8e-21 105.5 72 70.8
CSS0045914 Camellia sinensis var. sinensis HOM05D002485 ORTHO05D002629 4.7e-21 104.8 72 72.2
Nitab4.5_0001018g0100 Nicotiana tabacum HOM05D002485 ORTHO05D002629 4.7e-21 104.8 71 70.4
SGA_v2.0_scaffold173G39121 Striga asiatica HOM05D002485 ORTHO05D002629 4.7e-21 104.8 71 69.0
arahy.Tifrunner.gnm1.ann1.7AP800 Arachis hypogaea HOM05D002485 ORTHO05D002629 6.2e-21 104.4 72 73.6
ECA234G1159 Erigeron canadensis HOM05D000431 ORTHO05D000364 6.2e-21 104.4 71 70.4
Glyma.19G116200 Glycine max HOM05D002485 ORTHO05D002629 6.2e-21 104.4 72 72.2
GSVIVG01019058001 Vitis vinifera HOM05D002485 ORTHO05D002629 6.2e-21 104.4 71 71.8
GSVIVG01019439001 Vitis vinifera HOM05D002485 ORTHO05D002629 6.2e-21 104.4 71 71.8
MSTRG.13866 Avicennia marina HOM05D002485 ORTHO05D002629 8.0e-21 104.0 71 69.0
Gohir.A03G000043 Gossypium hirsutum HOM05D002485 ORTHO05D002629 1.1e-20 103.6 72 70.8
Gohir.D03G175300 Gossypium hirsutum HOM05D002485 ORTHO05D002629 1.1e-20 103.6 72 70.8
Gorai.003G184300 Gossypium raimondii HOM05D002485 ORTHO05D002629 1.1e-20 103.6 72 70.8
Oeu059575.1 Olea europaea HOM05D002485 ORTHO05D002629 1.1e-20 103.6 71 69.0
arahy.Tifrunner.gnm1.ann1.D7E6ZG Arachis hypogaea HOM05D002485 ORTHO05D002629 1.4e-20 103.2 72 72.2
Migut.A00704 Erythranthe guttata HOM05D002485 ORTHO05D002629 1.4e-20 103.2 71 69.0
Prupe.1G563200 Prunus persica HOM05D002485 ORTHO05D002629 1.4e-20 103.2 71 69.0
FAN07G2448 Fragaria x ananassa HOM05D007128 ORTHO05D009059 1.8e-20 102.8 72 72.2
Prupe.1G080900 Prunus persica HOM05D002485 ORTHO05D002629 2.3e-20 102.4 71 69.0
QL03p004287 Quercus lobata HOM05D002485 ORTHO05D002629 2.3e-20 102.4 71 69.0
CiPaw.09G168400 Carya illinoinensis HOM05D002485 ORTHO05D002629 3.1e-20 102.1 71 67.6
Haze_20433 Corylus avellana HOM05D002485 ORTHO05D002629 3.1e-20 102.1 71 70.4
DCAR_000640 Daucus carota HOM05D002485 ORTHO05D002629 3.1e-20 102.1 72 69.4
TAR629G0963 Trochodendron aralioides HOM05D002485 ORTHO05D002629 3.1e-20 102.1 71 69.0
CANSAT56G2344 Cannabis sativa HOM05D002485 ORTHO05D002629 4.0e-20 101.7 71 69.0
PGSC0003DMG400000893 Solanum tuberosum HOM05D002485 ORTHO05D002629 4.0e-20 101.7 71 69.0
Manes.01G051500 Manihot esculenta HOM05D002485 ORTHO05D002629 5.2e-20 101.3 71 71.8
Rhsim07G0086400 Rhododendron simsii HOM05D002485 ORTHO05D002629 6.8e-20 100.9 72 66.7
PGSC0003DMG400015775 Solanum tuberosum HOM05D002485 ORTHO05D002629 6.8e-20 100.9 69 69.6
BolC1t01788H Brassica oleracea HOM05D002485 ORTHO05D002629 8.9e-20 100.5 73 69.9
Lsat_1_v5_gn_7_74860 Lactuca sativa HOM05D002485 ORTHO05D002629 8.9e-20 100.5 72 70.8
EL10Ac5g12848 Beta vulgaris HOM05D002485 ORTHO05D002629 1.2e-19 100.1 71 67.6
Lj1g0019498 Lotus japonicus HOM05D002485 ORTHO05D002629 1.2e-19 100.1 70 70.0
