Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p79720 Brassica napus HOM05D004410 ORTHO05D027626 1.0e-51 206.5 103 100.0
BolC5t31886H Brassica oleracea HOM05D004410 ORTHO05D027626 1.3e-51 206.1 103 99.0
BcaC05g27254 Brassica carinata HOM05D004410 ORTHO05D027626 6.4e-46 187.2 95 94.7
BraA03t10599Z Brassica rapa HOM05D004410 ORTHO05D006134 2.1e-36 155.6 83 94.0
A03p12910 Brassica napus HOM05D004410 ORTHO05D006134 4.7e-33 144.4 73 97.3
A10p17910 Brassica napus HOM05D004410 ORTHO05D006134 4.7e-33 144.4 73 97.3
C03p15070 Brassica napus HOM05D004410 ORTHO05D006134 4.7e-33 144.4 73 97.3
BolC3t13949H Brassica oleracea HOM05D004410 ORTHO05D006134 4.7e-33 144.4 73 97.3
Carub.0008s1778 Capsella rubella HOM05D004410 ORTHO05D006134 1.8e-32 142.5 73 95.9
Sp6g19010 Schrenkiella parvula HOM05D004410 ORTHO05D006134 3.1e-32 141.7 73 95.9
Aa31sc36G40 Aethionema arabicum HOM05D004410 ORTHO05D006134 8.9e-32 140.2 73 93.2
Thhalv10014295m.g Eutrema salsugineum HOM05D004410 ORTHO05D006134 1.2e-31 139.8 73 93.2
CARHR271080 Cardamine hirsuta HOM05D004410 ORTHO05D006134 3.4e-31 138.3 73 93.2
AL8G33250 Arabidopsis lyrata HOM05D004410 ORTHO05D006134 4.4e-31 137.9 73 91.8
Cfa005486 Carpinus fangiana HOM05D004410 ORTHO05D006134 3.7e-30 134.8 73 87.7
Cfa013429 Carpinus fangiana HOM05D004410 ORTHO05D006134 3.7e-30 134.8 73 87.7
Haze_21974 Corylus avellana HOM05D004410 ORTHO05D006134 3.7e-30 134.8 73 87.7
BcaB05g22331 Brassica carinata HOM05D004410 ORTHO05D006134 4.9e-30 134.4 73 90.4
AT5G57280 Arabidopsis thaliana HOM05D004410 ORTHO05D006134 6.4e-30 134.0 73 89.0
PSO210G0218 Papaver somniferum HOM05D004410 ORTHO05D006134 8.3e-30 133.7 80 82.5
THA.LOC104817784 Tarenaya hassleriana HOM05D004410 ORTHO05D006134 8.3e-30 133.7 73 87.7
BcaC03g14169 Brassica carinata HOM05D004410 ORTHO05D006134 1.1e-29 133.3 73 89.0
C02p14420 Brassica napus HOM05D004410 ORTHO05D006134 1.1e-29 133.3 73 89.0
BolC2t07566H Brassica oleracea HOM05D004410 ORTHO05D006134 1.1e-29 133.3 73 89.0
Ciclev10009088m.g Citrus clementina HOM05D004410 ORTHO05D006134 1.4e-29 132.9 73 86.3
Glyma.17G060900 Glycine max HOM05D004410 ORTHO05D006134 1.4e-29 132.9 73 89.0
Glyma.13G099200 Glycine max HOM05D004410 ORTHO05D006134 1.9e-29 132.5 73 87.7
TAR626G0361 Trochodendron aralioides HOM05D004410 ORTHO05D006134 1.9e-29 132.5 73 87.7
PSO210G4717 Papaver somniferum HOM05D004410 ORTHO05D006134 3.2e-29 131.7 80 81.2
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 5.4e-29 131.0 73 86.3
SalBow8G1532 Salvia bowleyana HOM05D004410 ORTHO05D006134 5.4e-29 131.0 73 83.6
