Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p74200 Brassica napus HOM05D003723 ORTHO05D004306 0.0e+00 1630.2 809 100.0
A08p26240 Brassica napus HOM05D003723 ORTHO05D004306 0.0e+00 1570.8 809 96.0
BcaC01g01603 Brassica carinata HOM05D003723 ORTHO05D004306 0.0e+00 1566.2 794 98.0
BraA08t34575Z Brassica rapa HOM05D003723 ORTHO05D004306 0.0e+00 1545.8 794 96.0
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 0.0e+00 1521.9 787 95.3
BcaC01g06947 Brassica carinata HOM05D003723 ORTHO05D004306 0.0e+00 1486.1 794 92.2
Sp1g23720 Schrenkiella parvula HOM05D003723 ORTHO05D004306 0.0e+00 1378.6 812 85.7
Thhalv10006817m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 0.0e+00 1372.5 815 83.9
AL1G40900 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 0.0e+00 1351.3 815 83.2
AT1G27470 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 0.0e+00 1340.5 815 82.3
Carub.0001s2603 Capsella rubella HOM05D003723 ORTHO05D004306 0.0e+00 1337.4 814 81.9
BcaC05g26751 Brassica carinata HOM05D003723 ORTHO05D004306 0.0e+00 1332.0 809 83.2
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 0.0e+00 1315.1 797 82.3
BcaC05g26567 Brassica carinata HOM05D003723 ORTHO05D004306 0.0e+00 1312.4 807 81.7
CARHR027080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 0.0e+00 1309.7 808 81.4
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 0.0e+00 1298.1 794 82.0
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 0.0e+00 1294.6 798 81.5
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 0.0e+00 1290.4 792 82.1
AL6G41310 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 0.0e+00 1180.2 817 72.8
AT4G07410 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 0.0e+00 1176.4 818 72.7
Thhalv10028433m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 0.0e+00 1171.0 820 72.1
BcaB01g02881 Brassica carinata HOM05D003723 ORTHO05D004306 0.0e+00 1168.7 813 72.2
Aa31sc622G20 Aethionema arabicum HOM05D003723 ORTHO05D004306 0.0e+00 1168.3 823 72.2
Sp6g10450 Schrenkiella parvula HOM05D003723 ORTHO05D004306 0.0e+00 1165.2 818 71.6
Carub.0006s2652 Capsella rubella HOM05D003723 ORTHO05D004306 0.0e+00 1161.0 821 71.1
CARHR287080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 0.0e+00 1160.6 807 72.2
A03p27910 Brassica napus HOM05D003723 ORTHO05D004306 0.0e+00 1158.7 812 71.8
BolC3t15689H Brassica oleracea HOM05D003723 ORTHO05D004306 0.0e+00 1156.7 812 71.8
C03p33700 Brassica napus HOM05D003723 ORTHO05D004306 0.0e+00 1156.4 812 71.8
BraA03t12004Z Brassica rapa HOM05D003723 ORTHO05D004306 0.0e+00 1155.2 812 71.7
BcaC01g04785 Brassica carinata HOM05D003723 ORTHO05D004306 0.0e+00 1149.4 810 71.7
Aa31LG7G10210 Aethionema arabicum HOM05D003723 ORTHO05D004306 0.0e+00 1148.7 814 71.5
THA.LOC104824968 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 0.0e+00 1086.2 830 66.9
THA.LOC104825785 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 1.3e-308 1062.8 818 66.3
Cpa.g.sc142.42 Carica papaya HOM05D003723 ORTHO05D004306 5.5e-302 1040.8 827 64.2
Cfa013762 Carpinus fangiana HOM05D003723 ORTHO05D004306 1.7e-287 992.6 823 62.3
Ciclev10000301m.g Citrus clementina HOM05D003723 ORTHO05D004306 1.4e-286 989.6 822 61.3
