Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p34490 Brassica napus HOM05D003906 ORTHO05D004776 2.0e-200 702.2 346 100.0
BraA03t12055Z Brassica rapa HOM05D003906 ORTHO05D004776 1.7e-196 689.1 341 98.8
A03p28530 Brassica napus HOM05D003906 ORTHO05D004776 5.2e-193 677.6 341 97.1
BolC3t15761H Brassica oleracea HOM05D003906 ORTHO05D004776 2.0e-192 675.6 336 98.2
BcaC01g04722 Brassica carinata HOM05D003906 ORTHO05D004776 1.2e-184 649.8 323 98.1
BcaB01g02792 Brassica carinata HOM05D003906 ORTHO05D004776 9.5e-179 630.2 342 90.6
Sp6g08200 Schrenkiella parvula HOM05D003906 ORTHO05D004776 1.2e-168 596.7 319 89.3
AT4G09340 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 5.8e-160 567.8 342 82.5
AL6G42970 Arabidopsis lyrata HOM05D003906 ORTHO05D004776 1.1e-155 553.5 323 83.0
Carub.0006s2784 Capsella rubella HOM05D003906 ORTHO05D004776 7.4e-155 550.8 341 78.6
THA.LOC104816477 Tarenaya hassleriana HOM05D003906 ORTHO05D004776 1.6e-141 506.5 342 72.2
Aa31LG6G8750 Aethionema arabicum HOM05D003906 ORTHO05D004776 1.1e-139 500.4 327 72.2
A09p31780 Brassica napus HOM05D003906 ORTHO05D004776 8.2e-138 494.2 337 70.9
BraA09t38715Z Brassica rapa HOM05D003906 ORTHO05D004776 1.8e-137 493.0 337 70.6
BcaC08g43739 Brassica carinata HOM05D003906 ORTHO05D004776 5.3e-137 491.5 337 70.6
BolC6t36252H Brassica oleracea HOM05D003906 ORTHO05D004776 5.3e-137 491.5 337 70.6
BcaB07g33091 Brassica carinata HOM05D003906 ORTHO05D004776 1.2e-136 490.3 337 70.3
C06p11170 Brassica napus HOM05D003906 ORTHO05D004776 3.4e-136 488.8 337 70.0
Gorai.006G130100 Gossypium raimondii HOM05D003906 ORTHO05D004776 1.1e-134 483.8 336 69.3
Sp1g30230 Schrenkiella parvula HOM05D003906 ORTHO05D004776 1.4e-134 483.4 337 69.7
Gohir.A09G115500 Gossypium hirsutum HOM05D003906 ORTHO05D004776 4.2e-134 481.9 337 68.5
Thhalv10001818m.g Eutrema salsugineum HOM05D003906 ORTHO05D004776 7.2e-134 481.1 339 70.2
Gohir.D09G112300 Gossypium hirsutum HOM05D003906 ORTHO05D004776 7.2e-134 481.1 336 68.8
Atru.chr2.1825 Acer truncatum HOM05D003906 ORTHO05D004776 1.6e-133 479.9 337 69.1
FvH4_5g32270 Fragaria vesca HOM05D003906 ORTHO05D004776 4.6e-133 478.4 336 67.3
Ciclev10001078m.g Citrus clementina HOM05D003906 ORTHO05D004776 1.0e-132 477.2 319 70.8
Gohir.D05G252500 Gossypium hirsutum HOM05D003906 ORTHO05D004776 1.0e-132 477.2 339 67.6
Gorai.009G264700 Gossypium raimondii HOM05D003906 ORTHO05D004776 1.4e-132 476.9 339 67.6
AT1G35470 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 3.9e-132 475.3 337 67.7
Gohir.A05G251300 Gossypium hirsutum HOM05D003906 ORTHO05D004776 1.1e-131 473.8 339 67.0
Duzib177G0129 Durio zibethinus HOM05D003906 ORTHO05D004776 2.5e-131 472.6 331 68.3
