Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p62010 Brassica napus HOM05D003084 ORTHO05D003580 1.8e-144 516.2 314 100.0
BolC3t18459H Brassica oleracea HOM05D003084 ORTHO05D003580 4.5e-135 485.0 298 99.3
A06p30960 Brassica napus HOM05D003084 ORTHO05D003580 4.3e-77 292.4 274 69.3
BraA06t26038Z Brassica rapa HOM05D003084 ORTHO05D003580 7.3e-77 291.6 266 69.9
Sp2g27330 Schrenkiella parvula HOM05D003084 ORTHO05D003580 2.6e-74 283.1 237 73.8
BcaB04g19962 Brassica carinata HOM05D003084 ORTHO05D003580 1.7e-73 280.4 241 73.9
A09p08590 Brassica napus HOM05D003084 ORTHO05D003580 7.8e-71 271.6 222 74.8
C09p09710 Brassica napus HOM05D003084 ORTHO05D003580 3.0e-70 269.6 221 74.7
BolC9t53882H Brassica oleracea HOM05D003084 ORTHO05D003580 5.1e-70 268.9 221 74.7
BraA09t36508Z Brassica rapa HOM05D003084 ORTHO05D003580 6.6e-70 268.5 224 73.7
Thhalv10005618m.g Eutrema salsugineum HOM05D003084 ORTHO05D003580 1.2e-68 264.2 163 82.8
AL8G41630 Arabidopsis lyrata HOM05D003084 ORTHO05D003580 2.8e-68 263.1 228 71.1
CARHR278180 Cardamine hirsuta HOM05D003084 ORTHO05D003580 1.4e-67 260.8 163 82.2
AT5G64270 Arabidopsis thaliana HOM05D003084 ORTHO05D003580 1.5e-66 257.3 298 62.1
Aa31LG1G17630 Aethionema arabicum HOM05D003084 ORTHO05D003580 7.6e-66 255.0 163 81.0
Carub.0008s2506 Capsella rubella HOM05D003084 ORTHO05D003580 3.0e-62 243.0 225 66.2
THA.LOC104799861 Tarenaya hassleriana HOM05D003084 ORTHO05D003580 5.4e-56 222.2 163 70.6
Thhalv10024248m.g Eutrema salsugineum HOM05D003084 ORTHO05D003580 9.9e-50 201.4 225 63.1
Ciclev10010658m.g Citrus clementina HOM05D003084 ORTHO05D003580 1.8e-46 190.7 217 57.1
Lalb_Chr15g0090381 Lupinus albus HOM05D003084 ORTHO05D003580 1.8e-46 190.7 284 46.8
COL.COLO4_32309 Corchorus olitorius HOM05D003084 ORTHO05D003580 2.3e-46 190.3 220 59.1
Eucgr.I02637 Eucalyptus grandis HOM05D003084 ORTHO05D003580 3.0e-46 189.9 295 48.8
Haze_07018 Corylus avellana HOM05D003084 ORTHO05D003580 3.9e-46 189.5 291 48.1
ClCG10G009340 Citrullus lanatus HOM05D003084 ORTHO05D003580 8.7e-46 188.3 230 58.7
Lalb_Chr18g0060491 Lupinus albus HOM05D003084 ORTHO05D003580 1.5e-45 187.6 284 45.8
Haze_17408 Corylus avellana HOM05D003084 ORTHO05D003580 4.3e-45 186.0 161 63.4
Gohir.D12G016100 Gossypium hirsutum HOM05D003084 ORTHO05D003580 4.3e-45 186.0 161 64.0
Gorai.008G016300 Gossypium raimondii HOM05D003084 ORTHO05D003580 4.3e-45 186.0 161 64.0
VMungo0540G2012 Vigna mungo HOM05D003084 ORTHO05D003580 4.3e-45 186.0 229 55.0
Manes.10G104400 Manihot esculenta HOM05D003084 ORTHO05D003580 5.6e-45 185.7 218 57.3