Potri.002G117500 Populus trichocarpa HOM05D003723 ORTHO05D004306 2.1e-285 985.7 824 61.7
QL93p0154_0009 Quercus lobata HOM05D003723 ORTHO05D004306 1.4e-284 983.0 823 61.0
Potri.014G014900 Populus trichocarpa HOM05D003723 ORTHO05D004306 2.3e-284 982.2 823 62.0
QL12p038269 Quercus lobata HOM05D003723 ORTHO05D004306 3.0e-284 981.9 823 60.9
CiPaw.08G050900 Carya illinoinensis HOM05D003723 ORTHO05D004306 4.4e-283 978.0 825 61.5
Sabra02G0092000 Salix brachista HOM05D003723 ORTHO05D004306 8.2e-282 973.8 841 61.1
Dinv44943 Davidia involucrata HOM05D003723 ORTHO05D004306 1.1e-281 973.4 824 61.7
Sabra14G0008900 Salix brachista HOM05D003723 ORTHO05D004306 1.8e-281 972.6 829 61.4
CSS0046104 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 7.0e-281 970.7 823 60.4
Manes.02G183600 Manihot esculenta HOM05D003723 ORTHO05D004306 1.2e-280 969.9 822 60.6
Prupe.1G421300 Prunus persica HOM05D003723 ORTHO05D004306 1.3e-279 966.5 825 62.2
Atru.chr13.849 Acer truncatum HOM05D003723 ORTHO05D004306 1.7e-279 966.1 829 59.5
Haze_22418 Corylus avellana HOM05D003723 ORTHO05D004306 1.9e-278 962.6 861 59.0
CiPaw.07G173600 Carya illinoinensis HOM05D003723 ORTHO05D004306 1.2e-277 959.9 823 61.1
TWI56G1015 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 3.6e-277 958.4 828 59.2
MD08G1080300 Malus domestica HOM05D003723 ORTHO05D004306 8.0e-277 957.2 829 60.7
Cc10_g05060 Coffea canephora HOM05D003723 ORTHO05D004306 1.8e-276 956.1 827 60.0
MD15G1067400 Malus domestica HOM05D003723 ORTHO05D004306 4.0e-276 954.9 828 60.6
TAR628G0363 Trochodendron aralioides HOM05D003723 ORTHO05D004306 9.7e-275 950.3 823 60.4
MSTRG.24381 Avicennia marina HOM05D003723 ORTHO05D004306 2.2e-274 949.1 825 58.8
Sed0028163 Sechium edule HOM05D003723 ORTHO05D004306 4.8e-274 948.0 818 59.9
ClCG05G020690 Citrullus lanatus HOM05D003723 ORTHO05D004306 6.3e-274 947.6 825 60.5
MELO3C016827.2 Cucumis melo HOM05D003723 ORTHO05D004306 6.3e-274 947.6 821 60.5
CsaV3_4G035140 Cucumis sativus L. HOM05D003723 ORTHO05D004306 1.1e-273 946.8 821 60.2
Lj4A757T32 Lonicera japonica HOM05D003723 ORTHO05D004306 1.8e-273 946.0 826 58.2
Thecc.04G063000 Theobroma cacao HOM05D003723 ORTHO05D004306 1.6e-272 943.0 831 59.0
Eucgr.F02239 Eucalyptus grandis HOM05D003723 ORTHO05D004306 1.3e-271 939.9 821 59.2
Nitab4.5_0003725g0010 Nicotiana tabacum HOM05D003723 ORTHO05D004306 1.7e-271 939.5 829 59.1
DCAR_009874 Daucus carota HOM05D003723 ORTHO05D004306 2.2e-271 939.1 831 58.5
Gohir.D10G114400 Gossypium hirsutum HOM05D003723 ORTHO05D004306 2.9e-271 938.7 837 57.9
Gorai.011G126100 Gossypium raimondii HOM05D003723 ORTHO05D004306 1.2e-269 933.3 836 57.8
SGA_v2.0_scaffold28G11839 Striga asiatica HOM05D003723 ORTHO05D004306 2.7e-269 932.2 828 58.0
TWI12G0955 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 2.7e-269 932.2 825 58.2
PGR031G2627 Punica granatum HOM05D003723 ORTHO05D004306 1.8e-268 929.5 811 58.3
ECA247G0551 Erigeron canadensis HOM05D003723 ORTHO05D004306 2.3e-268 929.1 816 58.7
Duzib151G0173 Durio zibethinus HOM05D003723 ORTHO05D004306 1.2e-267 926.8 835 58.4
Sopen12g030290 Solanum pennellii HOM05D003723 ORTHO05D004306 1.3e-266 923.3 824 57.4
