Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p54440 Brassica napus HOM05D005801 ORTHO05D041341 1.9e-89 332.4 163 100.0
BolC3t17730H Brassica oleracea HOM05D005801 ORTHO05D041341 1.9e-89 332.4 163 100.0
BcaC04g20246 Brassica carinata HOM05D005801 ORTHO05D016715 3.6e-19 99.0 59 81.4
BolC9t57462H Brassica oleracea HOM05D005801 ORTHO05D016715 3.6e-19 99.0 59 81.4
C09p45950 Brassica napus HOM05D005801 ORTHO05D016715 6.1e-19 98.2 59 79.7
BcaC03g16316 Brassica carinata HOM05D005801 ORTHO05D016715 6.8e-18 94.7 59 76.3
Thhalv10002296m.g Eutrema salsugineum HOM05D005801 ORTHO05D008555 2.6e-17 92.8 56 78.6
Sp3g33210 Schrenkiella parvula HOM05D005801 ORTHO05D008555 2.6e-17 92.8 56 78.6
BcaC04g22492 Brassica carinata HOM05D005801 ORTHO05D016715 3.4e-17 92.4 108 56.5
C03p74890 Brassica napus HOM05D013368 ORTHO05D031982 4.4e-17 92.0 99 54.5
A07p26140 Brassica napus HOM05D005801 ORTHO05D013666 2.2e-16 89.7 109 51.4
AL3G48350 Arabidopsis lyrata HOM05D005801 ORTHO05D008555 2.9e-16 89.4 56 75.0
AT2G19870 Arabidopsis thaliana HOM05D005801 ORTHO05D008555 2.9e-16 89.4 56 75.0
CARHR110310 Cardamine hirsuta HOM05D005801 ORTHO05D008555 2.9e-16 89.4 56 75.0
BcaC06g36648 Brassica carinata HOM05D005801 ORTHO05D008555 3.7e-16 89.0 56 75.0
C07p01810 Brassica napus HOM05D005801 ORTHO05D008555 3.7e-16 89.0 56 75.0
BolC7t40588H Brassica oleracea HOM05D005801 ORTHO05D008555 3.7e-16 89.0 56 75.0
Carub.0003s3414 Capsella rubella HOM05D005801 ORTHO05D008555 6.4e-16 88.2 56 73.2
BcaB03g16775 Brassica carinata HOM05D005801 ORTHO05D008555 8.3e-16 87.8 56 73.2
A07p00840 Brassica napus HOM05D005801 ORTHO05D008555 8.3e-16 87.8 56 73.2
BraA07t27882Z Brassica rapa HOM05D005801 ORTHO05D008555 8.3e-16 87.8 56 73.2
BraA07t30260Z Brassica rapa HOM05D005801 ORTHO05D013666 1.1e-15 87.4 109 50.5
Prupe.7G219800 Prunus persica HOM05D005801 ORTHO05D008555 2.4e-15 86.3 56 71.4
MD02G1065700 Malus domestica HOM05D005801 ORTHO05D008555 3.2e-15 85.9 56 69.6
THA.LOC104814572 Tarenaya hassleriana HOM05D005801 ORTHO05D008555 4.1e-15 85.5 56 71.4
Duzib132G0722 Durio zibethinus HOM05D005801 ORTHO05D008555 1.2e-14 84.0 56 69.6
Duzib150G1339 Durio zibethinus HOM05D005801 ORTHO05D008555 1.2e-14 84.0 56 69.6
Gorai.001G010100 Gossypium raimondii HOM05D005801 ORTHO05D008555 1.2e-14 84.0 56 69.6
Rhsim03G0236600 Rhododendron simsii HOM05D005801 ORTHO05D008555 1.2e-14 84.0 56 67.9
BcaNung00771 Brassica carinata HOM05D013368 ORTHO05D031982 1.6e-14 83.6 105 51.4
FvH4_1g06150 Fragaria vesca HOM05D005801 ORTHO05D008555 1.6e-14 83.6 56 69.6
FAN19G1715 Fragaria x ananassa HOM05D005801 ORTHO05D008555 1.6e-14 83.6 56 69.6
FAN23G0343 Fragaria x ananassa HOM05D005801 ORTHO05D008555 1.6e-14 83.6 56 69.6
FAN26G1273 Fragaria x ananassa HOM05D005801 ORTHO05D008555 1.6e-14 83.6 56 69.6
Nitab4.5_0000066g0110 Nicotiana tabacum HOM05D005801 ORTHO05D008555 1.6e-14 83.6 56 66.1
RcHm_v2.0_Chr2g0091911 Rosa chinensis HOM05D005801 ORTHO05D008555 1.6e-14 83.6 56 69.6
Thecc.09G100600 Theobroma cacao HOM05D005801 ORTHO05D008555 1.6e-14 83.6 56 69.6
Nitab4.5_0001703g0010 Nicotiana tabacum HOM05D005801 ORTHO05D008555 2.0e-14 83.2 56 64.3