Carub.0001s3308 Capsella rubella HOM05D003906 ORTHO05D004776 3.3e-131 472.2 337 67.7
CsaV3_5G040450 Cucumis sativus L. HOM05D003906 ORTHO05D004776 1.3e-130 470.3 336 67.6
Eucgr.F02579 Eucalyptus grandis HOM05D003906 ORTHO05D004776 1.7e-130 469.9 338 66.3
MELO3C022219.2 Cucumis melo HOM05D003906 ORTHO05D004776 2.8e-130 469.2 336 67.6
BcaC05g27736 Brassica carinata HOM05D003906 ORTHO05D004776 4.8e-130 468.4 338 68.9
C05p37240 Brassica napus HOM05D003906 ORTHO05D004776 4.8e-130 468.4 338 68.9
BcaB03g13663 Brassica carinata HOM05D003906 ORTHO05D004776 1.1e-129 467.2 321 69.8
Manes.02G196200 Manihot esculenta HOM05D003906 ORTHO05D004776 1.1e-129 467.2 323 67.8
Prupe.1G552200 Prunus persica HOM05D003906 ORTHO05D004776 1.1e-129 467.2 336 66.7
QL02p025746 Quercus lobata HOM05D003906 ORTHO05D004776 3.1e-129 465.7 341 65.1
A05p23780 Brassica napus HOM05D003906 ORTHO05D004776 5.3e-129 464.9 336 68.5
BraA05t21248Z Brassica rapa HOM05D003906 ORTHO05D004776 5.3e-129 464.9 336 68.5
BolC5t32471H Brassica oleracea HOM05D003906 ORTHO05D004776 9.1e-129 464.2 336 68.8
CARHR260350 Cardamine hirsuta HOM05D003906 ORTHO05D004776 2.6e-128 462.6 282 79.4
MD15G1410300 Malus domestica HOM05D003906 ORTHO05D004776 5.9e-128 461.5 369 61.2
PGR042G0234 Punica granatum HOM05D003906 ORTHO05D004776 1.7e-127 459.9 323 67.5
CARHR034240 Cardamine hirsuta HOM05D003906 ORTHO05D004776 2.2e-127 459.5 322 68.0
Medtr4g032800 Medicago truncatula HOM05D003906 ORTHO05D004776 2.2e-127 459.5 342 63.7
AL1G50340 Arabidopsis lyrata HOM05D003906 ORTHO05D004776 6.5e-127 458.0 365 61.6
FAN18G2269 Fragaria x ananassa HOM05D003906 ORTHO05D004776 1.1e-126 457.2 367 61.3
Phvul.011G000900 Phaseolus vulgaris HOM05D003906 ORTHO05D004776 1.4e-126 456.8 315 66.7
Sed0011736 Sechium edule HOM05D003906 ORTHO05D004776 1.9e-126 456.4 319 67.4
Glyma.08G238500 Glycine max HOM05D003906 ORTHO05D004776 2.5e-126 456.1 316 66.8
TWI59G1118 Tripterygium wilfordii HOM05D003906 ORTHO05D004776 2.5e-126 456.1 321 67.3
VMungo1127G1719 Vigna mungo HOM05D003906 ORTHO05D004776 4.2e-126 455.3 316 66.1
Cfa012932 Carpinus fangiana HOM05D003906 ORTHO05D000991 5.5e-126 454.9 312 68.3
arahy.Tifrunner.gnm1.ann1.NDRV14 Arachis hypogaea HOM05D003906 ORTHO05D004776 4.7e-125 451.8 338 63.3
CiPaw.08G001800 Carya illinoinensis HOM05D003906 ORTHO05D004776 4.7e-125 451.8 337 64.1
Glyma.12G000900 Glycine max HOM05D003906 ORTHO05D004776 6.1e-125 451.4 328 65.2
MD08G1220100 Malus domestica HOM05D003906 ORTHO05D004776 1.8e-124 449.9 336 64.6
Manes.18G104100 Manihot esculenta HOM05D003906 ORTHO05D004776 5.1e-124 448.4 323 65.3
FAN04G2445 Fragaria x ananassa HOM05D003906 ORTHO05D004776 1.1e-123 447.2 336 63.4