TAR383G0389 Trochodendron aralioides HOM05D004410 ORTHO05D006134 5.4e-29 131.0 74 83.8
Actinidia40404 Actinidia chinensis HOM05D004410 ORTHO05D006134 7.1e-29 130.6 73 84.9
Potri.001G338700 Populus trichocarpa HOM05D004410 ORTHO05D006134 7.1e-29 130.6 73 83.6
Thecc.09G180400 Theobroma cacao HOM05D004410 ORTHO05D006134 7.1e-29 130.6 80 80.0
Duzib170G0185 Durio zibethinus HOM05D004410 ORTHO05D006134 9.2e-29 130.2 80 80.0
VMungo1215G0063 Vigna mungo HOM05D004410 ORTHO05D006134 9.2e-29 130.2 73 83.6
arahy.Tifrunner.gnm1.ann1.2H7I9L Arachis hypogaea HOM05D004410 ORTHO05D006134 1.2e-28 129.8 73 84.9
arahy.Tifrunner.gnm1.ann1.FB81IM Arachis hypogaea HOM05D004410 ORTHO05D006134 1.2e-28 129.8 73 84.9
Lj7C624G8 Lonicera japonica HOM05D004410 ORTHO05D006134 1.2e-28 129.8 73 83.6
QL11p004818 Quercus lobata HOM05D004410 ORTHO05D006134 1.2e-28 129.8 73 83.6
vmacro16466 Vaccinium macrocarpon HOM05D004410 ORTHO05D006134 1.2e-28 129.8 73 83.6
MSTRG.4318 Avicennia marina HOM05D004410 ORTHO05D006134 1.6e-28 129.4 73 82.2
Cpa.g.sc95.31 Carica papaya HOM05D004410 ORTHO05D006134 1.6e-28 129.4 73 84.9
Dinv26445 Davidia involucrata HOM05D004410 ORTHO05D006134 1.6e-28 129.4 73 83.6
Rhsim12G0146500 Rhododendron simsii HOM05D004410 ORTHO05D006134 1.6e-28 129.4 73 83.6
GSVIVG01010906001 Vitis vinifera HOM05D004410 ORTHO05D006134 1.6e-28 129.4 73 83.6
Ah.14g083650 Amaranthus hybridus HOM05D004410 ORTHO05D006134 2.1e-28 129.0 73 84.9
CSS0020745 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 2.1e-28 129.0 73 83.6
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 2.1e-28 129.0 73 83.6
ECA236G3126 Erigeron canadensis HOM05D004410 ORTHO05D006134 2.1e-28 129.0 73 83.6
Sabra03G0001500 Salix brachista HOM05D004410 ORTHO05D006134 2.1e-28 129.0 73 83.6
TWI75G1515 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 2.1e-28 129.0 73 84.9
CiPaw.08G034000 Carya illinoinensis HOM05D004410 ORTHO05D006134 2.7e-28 128.6 73 83.6
Gohir.D08G028700 Gossypium hirsutum HOM05D004410 ORTHO05D006134 2.7e-28 128.6 80 78.8
Gorai.004G025800 Gossypium raimondii HOM05D004410 ORTHO05D006134 2.7e-28 128.6 80 78.8
Lj5C681T1 Lonicera japonica HOM05D004410 ORTHO05D006134 3.5e-28 128.3 73 80.8
Lj3g0011551 Lotus japonicus HOM05D004410 ORTHO05D006134 4.6e-28 127.9 73 83.6
CANSAT56G1932 Cannabis sativa HOM05D004410 ORTHO05D006134 6.0e-28 127.5 73 82.2
COL.COLO4_23558 Corchorus olitorius HOM05D004410 ORTHO05D006134 6.0e-28 127.5 80 78.8
Eucgr.L02823 Eucalyptus grandis HOM05D004410 ORTHO05D006134 6.0e-28 127.5 73 82.2