Peaxi162Scf00720g00044 Petunia axillaris HOM05D005801 ORTHO05D008555 2.0e-14 83.2 56 71.4
Gohir.A07G009500 Gossypium hirsutum HOM05D005801 ORTHO05D008555 2.7e-14 82.8 56 67.9
Gohir.D07G009800 Gossypium hirsutum HOM05D005801 ORTHO05D008555 2.7e-14 82.8 56 67.9
Lj4g0016627 Lotus japonicus HOM05D005801 ORTHO05D008555 2.7e-14 82.8 56 67.9
MBI04_g34406_MAGBIO Magnolia biondii HOM05D005801 ORTHO05D008555 2.7e-14 82.8 56 66.1
Actinidia32650 Actinidia chinensis HOM05D005801 ORTHO05D008555 3.5e-14 82.4 56 67.9
FAN28G2516 Fragaria x ananassa HOM05D005801 ORTHO05D008555 3.5e-14 82.4 56 67.9
SalBow1G2797 Salvia bowleyana HOM05D005801 ORTHO05D008555 3.5e-14 82.4 56 69.6
vmacro06253 Vaccinium macrocarpon HOM05D005801 ORTHO05D008555 3.5e-14 82.4 56 67.9
Psat7g016720 Pisum sativum HOM05D005801 ORTHO05D008555 4.6e-14 82.0 56 66.1
Lalb_Chr05g0223241 Lupinus albus HOM05D005801 ORTHO05D008555 6.0e-14 81.6 56 66.1
Medtr8g102480 Medicago truncatula HOM05D005801 ORTHO05D008555 7.8e-14 81.3 55 67.3
Oeu053186.1 Olea europaea HOM05D005801 ORTHO05D008555 7.8e-14 81.3 56 66.1
TWI63G0976 Tripterygium wilfordii HOM05D005801 ORTHO05D008555 7.8e-14 81.3 56 67.9
GSVIVG01015302001 Vitis vinifera HOM05D005801 ORTHO05D008555 7.8e-14 81.3 56 64.3
BcaC01g03242 Brassica carinata HOM05D013368 ORTHO05D091529 1.0e-13 80.9 106 50.0
BolC7t43482H Brassica oleracea HOM05D013368 ORTHO05D031982 1.0e-13 80.9 106 50.0
CANSAT21G1751 Cannabis sativa HOM05D005801 ORTHO05D008555 1.0e-13 80.9 56 64.3
Eucgr.C00997 Eucalyptus grandis HOM05D005801 ORTHO05D008555 1.0e-13 80.9 56 66.1
Solyc05g017990.4 Solanum lycopersicum HOM05D005801 ORTHO05D008555 1.0e-13 80.9 56 64.3
Sopen05g014540 Solanum pennellii HOM05D005801 ORTHO05D008555 1.0e-13 80.9 56 64.3
PGSC0003DMG400038162 Solanum tuberosum HOM05D005801 ORTHO05D008555 1.0e-13 80.9 56 64.3
TAR636G1320 Trochodendron aralioides HOM05D005801 ORTHO05D008555 1.0e-13 80.9 56 64.3
MSTRG.10602 Avicennia marina HOM05D005801 ORTHO05D008555 1.3e-13 80.5 56 66.1
CSS0008146 Camellia sinensis var. sinensis HOM05D005801 ORTHO05D008555 1.3e-13 80.5 56 66.1
Phvul.002G308600 Phaseolus vulgaris HOM05D005801 ORTHO05D008555 1.3e-13 80.5 56 66.1
VMungo0251G1949 Vigna mungo HOM05D005801 ORTHO05D008555 1.3e-13 80.5 56 66.1
arahy.Tifrunner.gnm1.ann1.BF4XTR Arachis hypogaea HOM05D005801 ORTHO05D008555 1.7e-13 80.1 56 66.1
FAN19G0317 Fragaria x ananassa HOM05D005801 ORTHO05D008555 1.7e-13 80.1 56 66.1
CiPaw.04G157900 Carya illinoinensis HOM05D005801 ORTHO05D008555 3.0e-13 79.3 56 64.3
Dinv36686 Davidia involucrata HOM05D005801 ORTHO05D008555 3.0e-13 79.3 56 64.3
QL02p041581 Quercus lobata HOM05D005801 ORTHO05D008555 3.0e-13 79.3 56 64.3
CAN.G370.29 Capsicum annuum HOM05D005801 ORTHO05D008555 3.9e-13 79.0 56 62.5
COL.COLO4_34743 Corchorus olitorius HOM05D005801 ORTHO05D008555 3.9e-13 79.0 56 64.3
Aa31LG8G16820 Aethionema arabicum HOM05D005801 ORTHO05D008555 5.0e-13 78.6 95 45.3
Cc06_g10480 Coffea canephora HOM05D005801 ORTHO05D008555 5.0e-13 78.6 56 62.5
Sc18g0001500 Simmondsia chinensis HOM05D005801 ORTHO05D008555 5.0e-13 78.6 55 65.5
