Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p44740 Brassica napus HOM05D000070 ORTHO05D032031 2.1e-24 114.8 53 100.0
BolC3t16737H Brassica oleracea HOM05D000070 ORTHO05D032031 2.1e-24 114.8 53 100.0
BcaC01g04137 Brassica carinata HOM05D000070 ORTHO05D032031 2.4e-20 101.3 48 97.9
BcaC01g04529 Brassica carinata HOM05D000070 ORTHO05D002524 1.1e-12 75.9 53 75.5
Thhalv10010134m.g Eutrema salsugineum HOM05D000070 ORTHO05D002524 4.0e-12 73.9 50 74.0
Sp3g00440 Schrenkiella parvula HOM05D000070 ORTHO05D002524 4.0e-12 73.9 50 78.0
BcaB08g34638 Brassica carinata HOM05D000070 ORTHO05D002524 1.2e-11 72.4 50 74.0
C03p39540 Brassica napus HOM05D000070 ORTHO05D002524 2.6e-11 71.2 53 71.7
BolC3t16221H Brassica oleracea HOM05D000070 ORTHO05D002524 2.6e-11 71.2 53 71.7
A03p32450 Brassica napus HOM05D000070 ORTHO05D002524 9.9e-11 69.3 55 70.9
BraA03t12415Z Brassica rapa HOM05D000070 ORTHO05D002524 9.9e-11 69.3 55 70.9
CARHR075310 Cardamine hirsuta HOM05D000070 ORTHO05D002524 9.9e-11 69.3 53 69.8
AT3G01610 Arabidopsis thaliana HOM05D000070 ORTHO05D002524 2.2e-10 68.2 53 69.8
Carub.0003s0045 Capsella rubella HOM05D000070 ORTHO05D002524 2.9e-10 67.8 53 69.8
CARHR017030 Cardamine hirsuta HOM05D000070 ORTHO05D002524 2.9e-10 67.8 50 72.0
BraA04t17348Z Brassica rapa HOM05D000070 ORTHO05D002524 4.9e-10 67.0 50 70.0
AL3G10540 Arabidopsis lyrata HOM05D000070 ORTHO05D002524 8.4e-10 66.2 53 67.9
Carub.0001s1631 Capsella rubella HOM05D000070 ORTHO05D002524 1.4e-09 65.5 50 70.0
AL1G28720 Arabidopsis lyrata HOM05D000070 ORTHO05D002524 1.9e-09 65.1 50 70.0
Aa31LG5G22270 Aethionema arabicum HOM05D000070 ORTHO05D002524 4.2e-09 63.9 54 64.8
BcaC01g03034 Brassica carinata HOM05D000070 ORTHO05D002524 4.2e-09 63.9 50 68.0
C03p56880 Brassica napus HOM05D000070 ORTHO05D002524 4.2e-09 63.9 50 68.0
BolC3t17969H Brassica oleracea HOM05D000070 ORTHO05D002524 4.2e-09 63.9 50 68.0
Aa31LG11G9220 Aethionema arabicum HOM05D000070 ORTHO05D002524 7.1e-09 63.2 54 64.8
Cc02_g33740 Coffea canephora HOM05D000070 ORTHO05D002524 9.3e-09 62.8 52 59.6
CANSAT21G1470 Cannabis sativa HOM05D000070 ORTHO05D002524 2.7e-08 61.2 53 56.6
PGR102G1451 Punica granatum HOM05D000070 ORTHO05D002524 2.7e-08 61.2 45 68.9
BcaB06g27820 Brassica carinata HOM05D000070 ORTHO05D002524 3.5e-08 60.8 53 60.4
Sc08g0000180 Simmondsia chinensis HOM05D000070 ORTHO05D002524 4.6e-08 60.5 52 59.6
Peaxi162Scf00751g00623 Petunia axillaris HOM05D000070 ORTHO05D002524 7.9e-08 59.7 55 58.2
RcHm_v2.0_Chr6g0311431 Rosa chinensis HOM05D000070 ORTHO05D002524 7.9e-08 59.7 49 61.2
Gohir.A13G129300 Gossypium hirsutum HOM05D000070 ORTHO05D002524 1.0e-07 59.3 54 59.3
Gohir.D13G132500 Gossypium hirsutum HOM05D000070 ORTHO05D002524 1.0e-07 59.3 54 59.3
Gorai.013G148700 Gossypium raimondii HOM05D000070 ORTHO05D002524 1.0e-07 59.3 54 59.3
Atru.chr1.3802 Acer truncatum HOM05D000070 ORTHO05D002524 1.3e-07 58.9 52 57.7
Cpa.g.sc96.52 Carica papaya HOM05D000070 ORTHO05D002524 1.3e-07 58.9 51 62.7