Lsat_1_v5_gn_8_69561 Lactuca sativa HOM05D004410 ORTHO05D005614 6.0e-28 127.5 73 82.2
Manes.06G021200 Manihot esculenta HOM05D004410 ORTHO05D006134 6.0e-28 127.5 73 80.8
Potri.018G049800 Populus trichocarpa HOM05D004410 ORTHO05D006134 6.0e-28 127.5 73 82.2
Hund26318 Selenicereus undatus HOM05D004410 ORTHO05D006134 6.0e-28 127.5 73 80.8
Lalb_Chr07g0180591 Lupinus albus HOM05D004410 ORTHO05D006134 7.8e-28 127.1 73 83.6
Nn8g40987 Nelumbo nucifera HOM05D004410 ORTHO05D006134 7.8e-28 127.1 73 80.8
Eucgr.C02260 Eucalyptus grandis HOM05D004410 ORTHO05D006134 1.0e-27 126.7 73 80.8
Lj3g0017980 Lotus japonicus HOM05D004410 ORTHO05D006134 1.0e-27 126.7 73 82.2
Sc14g0001390 Simmondsia chinensis HOM05D004410 ORTHO05D006134 1.0e-27 126.7 73 80.8
Phvul.003G141775 Phaseolus vulgaris HOM05D004410 ORTHO05D006134 1.3e-27 126.3 73 80.8
TPR.G5373 Trifolium pratense HOM05D004410 ORTHO05D006134 1.3e-27 126.3 73 83.6
CANSAT78G0037 Cannabis sativa HOM05D004410 ORTHO05D006134 1.7e-27 125.9 73 79.5
CANSAT78G1648 Cannabis sativa HOM05D004410 ORTHO05D006134 1.7e-27 125.9 73 79.5
Ah.09g230150 Amaranthus hybridus HOM05D004410 ORTHO05D006134 2.3e-27 125.6 73 82.2
CANSAT78G0098 Cannabis sativa HOM05D004410 ORTHO05D006134 2.3e-27 125.6 73 82.2
MELO3C008596.2 Cucumis melo HOM05D004410 ORTHO05D006134 2.3e-27 125.6 73 79.5
CsaV3_5G008380 Cucumis sativus L. HOM05D004410 ORTHO05D006134 2.3e-27 125.6 73 79.5
RcHm_v2.0_Chr4g0400231 Rosa chinensis HOM05D004410 ORTHO05D006134 2.3e-27 125.6 73 82.2
SGA_v2.0_scaffold172G39079 Striga asiatica HOM05D004410 ORTHO05D006134 2.3e-27 125.6 73 79.5
TWI36G0301 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 2.3e-27 125.6 73 83.6
unitig_26.g9274 Utricularia gibba HOM05D004410 ORTHO05D006134 2.3e-27 125.6 73 82.2
CDE06G0833 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 3.0e-27 125.2 73 76.7
HanXRQChr06g0179561 Helianthus annuus HOM05D004410 ORTHO05D006134 3.0e-27 125.2 73 79.5
Aqoxy3G03862 Aquilegia oxysepala HOM05D004410 ORTHO05D006134 3.9e-27 124.8 73 82.2
Gohir.A08G018100 Gossypium hirsutum HOM05D004410 ORTHO05D006134 3.9e-27 124.8 80 76.2
Oeu016123.1 Olea europaea HOM05D004410 ORTHO05D006134 3.9e-27 124.8 73 82.2
CANSAT78G1079 Cannabis sativa HOM05D004410 ORTHO05D006134 5.1e-27 124.4 73 80.8
Sabra03G0004700 Salix brachista HOM05D004410 ORTHO05D006134 5.1e-27 124.4 75 77.3
PGSC0003DMG400027051 Solanum tuberosum HOM05D004410 ORTHO05D006134 5.1e-27 124.4 73 78.1
Psat0s4042g0040 Pisum sativum HOM05D004410 ORTHO05D006134 6.6e-27 124.0 73 82.2
