Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p80040 Brassica napus HOM05D004035 ORTHO05D004631 1.9e-37 158.7 79 100.0
BolC3t20258H Brassica oleracea HOM05D004035 ORTHO05D004631 1.9e-37 158.7 79 100.0
BcaC01g00456 Brassica carinata HOM05D004035 ORTHO05D004631 1.4e-32 142.5 93 81.7
AL7G14420 Arabidopsis lyrata HOM05D004035 ORTHO05D004631 2.3e-27 125.2 103 68.9
Thhalv10024305m.g Eutrema salsugineum HOM05D004035 ORTHO05D004631 3.9e-27 124.4 103 68.9
Carub.0007s0370 Capsella rubella HOM05D004035 ORTHO05D004631 5.1e-27 124.0 103 68.0
CARHR244970 Cardamine hirsuta HOM05D004035 ORTHO05D004631 5.1e-27 124.0 103 68.0
Sp7g34290 Schrenkiella parvula HOM05D004035 ORTHO05D004631 5.1e-27 124.0 103 68.9
AT4G36630 Arabidopsis thaliana HOM05D004035 ORTHO05D004631 8.7e-27 123.2 103 68.0
A03p64370 Brassica napus HOM05D004035 ORTHO05D004631 8.7e-27 123.2 103 68.0
BolC7t46602H Brassica oleracea HOM05D004035 ORTHO05D004631 8.7e-27 123.2 103 68.0
BraA03t15502Z Brassica rapa HOM05D004035 ORTHO05D004631 8.7e-27 123.2 103 68.0
C07p61810 Brassica napus HOM05D004035 ORTHO05D004631 7.3e-26 120.2 103 67.0
Aa31LG6G13430 Aethionema arabicum HOM05D004035 ORTHO05D004631 1.6e-25 119.0 103 66.0
Actinidia12124 Actinidia chinensis HOM05D004035 ORTHO05D004631 1.2e-23 112.8 101 62.4
Actinidia36560 Actinidia chinensis HOM05D004035 ORTHO05D004631 1.5e-23 112.5 101 61.4
Nn1g04984 Nelumbo nucifera HOM05D004035 ORTHO05D004631 2.0e-23 112.1 101 61.4
Rhsim02G0182400 Rhododendron simsii HOM05D004035 ORTHO05D004631 4.4e-23 110.9 101 62.4
Haze_15090 Corylus avellana HOM05D004035 ORTHO05D004631 5.8e-23 110.5 101 61.4
vmacro11086 Vaccinium macrocarpon HOM05D004035 ORTHO05D004631 1.7e-22 109.0 101 60.4
GSVIVG01018960001 Vitis vinifera HOM05D004035 ORTHO05D004631 1.7e-22 109.0 101 60.4
Cfa004306 Carpinus fangiana HOM05D004035 ORTHO05D004631 2.2e-22 108.6 101 60.4
Dinv39986 Davidia involucrata HOM05D004035 ORTHO05D004631 2.2e-22 108.6 101 59.4
QL06p046086 Quercus lobata HOM05D004035 ORTHO05D004631 2.2e-22 108.6 101 60.4
CSS0025574 Camellia sinensis var. sinensis HOM05D004035 ORTHO05D004631 2.9e-22 108.2 101 59.4
Ciclev10024797m.g Citrus clementina HOM05D004035 ORTHO05D004631 2.9e-22 108.2 101 59.4
Duzib147G1708 Durio zibethinus HOM05D004035 ORTHO05D004631 2.9e-22 108.2 101 59.4
Thecc.01G133800 Theobroma cacao HOM05D004035 ORTHO05D004631 2.9e-22 108.2 101 59.4
CANSAT01G0227 Cannabis sativa HOM05D004035 ORTHO05D004631 3.8e-22 107.8 101 60.4
Manes.02G093700 Manihot esculenta HOM05D004035 ORTHO05D004631 3.8e-22 107.8 101 59.4
TWI73G0243 Tripterygium wilfordii HOM05D004035 ORTHO05D004631 4.9e-22 107.5 101 58.4
arahy.Tifrunner.gnm1.ann1.JC6DGE Arachis hypogaea HOM05D004035 ORTHO05D004631 1.1e-21 106.3 97 60.8
Eucgr.H01269 Eucalyptus grandis HOM05D004035 ORTHO05D004631 1.1e-21 106.3 101 58.4
Peaxi162Scf00366g00121 Petunia axillaris HOM05D004035 ORTHO05D004631 1.1e-21 106.3 92 63.0