ECA240G1122 Erigeron canadensis HOM05D000070 ORTHO05D002524 1.8e-07 58.5 52 57.7
PGR031G0461 Punica granatum HOM05D000070 ORTHO05D002524 1.8e-07 58.5 49 61.2
CAN.G1204.6 Capsicum annuum HOM05D000070 ORTHO05D002524 2.3e-07 58.2 54 57.4
Ciclev10000344m.g Citrus clementina HOM05D000070 ORTHO05D002524 2.3e-07 58.2 50 62.0
Duzib268G1032 Durio zibethinus HOM05D000070 ORTHO05D002524 2.3e-07 58.2 54 59.3
SGA_v2.0_scaffold45G17272 Striga asiatica HOM05D000070 ORTHO05D002524 2.3e-07 58.2 43 69.8
Thecc.04G181900 Theobroma cacao HOM05D000070 ORTHO05D002524 2.3e-07 58.2 54 59.3
EL10Ac1g00438 Beta vulgaris HOM05D000070 ORTHO05D002524 3.0e-07 57.8 48 60.4
BraA03t11019Z Brassica rapa HOM05D000070 ORTHO05D002524 3.0e-07 57.8 53 58.5
Cfa019778 Carpinus fangiana HOM05D000070 ORTHO05D002524 3.0e-07 57.8 53 54.7
PSO081G0161 Papaver somniferum HOM05D000070 ORTHO05D002524 3.0e-07 57.8 39 74.4
PGSC0003DMG400006034 Solanum tuberosum HOM05D000070 ORTHO05D002524 3.0e-07 57.8 54 57.4
SGA_v2.0_scaffold145G36058 Striga asiatica HOM05D000070 ORTHO05D002524 3.0e-07 57.8 51 62.7
Thecc.07G003400 Theobroma cacao HOM05D000070 ORTHO05D002524 3.0e-07 57.8 51 62.7
GSVIVG01010343001 Vitis vinifera HOM05D000070 ORTHO05D002524 3.0e-07 57.8 49 61.2
BcaC01g06115 Brassica carinata HOM05D000070 ORTHO05D002524 3.9e-07 57.4 53 54.7
Cpa.g.sc0.174 Carica papaya HOM05D000070 ORTHO05D002524 3.9e-07 57.4 51 62.7
Dinv15381 Davidia involucrata HOM05D000070 ORTHO05D002524 3.9e-07 57.4 52 57.7
FvH4_2g31390 Fragaria vesca HOM05D000070 ORTHO05D002524 3.9e-07 57.4 49 59.2
FAN15G2302 Fragaria x ananassa HOM05D000070 ORTHO05D002524 3.9e-07 57.4 49 59.2
FAN20G2442 Fragaria x ananassa HOM05D000070 ORTHO05D002524 3.9e-07 57.4 49 59.2
FAN27G3411 Fragaria x ananassa HOM05D000070 ORTHO05D002524 3.9e-07 57.4 49 59.2
Nn7g37080 Nelumbo nucifera HOM05D000070 ORTHO05D002524 3.9e-07 57.4 48 60.4
TAR626G0243 Trochodendron aralioides HOM05D000070 ORTHO05D002524 3.9e-07 57.4 48 60.4
AagrBONN_evm.TU.Sc2ySwM_228.3571 Anthoceros agrestis HOM05D000070 ORTHO05D002524 5.1e-07 57.0 40 65.0
Aqoxy1G01986 Aquilegia oxysepala HOM05D000070 ORTHO05D002524 5.1e-07 57.0 52 55.8
A03p17460 Brassica napus HOM05D000070 ORTHO05D002524 5.1e-07 57.0 53 58.5
CAN.G1209.7 Capsicum annuum HOM05D000070 ORTHO05D002524 5.1e-07 57.0 48 58.3
CAN.G410.45 Capsicum annuum HOM05D000070 ORTHO05D002524 5.1e-07 57.0 48 62.5
FAN24G1231 Fragaria x ananassa HOM05D000070 ORTHO05D002524 5.1e-07 57.0 49 59.2
PSO566G0154 Papaver somniferum HOM05D000070 ORTHO05D002524 5.1e-07 57.0 43 65.1
Solyc01g068330.4 Solanum lycopersicum HOM05D000070 ORTHO05D002524 5.1e-07 57.0 48 62.5
Sopen01g030300 Solanum pennellii HOM05D000070 ORTHO05D002524 5.1e-07 57.0 48 62.5
MSTRG.376 Avicennia marina HOM05D000070 ORTHO05D002524 6.7e-07 56.6 50 58.0
MELO3C012901.2 Cucumis melo HOM05D000070 ORTHO05D002524 6.7e-07 56.6 52 55.8
Nitab4.5_0006307g0030 Nicotiana tabacum HOM05D000070 ORTHO05D002524 6.7e-07 56.6 48 62.5
PSO541G1387 Papaver somniferum HOM05D000070 ORTHO05D002524 6.7e-07 56.6 39 71.8