Migut.D01496 Erythranthe guttata HOM05D004410 ORTHO05D006134 8.6e-27 123.6 73 79.5
EL10Ac8g18319 Beta vulgaris HOM05D004410 ORTHO05D006134 1.1e-26 123.2 73 80.8
AUR62021333 Chenopodium quinoa HOM05D004410 ORTHO05D006134 1.1e-26 123.2 73 80.8
AUR62033248 Chenopodium quinoa HOM05D004410 ORTHO05D006134 1.1e-26 123.2 73 80.8
Nitab4.5_0003040g0070 Nicotiana tabacum HOM05D004410 ORTHO05D006134 1.1e-26 123.2 73 78.1
Solyc06g072250.3 Solanum lycopersicum HOM05D004410 ORTHO05D006134 1.1e-26 123.2 73 78.1
Sopen06g028570 Solanum pennellii HOM05D004410 ORTHO05D006134 1.1e-26 123.2 73 78.1
Cc09_g07700 Coffea canephora HOM05D004410 ORTHO05D006134 1.5e-26 122.9 73 78.1
Nitab4.5_0000033g0380 Nicotiana tabacum HOM05D004410 ORTHO05D006134 1.5e-26 122.9 73 78.1
Prupe.1G079400 Prunus persica HOM05D004410 ORTHO05D006134 1.5e-26 122.9 73 79.5
CANSAT78G0925 Cannabis sativa HOM05D004410 ORTHO05D006134 1.9e-26 122.5 73 79.5
MELO3C008923.2 Cucumis melo HOM05D004410 ORTHO05D006134 1.9e-26 122.5 73 76.7
MD13G1245300 Malus domestica HOM05D004410 ORTHO05D006134 1.9e-26 122.5 73 79.5
Sed0003098 Sechium edule HOM05D004410 ORTHO05D006134 1.9e-26 122.5 73 76.7
CAN.G65.73 Capsicum annuum HOM05D004410 ORTHO05D006134 2.5e-26 122.1 73 76.7
CANSAT21G0708 Cannabis sativa HOM05D004410 ORTHO05D006134 3.3e-26 121.7 73 76.7
FvH4_4g07620 Fragaria vesca HOM05D004410 ORTHO05D006134 3.3e-26 121.7 73 78.1
FAN07G0604 Fragaria x ananassa HOM05D004410 ORTHO05D006134 3.3e-26 121.7 73 78.1
FAN12G4072 Fragaria x ananassa HOM05D004410 ORTHO05D006134 3.3e-26 121.7 73 78.1
Nitab4.5_0000339g0120 Nicotiana tabacum HOM05D004410 ORTHO05D006134 3.3e-26 121.7 73 75.3
Peaxi162Scf00171g00233 Petunia axillaris HOM05D004410 ORTHO05D006134 3.3e-26 121.7 73 76.7
SGA_v2.0_scaffold36G14352 Striga asiatica HOM05D004410 ORTHO05D006134 3.3e-26 121.7 73 76.7
ATR0561G198 Amborella trichopoda HOM05D004410 ORTHO05D006134 4.3e-26 121.3 73 78.1
Oeu038397.1 Olea europaea HOM05D004410 ORTHO05D006134 4.3e-26 121.3 73 79.5
FAN17G1447 Fragaria x ananassa HOM05D004410 ORTHO05D006134 5.6e-26 120.9 73 78.1
FAN22G1351 Fragaria x ananassa HOM05D004410 ORTHO05D006134 7.3e-26 120.6 73 76.7
Pp3c12_7620 Physcomitrium patens HOM05D004410 ORTHO05D006134 2.1e-25 119.0 73 76.7
AagrBONN_evm.TU.Sc2ySwM_344.4914 Anthoceros agrestis HOM05D004410 ORTHO05D006134 3.6e-25 118.2 73 75.3
MD16G1253000 Malus domestica HOM05D004410 ORTHO05D006134 4.7e-25 117.9 74 78.4
Mapoly0020s0093 Marchantia polymorpha HOM05D004410 ORTHO05D006134 4.7e-25 117.9 73 71.2