PGR102G3072 Punica granatum HOM05D004035 ORTHO05D004631 1.1e-21 106.3 101 58.4
CiPaw.01G038000 Carya illinoinensis HOM05D004035 ORTHO05D004631 1.4e-21 105.9 101 58.4
Lj2C453G20 Lonicera japonica HOM05D004035 ORTHO05D004631 1.4e-21 105.9 101 58.4
Solyc07g056660.4 Solanum lycopersicum HOM05D004035 ORTHO05D004631 2.4e-21 105.1 103 59.2
Sopen07g030000 Solanum pennellii HOM05D004035 ORTHO05D004631 2.4e-21 105.1 103 59.2
PGSC0003DMG400027646 Solanum tuberosum HOM05D004035 ORTHO05D004631 2.4e-21 105.1 103 59.2
TAR376G0366 Trochodendron aralioides HOM05D004035 ORTHO05D004631 2.4e-21 105.1 97 59.8
Gohir.D11G190900 Gossypium hirsutum HOM05D004035 ORTHO05D004631 4.2e-21 104.4 103 59.2
Gorai.007G203400 Gossypium raimondii HOM05D004035 ORTHO05D004631 4.2e-21 104.4 103 59.2
PSO541G3635 Papaver somniferum HOM05D004035 ORTHO05D004631 4.2e-21 104.4 97 59.8
PSO675G4195 Papaver somniferum HOM05D004035 ORTHO05D004631 4.2e-21 104.4 97 59.8
arahy.Tifrunner.gnm1.ann1.ZDS5RA Arachis hypogaea HOM05D004035 ORTHO05D004631 5.4e-21 104.0 97 59.8
COL.COLO4_22081 Corchorus olitorius HOM05D004035 ORTHO05D004631 5.4e-21 104.0 101 56.4
Gohir.A11G184400 Gossypium hirsutum HOM05D004035 ORTHO05D004631 5.4e-21 104.0 103 59.2
Nitab4.5_0000178g0040 Nicotiana tabacum HOM05D004035 ORTHO05D004631 5.4e-21 104.0 92 62.0
Nitab4.5_0001385g0050 Nicotiana tabacum HOM05D004035 ORTHO05D004631 5.4e-21 104.0 92 62.0
Aqoxy6G01113 Aquilegia oxysepala HOM05D004035 ORTHO05D004631 7.1e-21 103.6 101 57.4
Cc03_g03620 Coffea canephora HOM05D004035 ORTHO05D004631 7.1e-21 103.6 103 59.2
FvH4_1g13311 Fragaria vesca HOM05D004035 ORTHO05D004631 7.1e-21 103.6 101 57.4
FAN19G0080 Fragaria x ananassa HOM05D004035 ORTHO05D004631 7.1e-21 103.6 101 57.4
HanXRQChr16g0530441 Helianthus annuus HOM05D004035 ORTHO05D004631 7.1e-21 103.6 102 57.8
SalBow8G0583 Salvia bowleyana HOM05D004035 ORTHO05D004631 7.1e-21 103.6 99 59.6
SGA_v2.0_scaffold276G46626 Striga asiatica HOM05D004035 ORTHO05D004631 7.1e-21 103.6 92 62.0
CAN.G1003.4 Capsicum annuum HOM05D004035 ORTHO05D004631 9.3e-21 103.2 103 59.2
Migut.H00988 Erythranthe guttata HOM05D004035 ORTHO05D004631 9.3e-21 103.2 92 60.9
Atru.chr3.574 Acer truncatum HOM05D004035 ORTHO05D004631 1.2e-20 102.8 101 57.4
ClCG07G009230 Citrullus lanatus HOM05D004035 ORTHO05D004631 1.2e-20 102.8 101 58.4
MELO3C017565.2 Cucumis melo HOM05D004035 ORTHO05D004631 1.2e-20 102.8 101 58.4
CsaV3_UNG172360 Cucumis sativus L. HOM05D004035 ORTHO05D004631 1.2e-20 102.8 101 58.4
Psat4g092560 Pisum sativum HOM05D004035 ORTHO05D004631 1.2e-20 102.8 97 57.7
Thecc.01G035900 Theobroma cacao HOM05D004035 ORTHO05D004631 1.2e-20 102.8 101 56.4
Prupe.7G154500 Prunus persica HOM05D004035 ORTHO05D004631 1.6e-20 102.4 102 55.9
Sed0003321 Sechium edule HOM05D004035 ORTHO05D004631 1.6e-20 102.4 101 58.4