Gohir.A12G015800 Gossypium hirsutum HOM05D003084 ORTHO05D003580 1.3e-44 184.5 161 63.4
SEGI_22402 Sequoiadendron giganteum HOM05D003084 ORTHO05D003580 1.3e-44 184.5 222 50.9
MBI04_g36083_MAGBIO Magnolia biondii HOM05D003084 ORTHO05D003580 2.8e-44 183.3 228 50.0
SHI54885 Sapria himalayana HOM05D003084 ORTHO05D003580 2.8e-44 183.3 209 58.9
Nn4g23295 Nelumbo nucifera HOM05D003084 ORTHO05D003580 3.7e-44 183.0 228 51.3
Sc13g0006780 Simmondsia chinensis HOM05D003084 ORTHO05D003580 3.7e-44 183.0 226 56.2
CiPaw.16G001600 Carya illinoinensis HOM05D003084 ORTHO05D003580 6.2e-44 182.2 219 56.6
CiPaw.16G001700 Carya illinoinensis HOM05D003084 ORTHO05D003580 6.2e-44 182.2 219 56.6
Lj3P547T47 Lonicera japonica HOM05D003084 ORTHO05D003580 6.2e-44 182.2 289 58.1
TAR629G3161 Trochodendron aralioides HOM05D003084 ORTHO05D003580 1.1e-43 181.4 229 49.8
Duzib052G0048 Durio zibethinus HOM05D003084 ORTHO05D003580 1.4e-43 181.0 161 62.1
MD17G1162000 Malus domestica HOM05D003084 ORTHO05D003580 1.4e-43 181.0 228 49.1
MD17G1162100 Malus domestica HOM05D003084 ORTHO05D003580 1.4e-43 181.0 228 49.1
Thecc.02G134200 Theobroma cacao HOM05D003084 ORTHO05D003580 1.8e-43 180.6 161 61.5
Sabra17G0037200 Salix brachista HOM05D003084 ORTHO05D003580 2.4e-43 180.3 218 50.5
Sabra17G0042500 Salix brachista HOM05D003084 ORTHO05D003580 2.4e-43 180.3 218 50.5
MELO3C024822.2 Cucumis melo HOM05D003084 ORTHO05D003580 3.1e-43 179.9 230 56.1
CsaV3_4G009520 Cucumis sativus L. HOM05D003084 ORTHO05D003580 9.0e-43 178.3 230 55.7
Lj3P537T27 Lonicera japonica HOM05D003084 ORTHO05D003580 9.0e-43 178.3 225 53.8
Glyma.13G229200 Glycine max HOM05D003084 ORTHO05D003580 1.2e-42 177.9 163 58.3
Glyma.15G083300 Glycine max HOM05D003084 ORTHO05D003580 1.2e-42 177.9 163 58.3
QL12p003834 Quercus lobata HOM05D003084 ORTHO05D003580 1.2e-42 177.9 160 61.9
FAN20G2309 Fragaria x ananassa HOM05D003084 ORTHO05D003580 2.0e-42 177.2 221 56.1
FAN27G2201 Fragaria x ananassa HOM05D003084 ORTHO05D003580 2.0e-42 177.2 221 56.1
CSS0001529 Camellia sinensis var. sinensis HOM05D003084 ORTHO05D003580 2.6e-42 176.8 232 54.7
RcHm_v2.0_Chr6g0275901 Rosa chinensis HOM05D003084 ORTHO05D003580 2.6e-42 176.8 219 55.3
FvH4_2g14010 Fragaria vesca HOM05D003084 ORTHO05D003580 3.4e-42 176.4 217 54.8
Potri.017G050800 Populus trichocarpa HOM05D003084 ORTHO05D003580 3.4e-42 176.4 221 48.9
DCAR_026599 Daucus carota HOM05D003084 ORTHO05D003580 4.5e-42 176.0 221 55.7
Dinv23905 Davidia involucrata HOM05D003084 ORTHO05D003580 4.5e-42 176.0 225 56.9
FAN15G1682 Fragaria x ananassa HOM05D003084 ORTHO05D003580 7.6e-42 175.3 221 55.7