Prupe.3G135900 Prunus persica HOM05D000070 ORTHO05D002524 6.7e-07 56.6 52 55.8
EL10Ac6g14175 Beta vulgaris HOM05D000070 ORTHO05D002524 8.7e-07 56.2 48 60.4
ClCG04G002380 Citrullus lanatus HOM05D000070 ORTHO05D002524 8.7e-07 56.2 44 63.6
MBI06_g25717_MAGBIO Magnolia biondii HOM05D000070 ORTHO05D002524 8.7e-07 56.2 48 58.3
CAN.G1657.1 Capsicum annuum HOM05D000070 ORTHO05D002524 1.1e-06 55.8 46 58.7
MELO3C020977.2 Cucumis melo HOM05D000070 ORTHO05D002524 1.1e-06 55.8 48 62.5
PSO229G0063 Papaver somniferum HOM05D000070 ORTHO05D002524 1.1e-06 55.8 39 69.2
PSO675G6540 Papaver somniferum HOM05D000070 ORTHO05D002524 1.1e-06 55.8 39 69.2
MSTRG.8146 Avicennia marina HOM05D000070 ORTHO05D002524 1.5e-06 55.5 44 65.9
CSS0033851 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D002524 1.5e-06 55.5 49 59.2
Migut.F01759 Erythranthe guttata HOM05D000070 ORTHO05D002524 1.5e-06 55.5 50 58.0
Eucgr.H03858 Eucalyptus grandis HOM05D000070 ORTHO05D002524 1.5e-06 55.5 52 55.8
HanXRQChr05g0137571 Helianthus annuus HOM05D000070 ORTHO05D002524 1.5e-06 55.5 39 69.2
Lsat_1_v5_gn_4_41860 Lactuca sativa HOM05D000070 ORTHO05D002524 1.5e-06 55.5 52 53.8
Oeu041108.1 Olea europaea HOM05D000070 ORTHO05D002524 1.5e-06 55.5 50 56.0
Pp3c18_11480 Physcomitrium patens HOM05D000070 ORTHO05D002524 1.5e-06 55.5 39 66.7
PGSC0003DMG400017956 Solanum tuberosum HOM05D000070 ORTHO05D002524 1.5e-06 55.5 48 60.4
TAR383G0972 Trochodendron aralioides HOM05D000070 ORTHO05D002524 1.5e-06 55.5 55 54.5
Actinidia05741 Actinidia chinensis HOM05D000070 ORTHO05D002524 1.9e-06 55.1 39 69.2
arahy.Tifrunner.gnm1.ann1.RWW1JH Arachis hypogaea HOM05D000070 ORTHO05D002524 1.9e-06 55.1 46 63.0
CSS0003001 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D002524 1.9e-06 55.1 52 55.8
CAN.G1209.12 Capsicum annuum HOM05D000070 ORTHO05D002524 1.9e-06 55.1 46 58.7
COL.COLO4_11662 Corchorus olitorius HOM05D000070 ORTHO05D009193 1.9e-06 55.1 54 55.6
COL.COLO4_19635 Corchorus olitorius HOM05D000070 ORTHO05D002524 1.9e-06 55.1 54 55.6
CsaV3_4G030490 Cucumis sativus L. HOM05D000070 ORTHO05D002524 1.9e-06 55.1 39 69.2
Hma1.2p1_0071F.1_g037950 Hydrangea macrophylla HOM05D000070 ORTHO05D002524 1.9e-06 55.1 49 59.2
MD17G1241700 Malus domestica HOM05D000070 ORTHO05D002524 1.9e-06 55.1 52 53.8
Nitab4.5_0000316g0150 Nicotiana tabacum HOM05D000070 ORTHO05D002524 1.9e-06 55.1 54 55.6
PSO675G6398 Papaver somniferum HOM05D000070 ORTHO05D002524 1.9e-06 55.1 39 69.2
Peaxi162Scf00309g00013 Petunia axillaris HOM05D000070 ORTHO05D002524 1.9e-06 55.1 39 66.7
Rhsim07G0177400 Rhododendron simsii HOM05D000070 ORTHO05D002524 1.9e-06 55.1 39 69.2
Sed0015610 Sechium edule HOM05D000070 ORTHO05D002524 1.9e-06 55.1 39 69.2
Sed0026597 Sechium edule HOM05D000070 ORTHO05D002524 1.9e-06 55.1 39 69.2
vmacro05054 Vaccinium macrocarpon HOM05D000070 ORTHO05D002524 1.9e-06 55.1 39 69.2
Lj3g0025379 Lotus japonicus HOM05D000070 ORTHO05D002524 2.5e-06 54.7 45 60.0