Peaxi162Scf00160g00521 Petunia axillaris HOM05D003723 ORTHO05D004306 2.8e-266 922.2 797 59.3
PGSC0003DMG400011543 Solanum tuberosum HOM05D003723 ORTHO05D004306 2.8e-266 922.2 825 57.5
Nitab4.5_0000497g0070 Nicotiana tabacum HOM05D003723 ORTHO05D004306 3.7e-266 921.8 837 57.5
Nitab4.5_0002314g0030 Nicotiana tabacum HOM05D003723 ORTHO05D004306 5.4e-265 917.9 828 57.2
Gohir.A02G089200 Gossypium hirsutum HOM05D003723 ORTHO05D004306 3.5e-264 915.2 832 56.5
Solyc12g088290.2 Solanum lycopersicum HOM05D003723 ORTHO05D004306 3.5e-264 915.2 824 56.8
AUR62022465 Chenopodium quinoa HOM05D003723 ORTHO05D004306 3.8e-263 911.8 832 56.7
HanXRQChr10g0292161 Helianthus annuus HOM05D003723 ORTHO05D004306 5.0e-263 911.4 810 59.0
AUR62043254 Chenopodium quinoa HOM05D003723 ORTHO05D004306 2.5e-262 909.1 827 56.3
CANSAT25G0987 Cannabis sativa HOM05D003723 ORTHO05D004306 4.2e-262 908.3 817 56.9
Lalb_Chr22g0355711 Lupinus albus HOM05D003723 ORTHO05D004306 2.8e-261 905.6 819 57.1
Nitab4.5_0009040g0020 Nicotiana tabacum HOM05D003723 ORTHO05D004306 2.8e-261 905.6 868 55.1
HanXRQChr10g0292141 Helianthus annuus HOM05D003723 ORTHO05D004306 5.7e-259 897.9 815 57.3
EL10Ac1g02364 Beta vulgaris HOM05D003723 ORTHO05D004306 7.5e-259 897.5 825 55.3
arahy.Tifrunner.gnm1.ann1.82WHW6 Arachis hypogaea HOM05D003723 ORTHO05D004306 2.2e-258 896.0 812 56.8
Peaxi162Scf00081g02729 Petunia axillaris HOM05D003723 ORTHO05D004306 6.3e-258 894.4 876 54.6
PGSC0003DMG401010623 Solanum tuberosum HOM05D003723 ORTHO05D004306 6.3e-258 894.4 816 57.1
Lj4C72T17 Lonicera japonica HOM05D003723 ORTHO05D004306 1.8e-257 892.9 822 56.0
Glyma.14G089042 Glycine max HOM05D003723 ORTHO05D004306 5.4e-257 891.3 824 56.3
Gohir.D02G112100 Gossypium hirsutum HOM05D003723 ORTHO05D004306 1.2e-256 890.2 833 55.8
Lalb_Chr14g0368121 Lupinus albus HOM05D003723 ORTHO05D004306 4.5e-256 888.3 818 56.2
Lj5g0007294 Lotus japonicus HOM05D003723 ORTHO05D004306 5.9e-256 887.9 814 56.6
Solyc04g077680.3 Solanum lycopersicum HOM05D003723 ORTHO05D004306 7.8e-256 887.5 815 56.4
VMungo0647G0070 Vigna mungo HOM05D003723 ORTHO05D004306 7.8e-256 887.5 821 56.6
Gorai.005G127000 Gossypium raimondii HOM05D003723 ORTHO05D004306 1.1e-254 883.6 861 54.2
Sopen04g031320 Solanum pennellii HOM05D003723 ORTHO05D004306 1.5e-254 883.2 817 56.3
Aqoxy3G00456 Aquilegia oxysepala HOM05D003723 ORTHO05D004306 3.6e-253 878.6 819 57.5
Oeu014279.1 Olea europaea HOM05D003723 ORTHO05D004306 1.0e-252 877.1 756 59.8
Sc02g0007980 Simmondsia chinensis HOM05D003723 ORTHO05D004306 1.4e-252 876.7 825 55.4
Glyma.17G233900 Glycine max HOM05D003723 ORTHO05D004306 6.8e-252 874.4 830 55.8
Phvul.001G028900 Phaseolus vulgaris HOM05D003723 ORTHO05D004306 6.8e-252 874.4 820 57.0
vmacro16900 Vaccinium macrocarpon HOM05D003723 ORTHO05D004306 1.5e-251 873.2 811 56.4
Manes.18G095200 Manihot esculenta HOM05D003723 ORTHO05D004306 2.6e-251 872.5 715 61.4
arahy.Tifrunner.gnm1.ann1.YU9IEB Arachis hypogaea HOM05D003723 ORTHO05D004306 4.4e-251 871.7 818 55.3
CSS0010741 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 4.4e-251 871.7 699 63.2
RcHm_v2.0_Chr6g0309831 Rosa chinensis HOM05D003723 ORTHO05D004306 3.7e-250 868.6 826 55.7