FAN24G1613 Fragaria x ananassa HOM05D003084 ORTHO05D003580 1.0e-41 174.9 218 54.1
Phvul.006G175600 Phaseolus vulgaris HOM05D003084 ORTHO05D003580 1.0e-41 174.9 163 56.4
vmacro07762 Vaccinium macrocarpon HOM05D003084 ORTHO05D003580 1.3e-41 174.5 221 55.7
CANSAT01G3215 Cannabis sativa HOM05D003084 ORTHO05D003580 2.2e-41 173.7 227 49.3
CDE02G2072 Ceratophyllum demersum HOM05D003084 ORTHO05D003580 3.8e-41 172.9 224 50.9
Dinv23897 Davidia involucrata HOM05D003084 ORTHO05D003580 3.8e-41 172.9 226 56.2
TWI23G0442 Tripterygium wilfordii HOM05D003084 ORTHO05D003580 3.8e-41 172.9 216 55.6
arahy.Tifrunner.gnm1.ann1.6856EH Arachis hypogaea HOM05D003084 ORTHO05D003580 4.9e-41 172.6 223 53.4
Prupe.8G065000 Prunus persica HOM05D003084 ORTHO05D003580 4.9e-41 172.6 235 54.5
Sed0019948 Sechium edule HOM05D003084 ORTHO05D003580 1.4e-40 171.0 290 46.6
PGR142G4455 Punica granatum HOM05D003084 ORTHO05D003580 3.2e-40 169.9 163 57.7
Actinidia38769 Actinidia chinensis HOM05D003084 ORTHO05D003580 4.2e-40 169.5 164 59.8
AUR62004235 Chenopodium quinoa HOM05D003084 ORTHO05D003580 5.5e-40 169.1 230 52.6
Actinidia28117 Actinidia chinensis HOM05D003084 ORTHO05D003580 7.1e-40 168.7 164 59.1
TAR636G3251 Trochodendron aralioides HOM05D003084 ORTHO05D003580 7.1e-40 168.7 198 51.5
CDE09G0434 Ceratophyllum demersum HOM05D003084 ORTHO05D003580 1.6e-39 167.5 223 53.8
TWI59G0520 Tripterygium wilfordii HOM05D003084 ORTHO05D003580 1.6e-39 167.5 160 58.1
arahy.Tifrunner.gnm1.ann1.PVIH4H Arachis hypogaea HOM05D003084 ORTHO05D003580 3.5e-39 166.4 222 53.2
EL10Ac1g00935 Beta vulgaris HOM05D003084 ORTHO05D003580 6.0e-39 165.6 233 46.4
AUR62013613 Chenopodium quinoa HOM05D003084 ORTHO05D003580 1.8e-38 164.1 233 50.2
Ca_00144_v3 Cicer arietinum L. HOM05D003084 ORTHO05D003580 2.3e-38 163.7 217 53.5
MBI14_g36930_MAGBIO Magnolia biondii HOM05D003084 ORTHO05D003580 3.9e-38 162.9 164 56.1
Lj6g0000948 Lotus japonicus HOM05D003084 ORTHO05D003580 8.7e-38 161.8 223 48.4
Psat4g019320 Pisum sativum HOM05D003084 ORTHO05D003580 8.7e-38 161.8 213 55.9
arahy.Tifrunner.gnm1.ann1.4W8ZMG Arachis hypogaea HOM05D003084 ORTHO05D003580 1.1e-37 161.4 223 52.0
Mapoly0134s0023 Marchantia polymorpha HOM05D003084 ORTHO05D003580 1.1e-37 161.4 244 50.0
RhsimUnG0019800 Rhododendron simsii HOM05D003084 ORTHO05D003580 1.1e-37 161.4 226 52.7
PSO832G0894 Papaver somniferum HOM05D003084 ORTHO05D003580 2.5e-37 160.2 233 45.1
Ah.05g172970 Amaranthus hybridus HOM05D003084 ORTHO05D003580 7.4e-37 158.7 227 46.3
Ah.05g175190 Amaranthus hybridus HOM05D003084 ORTHO05D003580 7.4e-37 158.7 227 46.3