PSO081G0089 Papaver somniferum HOM05D000070 ORTHO05D002524 2.5e-06 54.7 39 69.2
SalBow3G3279 Salvia bowleyana HOM05D000070 ORTHO05D002524 2.5e-06 54.7 36 75.0
BcaC01g05964 Brassica carinata HOM05D000070 ORTHO05D002524 3.3e-06 54.3 50 60.0
C03p20640 Brassica napus HOM05D000070 ORTHO05D002524 3.3e-06 54.3 50 60.0
BolC3t14460H Brassica oleracea HOM05D000070 ORTHO05D002524 3.3e-06 54.3 50 60.0
CANSAT56G1545 Cannabis sativa HOM05D000070 ORTHO05D002524 3.3e-06 54.3 47 59.6
AUR62037514 Chenopodium quinoa HOM05D000070 ORTHO05D000722 3.3e-06 54.3 39 69.2
AUR62040084 Chenopodium quinoa HOM05D000070 ORTHO05D002524 3.3e-06 54.3 39 69.2
Duzib268G0862 Durio zibethinus HOM05D000070 ORTHO05D002524 3.3e-06 54.3 51 60.8
HanXRQChr11g0321411 Helianthus annuus HOM05D000070 ORTHO05D002524 3.3e-06 54.3 43 65.1
Hund06844 Selenicereus undatus HOM05D000070 ORTHO05D002524 3.3e-06 54.3 52 55.8
CAN.G1495.15 Capsicum annuum HOM05D000070 ORTHO05D002524 4.3e-06 53.9 53 54.7
CAN.G1646.1 Capsicum annuum HOM05D000070 ORTHO05D002524 4.3e-06 53.9 48 58.3
CAN.G2076.2 Capsicum annuum HOM05D000070 ORTHO05D002524 4.3e-06 53.9 48 58.3
Lalb_Chr20g0123471 Lupinus albus HOM05D000070 ORTHO05D002524 4.3e-06 53.9 50 52.0
Manes.12G079001 Manihot esculenta HOM05D000070 ORTHO05D002524 4.3e-06 53.9 48 58.3
Oeu048423.1 Olea europaea HOM05D000070 ORTHO05D002524 4.3e-06 53.9 48 58.3
QL03p008255 Quercus lobata HOM05D000070 ORTHO05D002524 4.3e-06 53.9 49 57.1
QL05p070020 Quercus lobata HOM05D000070 ORTHO05D002524 4.3e-06 53.9 49 57.1
CiPaw.06G146900 Carya illinoinensis HOM05D000070 ORTHO05D002524 5.6e-06 53.5 49 57.1
Prupe.4G275000 Prunus persica HOM05D000070 ORTHO05D002524 5.6e-06 53.5 52 53.8
QL12p000759 Quercus lobata HOM05D000070 ORTHO05D002524 5.6e-06 53.5 36 75.0
SEGI_11649 Sequoiadendron giganteum HOM05D000070 ORTHO05D000722 5.6e-06 53.5 49 59.2
CAN.G1330.42 Capsicum annuum HOM05D000070 ORTHO05D002524 7.4e-06 53.1 57 49.1
CAN.G1677.7 Capsicum annuum HOM05D000070 ORTHO05D002524 7.4e-06 53.1 48 58.3
CBR_g4379 Chara braunii HOM05D000070 ORTHO05D002524 7.4e-06 53.1 39 61.5
Ca_00073_v3 Cicer arietinum L. HOM05D000145 ORTHO05D002524 7.4e-06 53.1 50 58.0
MD09G1249100 Malus domestica HOM05D000070 ORTHO05D002524 7.4e-06 53.1 44 61.4
CSS0015124 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D002524 9.6e-06 52.8 52 53.8
CANSAT78G0982 Cannabis sativa HOM05D000070 ORTHO05D002524 9.6e-06 52.8 50 54.0
HanXRQChr11g0321461 Helianthus annuus HOM05D000070 ORTHO05D002524 9.6e-06 52.8 43 65.1
HanXRQChr11g0321501 Helianthus annuus HOM05D000070 ORTHO05D002524 9.6e-06 52.8 39 69.2
Hma1.2p1_1026F.1_g249430 Hydrangea macrophylla HOM05D000070 ORTHO05D002524 9.6e-06 52.8 50 58.0
Medtr2g007010 Medicago truncatula HOM05D000070 ORTHO05D002524 9.6e-06 52.8 50 58.0
Psat1g220280 Pisum sativum HOM05D000070 ORTHO05D002524 9.6e-06 52.8 50 58.0
TPR.G2071 Trifolium pratense HOM05D000070 ORTHO05D002524 9.6e-06 52.8 50 58.0


User provided reference genes

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