Zm00001eb258180 Zea mays HOM05D004410 ORTHO05D006134 4.7e-25 117.9 73 75.3
SEGI_20363 Sequoiadendron giganteum HOM05D004410 ORTHO05D006134 6.2e-25 117.5 73 74.0
CSS0004658 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 1.1e-24 116.7 73 78.1
Os02g0804300 Oryza sativa ssp. japonica HOM05D004410 ORTHO05D006134 1.4e-24 116.3 73 74.0
Medtr4g007420 Medicago truncatula HOM05D004410 ORTHO05D006134 1.8e-24 115.9 78 67.9
Nitab4.5_0000782g0050 Nicotiana tabacum HOM05D004410 ORTHO05D006134 8.9e-24 113.6 80 68.8
SMO367G1042 Selaginella moellendorffii HOM05D004410 ORTHO05D006134 8.9e-24 113.6 73 74.0
TPR.G26767 Trifolium pratense HOM05D004410 ORTHO05D006134 2.6e-23 112.1 73 69.9
PGR044G0126 Punica granatum HOM05D004410 ORTHO05D006134 5.8e-23 110.9 104 56.7
Cre09.g398104 Chlamydomonas reinhardtii HOM05D004410 ORTHO05D006134 1.3e-22 109.8 72 70.8
AagrBONN_evm.TU.Sc2ySwM_344.3468 Anthoceros agrestis HOM05D004410 ORTHO05D006134 2.7e-20 102.1 80 61.2
CBR_g3667 Chara braunii HOM05D004410 ORTHO05D006134 1.0e-19 100.1 72 65.3
PSO210G2992 Papaver somniferum HOM05D004410 ORTHO05D006134 2.3e-19 99.0 62 77.4
MCO01G124 Micromonas commoda HOM05D004410 ORTHO05D006134 1.5e-18 96.3 75 57.3
Ca_20535_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 9.6e-18 93.6 70 65.7
Ca_20536_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 9.6e-18 93.6 70 65.7
Ca_30867_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 9.6e-18 93.6 70 65.7
PRCOL_00001013 Prasinoderma coloniale HOM05D004410 ORTHO05D006134 9.6e-18 93.6 77 57.1
Glyma.17G179900 Glycine max HOM05D004410 ORTHO05D027626 3.6e-17 91.7 47 89.4
ClCG11G007510 Citrullus lanatus HOM05D004410 ORTHO05D006134 3.1e-16 88.6 74 58.1
Medtr4g127640 Medicago truncatula HOM05D004410 ORTHO05D006134 5.3e-16 87.8 51 76.5
Atru.chr12.1677 Acer truncatum HOM05D004410 ORTHO05D006134 2.0e-15 85.9 69 65.2
MBI13_g31549_MAGBIO Magnolia biondii HOM05D004410 ORTHO05D006134 2.0e-15 85.9 48 79.2
CAN.G65.105 Capsicum annuum HOM05D004410 ORTHO05D006134 5.8e-15 84.3 52 69.2
Cfa026974 Carpinus fangiana HOM05D004410 ORTHO05D006134 2.9e-14 82.0 73 58.9
Haze_27417 Corylus avellana HOM05D004410 ORTHO05D006134 1.9e-10 69.3 66 50.0
MCO02G313 Micromonas commoda HOM05D004410 ORTHO05D006134 2.8e-09 65.5 80 42.5
Peaxi162Scf03693g00003 Petunia axillaris HOM05D004410 ORTHO05D006134 2.8e-09 65.5 43 67.4
Ca_20516_v3 Cicer arietinum L. HOM05D004410 ORTHO05D147600 4.0e-08 61.6 43 62.8


User provided reference genes

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