Aqoxy2G00351 Aquilegia oxysepala HOM05D003084 ORTHO05D003580 9.6e-37 158.3 236 47.9
CSS0033238 Camellia sinensis var. sinensis HOM05D003084 ORTHO05D003580 9.6e-37 158.3 164 56.7
Hma1.2p1_0996F.1_g245870 Hydrangea macrophylla HOM05D003084 ORTHO05D003580 2.1e-36 157.1 234 52.1
MSTRG.6294 Avicennia marina HOM05D003084 ORTHO05D003580 2.8e-36 156.8 288 45.8
Potri.001G310900 Populus trichocarpa HOM05D003084 ORTHO05D003580 3.7e-36 156.4 215 47.4
Lsat_1_v5_gn_6_59920 Lactuca sativa HOM05D003084 ORTHO05D003580 1.4e-35 154.5 227 45.4
COL.COLO4_32308 Corchorus olitorius HOM05D003084 ORTHO05D003580 2.4e-35 153.7 217 53.5
Sabra16G0196500 Salix brachista HOM05D003084 ORTHO05D003580 6.9e-35 152.1 215 48.4
HanXRQChr02g0058761 Helianthus annuus HOM05D003084 ORTHO05D003580 2.6e-34 150.2 225 50.7
Dinv04117 Davidia involucrata HOM05D003084 ORTHO05D003580 3.4e-34 149.8 164 54.3
GSVIVG01025852001 Vitis vinifera HOM05D003084 ORTHO05D003580 7.6e-34 148.7 259 44.0
ECA233G4363 Erigeron canadensis HOM05D003084 ORTHO05D003580 2.9e-33 146.7 222 45.0
HanXRQChr07g0185681 Helianthus annuus HOM05D003084 ORTHO05D003580 6.5e-33 145.6 271 43.5
PSO063G3636 Papaver somniferum HOM05D003084 ORTHO05D003580 1.4e-32 144.4 237 46.4
PGSC0003DMG400028106 Solanum tuberosum HOM05D003084 ORTHO05D003580 1.9e-32 144.1 218 47.7
Nitab4.5_0003286g0010 Nicotiana tabacum HOM05D003084 ORTHO05D003580 4.2e-32 142.9 221 50.2
CBR_g38933 Chara braunii HOM05D003084 ORTHO05D003580 5.5e-32 142.5 311 37.3
Sopen10g031590 Solanum pennellii HOM05D003084 ORTHO05D003580 5.5e-32 142.5 218 47.2
CBR_g21841 Chara braunii HOM05D003084 ORTHO05D003580 1.6e-31 141.0 250 42.0
Os02g0146400 Oryza sativa ssp. japonica HOM05D003084 ORTHO05D003580 1.6e-31 141.0 245 46.1
Nitab4.5_0000062g0290 Nicotiana tabacum HOM05D003084 ORTHO05D003580 2.7e-31 140.2 221 49.8
CAN.G128.100 Capsicum annuum HOM05D003084 ORTHO05D003580 6.1e-31 139.0 223 44.4
AagrBONN_evm.TU.Sc2ySwM_362.2841 Anthoceros agrestis HOM05D003084 ORTHO05D003580 3.0e-30 136.7 244 44.7
Cc02_g31230 Coffea canephora HOM05D003084 ORTHO05D003580 6.7e-30 135.6 210 49.5
Cc09_g09140 Coffea canephora HOM05D003084 ORTHO05D003580 6.7e-30 135.6 210 49.5
Zm00001eb232170 Zea mays HOM05D003084 ORTHO05D003580 6.7e-30 135.6 242 45.0
SGA_v2.0_scaffold106G30555 Striga asiatica HOM05D003084 ORTHO05D003580 1.1e-29 134.8 262 41.6
Peaxi162Scf00153g00138 Petunia axillaris HOM05D003084 ORTHO05D003580 1.9e-29 134.0 220 48.2
Oeu060755.1 Olea europaea HOM05D003084 ORTHO05D003580 1.6e-28 131.0 215 47.9
Medtr2g009110 Medicago truncatula HOM05D003084 ORTHO05D003580 3.7e-28 129.8 227 48.5