FvH4_2g32880 Fragaria vesca HOM05D003723 ORTHO05D004306 1.8e-249 866.3 825 55.6
COL.COLO4_29256 Corchorus olitorius HOM05D003723 ORTHO05D004306 4.1e-249 865.1 821 56.8
FAN24G1723 Fragaria x ananassa HOM05D003723 ORTHO05D004306 4.1e-249 865.1 825 55.6
PSO541G5768 Papaver somniferum HOM05D003723 ORTHO05D004306 4.1e-249 865.1 810 56.2
FAN20G3047 Fragaria x ananassa HOM05D003723 ORTHO05D004306 5.9e-248 861.3 824 55.1
FAN15G1506 Fragaria x ananassa HOM05D003723 ORTHO05D004306 7.8e-248 860.9 825 54.9
Hma1.2p1_0210F.1_g089420 Hydrangea macrophylla HOM05D003723 ORTHO05D004306 3.9e-247 858.6 758 59.5
Hund05292 Selenicereus undatus HOM05D003723 ORTHO05D004306 1.1e-244 850.5 739 57.9
SalBow2G1921 Salvia bowleyana HOM05D003723 ORTHO05D004306 1.4e-244 850.1 777 57.1
PSO017G5808 Papaver somniferum HOM05D003723 ORTHO05D004306 6.8e-244 847.8 812 55.5
DCAR_012822 Daucus carota HOM05D003723 ORTHO05D004306 5.8e-243 844.7 821 54.7
FAN27G2988 Fragaria x ananassa HOM05D003723 ORTHO05D004306 6.6e-239 831.2 825 54.3
GSVIVG01009321001 Vitis vinifera HOM05D003723 ORTHO05D004306 1.9e-238 829.7 817 54.0
SGA_v2.0_scaffold152G36813 Striga asiatica HOM05D003723 ORTHO05D004306 3.3e-238 828.9 826 53.3
Gohir.A10G151900 Gossypium hirsutum HOM05D003723 ORTHO05D004306 1.6e-237 826.6 833 53.7
Ah.05g167030 Amaranthus hybridus HOM05D003723 ORTHO05D004306 8.3e-234 814.3 762 54.9
DCAR_004814 Daucus carota HOM05D003723 ORTHO05D004306 4.1e-233 812.0 860 52.4
Sed0011873 Sechium edule HOM05D003723 ORTHO05D004306 7.1e-233 811.2 727 58.3
CDE07G0463 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 6.2e-229 798.1 766 54.4
Zm00001eb056350 Zea mays HOM05D003723 ORTHO05D004306 9.9e-227 790.8 827 51.3
Os03g0735100 Oryza sativa ssp. japonica HOM05D003723 ORTHO05D004306 1.6e-224 783.5 822 51.5
Psat6g017680 Pisum sativum HOM05D003723 ORTHO05D004306 3.5e-224 782.3 814 52.0
Zm00001eb215430 Zea mays HOM05D003723 ORTHO05D004306 1.7e-223 780.0 824 51.1
Ca_13209_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 9.6e-222 774.2 811 50.3
ATR0739G177 Amborella trichopoda HOM05D003723 ORTHO05D004306 6.9e-220 768.1 834 51.0
unitig_0.g1045 Utricularia gibba HOM05D003723 ORTHO05D004306 2.0e-219 766.5 830 49.2
Actinidia10210 Actinidia chinensis HOM05D003723 ORTHO05D004306 1.6e-216 756.9 631 61.5
TPR.G12983 Trifolium pratense HOM05D003723 ORTHO05D004306 7.8e-216 754.6 818 50.1
HPP92_003353 Vanilla planifolia HOM05D003723 ORTHO05D004306 1.1e-214 750.7 696 56.5
TPR.G32238 Trifolium pratense HOM05D003723 ORTHO05D004306 5.4e-209 731.9 832 49.6
Medtr1g017880 Medicago truncatula HOM05D003723 ORTHO05D004306 3.9e-207 725.7 820 48.2
Medtr8g014080 Medicago truncatula HOM05D003723 ORTHO05D004306 9.6e-206 721.1 813 49.7
Lsat_1_v5_gn_1_1120 Lactuca sativa HOM05D003723 ORTHO05D004306 1.5e-171 607.4 581 56.5
Ca_23258_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 6.3e-165 585.5 705 47.5
Mapoly0027s0127 Marchantia polymorpha HOM05D003723 ORTHO05D004306 1.3e-162 577.8 887 38.7
SMO367G0860 Selaginella moellendorffii HOM05D003723 ORTHO05D004306 3.3e-158 563.1 836 38.5
Pp3c22_14490 Physcomitrium patens HOM05D003723 ORTHO05D004306 4.4e-158 562.8 907 38.1
Pp3c19_13580 Physcomitrium patens HOM05D003723 ORTHO05D004306 3.1e-148 530.0 913 36.8