Medtr7g086470 Medicago truncatula HOM05D002485 ORTHO05D002629 1.2e-19 100.1 72 68.1
Psat3g087240 Pisum sativum HOM05D002485 ORTHO05D002629 1.2e-19 100.1 72 68.1
Potri.001G097801 Populus trichocarpa HOM05D002485 ORTHO05D002629 1.2e-19 100.1 72 65.3
Sed0004945 Sechium edule HOM05D002485 ORTHO05D002629 1.2e-19 100.1 71 67.6
SalBow1G2843 Salvia bowleyana HOM05D002485 ORTHO05D002629 1.5e-19 99.8 71 67.6
Lalb_Chr14g0364801 Lupinus albus HOM05D002485 ORTHO05D002629 2.0e-19 99.4 72 70.8
Actinidia28332 Actinidia chinensis HOM05D002485 ORTHO05D002629 2.6e-19 99.0 72 66.7
Lalb_Chr22g0358791 Lupinus albus HOM05D002485 ORTHO05D002629 2.6e-19 99.0 72 69.4
Sabra01G0073200 Salix brachista HOM05D002485 ORTHO05D002629 2.6e-19 99.0 72 65.3
Ca_08307_v3 Cicer arietinum L. HOM05D002485 ORTHO05D002629 4.4e-19 98.2 72 66.7
Hma1.2p1_0645F.1_g194830 Hydrangea macrophylla HOM05D002485 ORTHO05D002629 4.4e-19 98.2 72 66.7
MD12G1010000 Malus domestica HOM05D002485 ORTHO05D002629 4.4e-19 98.2 68 69.1
Oeu042368.1 Olea europaea HOM05D002485 ORTHO05D002629 4.4e-19 98.2 66 71.2
TPR.G17870 Trifolium pratense HOM05D002485 ORTHO05D002629 4.4e-19 98.2 72 66.7
MD14G1007200 Malus domestica HOM05D002485 ORTHO05D002629 5.8e-19 97.8 68 69.1
SalBow1G3970 Salvia bowleyana HOM05D002485 ORTHO05D002629 5.8e-19 97.8 71 66.2
SGA_v2.0_scaffold96G29006 Striga asiatica HOM05D002485 ORTHO05D002629 9.8e-19 97.1 71 64.8
Actinidia10618 Actinidia chinensis HOM05D002485 ORTHO05D002629 1.3e-18 96.7 72 63.9
Cc08_g15430 Coffea canephora HOM05D002485 ORTHO05D002629 2.9e-18 95.5 71 63.4
AUR62010767 Chenopodium quinoa HOM05D002485 ORTHO05D002629 8.3e-18 94.0 71 63.4
TAR636G1130 Trochodendron aralioides HOM05D002485 ORTHO05D002629 1.1e-17 93.6 71 63.4
AUR62021509 Chenopodium quinoa HOM05D002485 ORTHO05D002629 1.4e-17 93.2 71 62.0
Aqoxy7G01579 Aquilegia oxysepala HOM05D002485 ORTHO05D002629 1.9e-17 92.8 71 62.0
Os01g0593500 Oryza sativa ssp. japonica HOM05D002485 ORTHO05D002629 3.2e-17 92.0 71 63.4
ClCG10G015820 Citrullus lanatus HOM05D002485 ORTHO05D002629 5.4e-17 91.3 58 74.1
CDE10G0677 Ceratophyllum demersum HOM05D002485 ORTHO05D002629 9.2e-17 90.5 71 60.6
Os05g0270000 Oryza sativa ssp. japonica HOM05D002485 ORTHO05D002629 2.1e-16 89.4 71 60.6
ATR1127G139 Amborella trichopoda HOM05D002485 ORTHO05D002629 7.8e-16 87.4 73 64.4
PSO135G0521 Papaver somniferum HOM05D002485 ORTHO05D002629 1.0e-15 87.0 72 61.1
PSO384G4895 Papaver somniferum HOM05D002485 ORTHO05D002629 1.0e-15 87.0 72 61.1
PSO782G0236 Papaver somniferum HOM05D002485 ORTHO05D002629 1.0e-15 87.0 72 61.1
AUR62019768 Chenopodium quinoa HOM05D002485 ORTHO05D002629 1.3e-15 86.7 73 56.2
Cfa017704 Carpinus fangiana HOM05D002156 ORTHO05D002328 3.0e-15 85.5 58 70.7
HPP92_022952 Vanilla planifolia HOM05D001537 ORTHO05D002595 6.6e-15 84.3 57 68.4