CSS0000201 Camellia sinensis var. sinensis HOM05D003084 ORTHO05D003580 2.4e-27 127.1 142 54.2
Migut.J01608 Erythranthe guttata HOM05D003084 ORTHO05D003580 2.4e-27 127.1 220 40.0
Pp3c11_14450 Physcomitrium patens HOM05D003084 ORTHO05D003580 2.4e-27 127.1 242 43.0
Sc25g0002420 Simmondsia chinensis HOM05D003084 ORTHO05D003580 4.1e-27 126.3 198 49.5
Zm00001eb208060 Zea mays HOM05D003084 ORTHO05D003580 6.9e-27 125.6 242 43.8
Os02g0147300 Oryza sativa ssp. japonica HOM05D003084 ORTHO05D003580 2.6e-26 123.6 173 43.4
SMO134G0059 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 1.3e-25 121.3 226 45.1
HPP92_010381 Vanilla planifolia HOM05D003084 ORTHO05D003580 6.5e-25 119.0 227 45.4
Aqoxy3G02504 Aquilegia oxysepala HOM05D003084 ORTHO05D003580 1.4e-24 117.9 262 40.8
FvH4_4g00110 Fragaria vesca HOM05D003084 ORTHO05D003580 3.2e-24 116.7 126 50.0
Actinidia38788 Actinidia chinensis HOM05D003084 ORTHO05D003580 9.4e-24 115.2 164 45.1
Psat1g216360 Pisum sativum HOM05D003084 ORTHO05D003580 2.1e-23 114.0 226 38.9
Carub.0013s0010 Capsella rubella HOM05D003084 ORTHO05D003580 1.0e-22 111.7 212 42.5
Rhsim04G0090100 Rhododendron simsii HOM05D003084 ORTHO05D003580 2.0e-21 107.5 184 41.3
AUR62032335 Chenopodium quinoa HOM05D003084 ORTHO05D003580 2.6e-21 107.1 169 46.7
Rhsim04G0095500 Rhododendron simsii HOM05D003084 ORTHO05D003580 5.7e-21 105.9 183 41.5
SMO361G0653 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 5.7e-21 105.9 210 38.1
SMO361G0072 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 7.4e-21 105.5 199 38.7
Cre12.g494100 Chlamydomonas reinhardtii HOM05D003084 ORTHO05D003580 1.7e-20 104.4 227 42.3
vmacro02485 Vaccinium macrocarpon HOM05D003084 ORTHO05D003580 2.0e-18 97.4 227 41.4
AUR62007850 Chenopodium quinoa HOM05D003084 ORTHO05D003580 1.4e-16 91.3 143 51.7
Rhsim04G0092700 Rhododendron simsii HOM05D003084 ORTHO05D003580 4.2e-16 89.7 164 43.3
arahy.Tifrunner.gnm1.ann1.8HD4Y1 Arachis hypogaea HOM05D003084 ORTHO05D003580 1.2e-15 88.2 108 50.0
Oeu052036.1 Olea europaea HOM05D003084 ORTHO05D003580 1.8e-14 84.3 111 45.0
unitig_744.g24164 Utricularia gibba HOM05D003084 ORTHO05D003580 4.4e-13 79.7 216 34.7
RhsimUnG0029100 Rhododendron simsii HOM05D003084 ORTHO05D003580 1.2e-10 71.6 164 36.0
Pp3c7_19180 Physcomitrium patens HOM05D003084 ORTHO05D003580 5.9e-10 69.3 113 43.4
PRCOL_00002641 Prasinoderma coloniale HOM05D003084 ORTHO05D003580 3.8e-09 66.6 181 31.5
Migut.D02560 Erythranthe guttata HOM05D003084 ORTHO05D003580 6.7e-06 55.8 84 41.7


User provided reference genes

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