Dinv39214 Davidia involucrata HOM05D003723 ORTHO05D004306 5.6e-137 492.7 424 58.7
CBR_g57871 Chara braunii HOM05D003723 ORTHO05D004306 8.6e-130 468.8 906 33.8
CDE04G2329 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 1.6e-128 464.5 406 59.4
DCAR_032227 Daucus carota HOM05D003723 ORTHO05D004306 2.4e-116 424.1 445 52.8
AagrBONN_evm.TU.Sc2ySwM_344.864 Anthoceros agrestis HOM05D003723 ORTHO05D004306 2.3e-114 417.5 624 39.7
Oeu036976.1 Olea europaea HOM05D003723 ORTHO05D004306 2.6e-110 404.1 320 63.8
SEGI_24646 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 1.1e-100 372.1 513 42.9
Actinidia19301 Actinidia chinensis HOM05D003723 ORTHO05D004306 6.2e-96 356.3 296 61.1
SEGI_10786 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 7.1e-84 316.2 305 53.1
Lsat_1_v5_gn_1_440 Lactuca sativa HOM05D003723 ORTHO05D004306 2.4e-79 301.2 258 58.9
Pp3c18_6690 Physcomitrium patens HOM05D003723 ORTHO05D004306 5.3e-79 300.1 653 34.8
Actinidia19302 Actinidia chinensis HOM05D003723 ORTHO05D004306 5.7e-73 280.0 257 56.0
MCO10G249 Micromonas commoda HOM05D003723 ORTHO05D004306 8.2e-64 249.6 921 25.3
Dinv39213 Davidia involucrata HOM05D003723 ORTHO05D004306 1.5e-62 245.4 156 75.6
Lsat_1_v5_gn_0_45940 Lactuca sativa HOM05D003723 ORTHO05D004306 1.5e-62 245.4 220 55.9
DCAR_032226 Daucus carota HOM05D003723 ORTHO05D004306 6.3e-56 223.4 260 48.5
Oeu053086.3 Olea europaea HOM05D003723 ORTHO05D004306 1.1e-55 222.6 265 50.9
TAR376G0468 Trochodendron aralioides HOM05D003723 ORTHO05D004306 1.2e-46 192.6 118 79.7
Cre13.g606850 Chlamydomonas reinhardtii HOM05D003723 ORTHO05D004306 3.5e-46 191.0 882 24.5
PRCOL_00004412 Prasinoderma coloniale HOM05D003723 ORTHO05D004306 1.4e-42 179.1 455 30.8
Zm00001eb382220 Zea mays HOM05D002544 ORTHO05D007856 6.8e-42 176.8 196 47.4
HanXRQChr14g0443971 Helianthus annuus HOM05D003723 ORTHO05D004306 4.4e-41 174.1 174 54.6
Zm00001eb280470 Zea mays HOM05D003723 ORTHO05D004306 7.5e-41 173.3 261 40.6
CDE04G2756 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 8.8e-34 149.8 188 46.3
TAR376G0365 Trochodendron aralioides HOM05D003723 ORTHO05D004306 8.3e-32 143.3 100 67.0
TAR376G0760 Trochodendron aralioides HOM05D003723 ORTHO05D004306 2.3e-29 135.2 101 63.4
Migut.N02791 Erythranthe guttata HOM05D003723 ORTHO05D004306 3.6e-27 127.9 99 62.6
Cfa027112 Carpinus fangiana HOM05D003723 ORTHO05D004306 2.0e-25 122.1 571 22.8
Psat7g031120 Pisum sativum HOM05D003723 ORTHO05D004306 4.6e-22 110.9 94 61.7
HanXRQChr15g0495401 Helianthus annuus HOM05D003723 ORTHO05D004306 6.4e-16 90.5 99 44.4
CSS0002287 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 4.6e-14 84.3 104 39.4
CSS0021932 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 2.3e-13 82.0 104 39.4
CSS0044410 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 2.3e-13 82.0 104 39.4
CSS0047227 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 9.5e-12 76.6 104 37.5
CSS0041779 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 6.2e-11 73.9 104 38.5
CAN.G400.11 Capsicum annuum HOM05D002670 ORTHO05D000002 1.9e-07 62.4 112 37.5


User provided reference genes

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