CsaV3_4G004980 Cucumis sativus L. HOM05D004035 ORTHO05D004631 2.1e-20 102.1 101 57.4
FAN26G1872 Fragaria x ananassa HOM05D004035 ORTHO05D004631 2.1e-20 102.1 101 56.4
Solyc02g085220.4 Solanum lycopersicum HOM05D004035 ORTHO05D004631 2.1e-20 102.1 92 60.9
Sopen02g029920 Solanum pennellii HOM05D004035 ORTHO05D004631 2.1e-20 102.1 92 60.9
RcHm_v2.0_Chr2g0101581 Rosa chinensis HOM05D004035 ORTHO05D004631 2.7e-20 101.7 101 55.4
MD15G1261900 Malus domestica HOM05D004035 ORTHO05D004631 3.5e-20 101.3 101 56.4
Potri.005G123000 Populus trichocarpa HOM05D004035 ORTHO05D004631 3.5e-20 101.3 92 60.9
Potri.007G025700 Populus trichocarpa HOM05D004035 ORTHO05D004631 3.5e-20 101.3 92 60.9
MD02G1147600 Malus domestica HOM05D004035 ORTHO05D004631 4.6e-20 100.9 97 57.7
Oeu042264.1 Olea europaea HOM05D004035 ORTHO05D004631 4.6e-20 100.9 118 50.8
PGSC0003DMG400003507 Solanum tuberosum HOM05D004035 ORTHO05D004631 4.6e-20 100.9 92 60.9
TPR.G34978 Trifolium pratense HOM05D004035 ORTHO05D004631 4.6e-20 100.9 97 55.7
TPR.G22289 Trifolium pratense HOM05D004035 ORTHO05D004631 6.0e-20 100.5 101 57.4
FAN28G2497 Fragaria x ananassa HOM05D004035 ORTHO05D004631 7.8e-20 100.1 92 59.8
RcHm_v2.0_Chr2g0101111 Rosa chinensis HOM05D004035 ORTHO05D004631 7.8e-20 100.1 102 54.9
Sabra07G0022700 Salix brachista HOM05D004035 ORTHO05D004631 7.8e-20 100.1 92 62.0
Ca_22265_v3 Cicer arietinum L. HOM05D004035 ORTHO05D004631 1.3e-19 99.4 97 55.7
Ca_22279_v3 Cicer arietinum L. HOM05D004035 ORTHO05D004631 1.3e-19 99.4 97 55.7
ECA246G3379 Erigeron canadensis HOM05D004035 ORTHO05D004631 1.7e-19 99.0 91 58.2
Lj1g0016074 Lotus japonicus HOM05D004035 ORTHO05D004631 2.3e-19 98.6 97 55.7
LjContig00448g0016984 Lotus japonicus HOM05D004035 ORTHO05D004631 2.3e-19 98.6 97 55.7
Medtr8g077680 Medicago truncatula HOM05D004035 ORTHO05D004631 2.3e-19 98.6 97 55.7
CAN.G358.86 Capsicum annuum HOM05D004035 ORTHO05D004631 3.0e-19 98.2 96 57.3
TAR362G0832 Trochodendron aralioides HOM05D004035 ORTHO05D004631 3.0e-19 98.2 94 58.5
Lalb_Chr16g0388281 Lupinus albus HOM05D004035 ORTHO05D004631 3.9e-19 97.8 97 54.6
Hma1.2p1_0400F.1_g144430 Hydrangea macrophylla HOM05D004035 ORTHO05D004631 5.1e-19 97.4 93 60.2
Ca_24847_v3 Cicer arietinum L. HOM05D004035 ORTHO05D004631 6.6e-19 97.1 92 58.7
EL10Ac6g15563 Beta vulgaris HOM05D004035 ORTHO05D004631 8.7e-19 96.7 92 58.7
DCAR_025943 Daucus carota HOM05D004035 ORTHO05D004631 8.7e-19 96.7 97 52.6
AUR62004050 Chenopodium quinoa HOM05D004035 ORTHO05D004631 1.5e-18 95.9 91 58.2
Ah.02g125200 Amaranthus hybridus HOM05D004035 ORTHO05D004631 1.9e-18 95.5 103 55.3
arahy.Tifrunner.gnm1.ann1.6E6Z42 Arachis hypogaea HOM05D004035 ORTHO05D004631 1.9e-18 95.5 101 55.4
arahy.Tifrunner.gnm1.ann1.GM6JEQ Arachis hypogaea HOM05D004035 ORTHO05D004631 1.9e-18 95.5 101 55.4
Glyma.01G176000 Glycine max HOM05D004035 ORTHO05D004631 1.9e-18 95.5 92 59.8