Zm00001eb357570 Zea mays HOM05D002485 ORTHO05D002629 1.5e-14 83.2 65 61.5
SEGI_03456 Sequoiadendron giganteum HOM05D002485 ORTHO05D002629 1.2e-13 80.1 70 57.1
Ah.07g196790 Amaranthus hybridus HOM05D002485 ORTHO05D002629 6.2e-13 77.8 55 69.1
SEGI_20111 Sequoiadendron giganteum HOM05D002485 ORTHO05D002629 5.8e-11 71.2 58 60.3
Mapoly0078s0022 Marchantia polymorpha HOM05D002485 ORTHO05D002629 3.5e-08 62.0 70 47.1
COL.COLO4_11365 Corchorus olitorius HOM05D002485 ORTHO05D002629 3.0e-07 58.9 62 48.4
Atru.chr3.414 Acer truncatum HOM05D002485 ORTHO05D002629 3.9e-07 58.5 62 48.4
Cpa.g.sc6.390 Carica papaya HOM05D002485 ORTHO05D002629 3.9e-07 58.5 63 47.6
Nn5g29342 Nelumbo nucifera HOM05D002485 ORTHO05D002629 3.9e-07 58.5 71 43.7
FvH4_1g15520 Fragaria vesca HOM05D002485 ORTHO05D002629 6.6e-07 57.8 67 44.8
FAN19G2779 Fragaria x ananassa HOM05D002485 ORTHO05D002629 6.6e-07 57.8 67 44.8
FAN28G1524 Fragaria x ananassa HOM05D002485 ORTHO05D002629 6.6e-07 57.8 67 44.8
RcHm_v2.0_Chr2g0104801 Rosa chinensis HOM05D002485 ORTHO05D002629 6.6e-07 57.8 67 44.8
Rhsim10G0121000 Rhododendron simsii HOM05D002485 ORTHO05D002629 8.6e-07 57.4 63 47.6
CSS0035303 Camellia sinensis var. sinensis HOM05D002485 ORTHO05D002629 1.1e-06 57.0 72 43.1
CAN.G1282.3 Capsicum annuum HOM05D002485 ORTHO05D002629 1.1e-06 57.0 37 75.7
CAN.G3291.2 Capsicum annuum HOM05D002485 ORTHO05D002629 1.1e-06 57.0 37 75.7
Thecc.01G051000 Theobroma cacao HOM05D002485 ORTHO05D002629 1.9e-06 56.2 62 45.2
AagrBONN_evm.TU.Sc2ySwM_368.1117 Anthoceros agrestis HOM05D002485 ORTHO05D002629 2.5e-06 55.8 73 43.8
Hma1.2p1_0873F.1_g231300 Hydrangea macrophylla HOM05D002485 ORTHO05D002629 2.5e-06 55.8 71 39.4
TAR628G0313 Trochodendron aralioides HOM05D002485 ORTHO05D002629 2.5e-06 55.8 62 46.8
QL06p042646 Quercus lobata HOM05D002485 ORTHO05D002629 3.3e-06 55.5 62 43.5
vmacro05318 Vaccinium macrocarpon HOM05D002485 ORTHO05D002629 3.3e-06 55.5 64 43.8
Actinidia14018 Actinidia chinensis HOM05D002485 ORTHO05D002629 4.3e-06 55.1 63 49.2
Actinidia36507 Actinidia chinensis HOM05D002485 ORTHO05D002629 4.3e-06 55.1 63 49.2
ATR0225G035 Amborella trichopoda HOM05D002485 ORTHO05D002629 4.3e-06 55.1 62 43.5
FAN23G2706 Fragaria x ananassa HOM05D002485 ORTHO05D002629 4.3e-06 55.1 62 46.8
TWI53G1244 Tripterygium wilfordii HOM05D002485 ORTHO05D002629 5.6e-06 54.7 62 41.9
Actinidia12063 Actinidia chinensis HOM05D002485 ORTHO05D002629 7.3e-06 54.3 64 42.2
CANSAT01G2700 Cannabis sativa HOM05D002485 ORTHO05D002629 7.3e-06 54.3 73 38.4
CDE06G1327 Ceratophyllum demersum HOM05D002485 ORTHO05D002629 9.5e-06 53.9 67 43.3
TWI73G0212 Tripterygium wilfordii HOM05D002485 ORTHO05D002629 9.5e-06 53.9 62 41.9


User provided reference genes

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