Ca_17365_v3 Cicer arietinum L. HOM05D005801 ORTHO05D008555 6.6e-13 78.2 56 64.3
Cfa003179 Carpinus fangiana HOM05D005801 ORTHO05D008555 8.6e-13 77.8 56 62.5
CDE04G1187 Ceratophyllum demersum HOM05D005801 ORTHO05D008555 8.6e-13 77.8 56 60.7
Aqoxy7G01401 Aquilegia oxysepala HOM05D005801 ORTHO05D008555 1.1e-12 77.4 56 60.7
Manes.16G108700 Manihot esculenta HOM05D005801 ORTHO05D008555 1.1e-12 77.4 56 62.5
Lj4P387T11 Lonicera japonica HOM05D005801 ORTHO05D008555 1.5e-12 77.0 56 62.5
Potri.018G087800 Populus trichocarpa HOM05D005801 ORTHO05D008555 1.9e-12 76.6 56 60.7
DCAR_028663 Daucus carota HOM05D005801 ORTHO05D008555 2.5e-12 76.3 56 60.7
Migut.K00541 Erythranthe guttata HOM05D005801 ORTHO05D008555 3.3e-12 75.9 95 43.2
PSO063G7511 Papaver somniferum HOM05D005801 ORTHO05D008555 4.3e-12 75.5 56 60.7
PSO832G4312 Papaver somniferum HOM05D005801 ORTHO05D008555 4.3e-12 75.5 56 60.7
Lsat_1_v5_gn_5_144900 Lactuca sativa HOM05D005801 ORTHO05D008555 5.6e-12 75.1 56 57.1
ATR0681G166 Amborella trichopoda HOM05D005801 ORTHO05D008555 9.5e-12 74.3 55 58.2
Sabra18G0076100 Salix brachista HOM05D005801 ORTHO05D008555 9.5e-12 74.3 55 60.0
CsaV3_1G039790 Cucumis sativus L. HOM05D005801 ORTHO05D008555 1.2e-11 73.9 51 60.8
SGA_v2.0_scaffold129G34141 Striga asiatica HOM05D005801 ORTHO05D008555 1.6e-11 73.6 73 45.2
MELO3C015412.2 Cucumis melo HOM05D005801 ORTHO05D008555 2.8e-11 72.8 51 58.8
FAN26G1315 Fragaria x ananassa HOM05D005801 ORTHO05D008555 2.8e-11 72.8 56 64.3
Glyma.08G033500 Glycine max HOM05D005801 ORTHO05D008555 3.6e-11 72.4 56 60.7
HanXRQChr12g0378121 Helianthus annuus HOM05D005801 ORTHO05D008555 3.6e-11 72.4 56 53.6
EL10Ac8g18377 Beta vulgaris HOM05D005801 ORTHO05D008555 4.7e-11 72.0 56 58.9
Sed0027809 Sechium edule HOM05D005801 ORTHO05D008555 4.7e-11 72.0 51 60.8
HPP92_009088 Vanilla planifolia HOM05D005801 ORTHO05D008555 4.7e-11 72.0 61 55.7
ECA234G2262 Erigeron canadensis HOM05D005801 ORTHO05D008555 1.8e-10 70.1 57 57.9
Ciclev10007826m.g Citrus clementina HOM05D005801 ORTHO05D008555 2.3e-10 69.7 56 58.9
unitig_46.g18397 Utricularia gibba HOM05D005801 ORTHO05D008555 3.1e-10 69.3 56 51.8
BcaB07g33268 Brassica carinata HOM05D005801 ORTHO05D016715 5.2e-10 68.6 69 59.4
SHI02689 Sapria himalayana HOM05D005801 ORTHO05D008555 5.2e-10 68.6 89 39.3
BcaB07g33439 Brassica carinata HOM05D005801 ORTHO05D016715 8.9e-10 67.8 46 76.1
Zm00001eb371210 Zea mays HOM05D005801 ORTHO05D008555 9.8e-09 64.3 56 53.6
CAN.G775.15 Capsicum annuum HOM05D005801 ORTHO05D008555 1.3e-08 63.9 49 59.2
BraSC37t46140Z Brassica rapa HOM05D013368 ORTHO05D024584 2.9e-08 62.8 38 78.9
C09p38590 Brassica napus HOM05D013368 ORTHO05D024584 4.9e-08 62.0 38 78.9
Lalb_Chr09g0331551 Lupinus albus HOM05D005801 ORTHO05D008555 4.9e-08 62.0 45 60.0
CAN.G1277.2 Capsicum annuum HOM05D005801 ORTHO05D008555 8.3e-08 61.2 51 52.9
BcaC01g01198 Brassica carinata HOM05D041247 ORTHO05D016715 1.6e-06 57.0 124 37.1
BcaB01g00402 Brassica carinata HOM05D041247 ORTHO05D016715 2.1e-06 56.6 118 38.1


User provided reference genes

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