Gene: AT3G01610

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G01610
  • Transcript Identifier AT3G01610.2
  • Gene Type Coding gene
  • Location Chr3 : 231787-235279 : positive

Gene Family Information

  • ID HOM05D000070
  • #Genes/#Species 3945/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G01610.2
  • symbol CDC48C
  • Alias emb1354,embryo defective 1354
  • uniprot Q9SS94

Descriptions

  • Description cell division cycle 48C
  • Computational description cell division cycle 48C (CDC48C); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: embryo development ending in seed dormancy; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 65227 Blast hits to 39412 proteins in 3299 species: Archae - 1912; Bacteria - 27659; Metazoa - 8516; Fungi - 6329; Plants - 5583; Viruses - 58; Other Eukaryotes - 15170 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0015031
IEA
GOA Databaseprotein transport
GO:0051301
IEA
GOA Databasecell division
GO:0007049
IEA
GOA Databasecell cycle
GO:0051973
IBA
Gene Ontologypositive regulation of telomerase activity1
GO:0042254
IBA
Gene Ontologyribosome biogenesis1
GO:0009793
NAS
Gene Ontologyembryo development ending in seed dormancy

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016887
IBA
Gene OntologyATP hydrolysis activity1
GO:0016887
IEA
InterProATP hydrolysis activity
GO:0005524
IEA
Gene OntologyATP binding
GO:0005524
IEA
InterProATP binding
GO:0000166
IEA
GOA Databasenucleotide binding
GO:1990275
IBA
Gene Ontologypreribosome binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009524
IEA
GOA Databasephragmoplast
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005856
IEA
GOA Databasecytoskeleton
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM, IBA
Gene Ontologynucleus1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003959 ATPase, AAA-type, core
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR003593 AAA+ ATPase domain
IPR041569 AAA ATPase, AAA+ lid domain
Mapman id Description
19.2.4.1.1 Protein homeostasis.ubiquitin-proteasome system.membrane-associated protein degradation.CDC48-NPL4-UFD1 chaperone complex.platform ATPase component CDC48