Glyma.11G068300 Glycine max HOM05D004035 ORTHO05D004631 1.9e-18 95.5 92 59.8
Psat2g159680 Pisum sativum HOM05D004035 ORTHO05D004631 1.9e-18 95.5 92 59.8
Gohir.D03G014800 Gossypium hirsutum HOM05D004035 ORTHO05D004631 2.5e-18 95.1 92 56.5
Gorai.003G015100 Gossypium raimondii HOM05D004035 ORTHO05D004631 2.5e-18 95.1 92 56.5
AUR62007565 Chenopodium quinoa HOM05D004035 ORTHO05D004631 3.3e-18 94.7 91 57.1
Lalb_Chr09g0322391 Lupinus albus HOM05D004035 ORTHO05D004631 4.3e-18 94.4 92 58.7
ATR0743G236 Amborella trichopoda HOM05D004035 ORTHO05D004631 7.3e-18 93.6 92 55.4
Medtr5g020140 Medicago truncatula HOM05D004035 ORTHO05D004631 7.3e-18 93.6 92 59.8
Lj2g0023524 Lotus japonicus HOM05D004035 ORTHO05D004631 9.6e-18 93.2 102 53.9
Phvul.002G030300 Phaseolus vulgaris HOM05D004035 ORTHO05D004631 1.3e-17 92.8 92 57.6
VMungo1215G2866 Vigna mungo HOM05D004035 ORTHO05D004631 1.3e-17 92.8 92 57.6
Nn7g37554 Nelumbo nucifera HOM05D004035 ORTHO05D004631 1.6e-17 92.4 94 55.3
MBI07_g11484_MAGBIO Magnolia biondii HOM05D004035 ORTHO05D004631 4.8e-17 90.9 92 55.4
HPP92_004247 Vanilla planifolia HOM05D004035 ORTHO05D004631 4.8e-17 90.9 92 54.3
unitig_52.g17587 Utricularia gibba HOM05D004035 ORTHO05D004631 2.4e-16 88.6 91 52.7
Cpa.g.sc1294.1 Carica papaya HOM05D004035 ORTHO05D004631 3.1e-16 88.2 84 59.5
SEGI_13313 Sequoiadendron giganteum HOM05D004035 ORTHO05D004631 6.9e-16 87.0 94 53.2
Lsat_1_v5_gn_4_152080 Lactuca sativa HOM05D004035 ORTHO05D004631 9.0e-16 86.7 91 52.7
PSO017G4184 Papaver somniferum HOM05D004035 ORTHO05D004631 1.5e-15 85.9 92 52.2
CDE09G0689 Ceratophyllum demersum HOM05D004035 ORTHO05D004631 2.0e-15 85.5 103 47.6
PSO837G0008 Papaver somniferum HOM05D004035 ORTHO05D004631 3.4e-15 84.7 92 52.2
HanXRQChr09g0261471 Helianthus annuus HOM05D004035 ORTHO05D004631 5.8e-15 84.0 92 48.9
ECA232G2840 Erigeron canadensis HOM05D004035 ORTHO05D004631 2.9e-14 81.6 101 47.5
Lsat_1_v5_gn_3_76401 Lactuca sativa HOM05D004035 ORTHO05D004631 4.2e-13 77.8 95 48.4
Os03g0715500 Oryza sativa ssp. japonica HOM05D004035 ORTHO05D004631 7.9e-12 73.6 92 46.7
Zm00001eb055180 Zea mays HOM05D004035 ORTHO05D004631 1.0e-11 73.2 92 45.7
Mapoly0160s0027 Marchantia polymorpha HOM05D004035 ORTHO05D004631 1.3e-11 72.8 98 49.0
Pp3c10_5300 Physcomitrium patens HOM05D004035 ORTHO05D004631 3.0e-11 71.6 91 48.4
AagrBONN_evm.TU.Sc2ySwM_340.480 Anthoceros agrestis HOM05D004035 ORTHO05D004631 1.5e-10 69.3 95 43.2
Oeu009413.1 Olea europaea HOM05D004035 ORTHO05D004631 9.0e-08 60.1 67 53.7
DCAR_017291 Daucus carota HOM05D004035 ORTHO05D004631 1.2e-07 59.7 41 70.7
CBR_g34968 Chara braunii HOM05D004035 ORTHO05D004631 1.5e-07 59.3 87 41.4
Oeu033646.1 Olea europaea HOM05D004035 ORTHO05D004631 9.9e-07 56.6 64 50.0
TPR.G13585 Trifolium pratense HOM05D004035 ORTHO05D004631 3.8e-06 54.7 42 66.7


User provided reference genes

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