Lj3g0000257 Lotus japonicus HOM05D003906 ORTHO05D004776 4.4e-123 445.3 340 62.6
TPR.G34173 Trifolium pratense HOM05D003906 ORTHO05D004776 9.7e-123 444.1 316 65.5
Ca_19699_v3 Cicer arietinum L. HOM05D003906 ORTHO05D004776 4.8e-122 441.8 317 64.4
Hund16785 Selenicereus undatus HOM05D003906 ORTHO05D004776 4.8e-122 441.8 327 63.9
CSS0022245 Camellia sinensis var. sinensis HOM05D003906 ORTHO05D004776 1.4e-121 440.3 339 63.1
CSS0049725 Camellia sinensis var. sinensis HOM05D003906 ORTHO05D004776 1.4e-121 440.3 339 63.1
Dinv41741 Davidia involucrata HOM05D003906 ORTHO05D004776 5.3e-121 438.3 336 62.5
Dinv04083 Davidia involucrata HOM05D003906 ORTHO05D004776 5.9e-120 434.9 336 61.6
TAR628G0992 Trochodendron aralioides HOM05D003906 ORTHO05D004776 1.3e-119 433.7 335 61.2
Actinidia23018 Actinidia chinensis HOM05D003906 ORTHO05D004776 8.5e-119 431.0 338 61.2
Thecc.08G187700 Theobroma cacao HOM05D003906 ORTHO05D004776 1.9e-118 429.9 322 66.1
Hma1.2p1_0342F.1_g130710 Hydrangea macrophylla HOM05D003906 ORTHO05D004776 2.5e-118 429.5 341 61.0
Psat7g226120 Pisum sativum HOM05D003906 ORTHO05D004776 5.5e-118 428.3 313 63.6
arahy.Tifrunner.gnm1.ann1.AC170Q Arachis hypogaea HOM05D003906 ORTHO05D004776 1.6e-117 426.8 390 54.9
Duzib116G0916 Durio zibethinus HOM05D003906 ORTHO05D004776 2.7e-117 426.0 320 64.1
Potri.013G108400 Populus trichocarpa HOM05D003906 ORTHO05D004776 2.7e-117 426.0 338 63.3
Peaxi162Scf00076g00225 Petunia axillaris HOM05D003906 ORTHO05D004776 3.6e-117 425.6 338 60.4
Nitab4.5_0009321g0030 Nicotiana tabacum HOM05D003906 ORTHO05D004776 1.8e-116 423.3 320 62.8
Cc10_g10260 Coffea canephora HOM05D003906 ORTHO05D004776 1.1e-115 420.6 317 63.4
Solyc03g033380.3 Solanum lycopersicum HOM05D003906 ORTHO05D004776 1.5e-115 420.2 318 62.9
Aqoxy5G02955 Aquilegia oxysepala HOM05D003906 ORTHO05D004776 3.3e-115 419.1 335 58.8
CAN.G354.51 Capsicum annuum HOM05D003906 ORTHO05D004776 3.3e-115 419.1 318 61.6
SalBow7G1596 Salvia bowleyana HOM05D003906 ORTHO05D004776 3.3e-115 419.1 318 62.9
Sopen03g006150 Solanum pennellii HOM05D003906 ORTHO05D004776 5.7e-115 418.3 320 62.5
Haze_21286 Corylus avellana HOM05D003906 ORTHO05D004776 9.7e-115 417.5 356 59.6
Lalb_Chr01g0000071 Lupinus albus HOM05D003906 ORTHO05D004776 2.8e-114 416.0 331 60.1
PSO170G2127 Papaver somniferum HOM05D003906 ORTHO05D004776 6.3e-114 414.8 329 58.7
PSO017G0948 Papaver somniferum HOM05D003906 ORTHO05D004776 2.0e-112 409.8 324 58.3
Ah.05g178390 Amaranthus hybridus HOM05D003906 ORTHO05D004776 5.9e-112 408.3 330 60.9
Rhsim06G0114100 Rhododendron simsii HOM05D003906 ORTHO05D004776 2.9e-111 406.0 399 52.6
SGA_v2.0_scaffold24G10576 Striga asiatica HOM05D003906 ORTHO05D004776 3.8e-111 405.6 378 53.7
unitig_749.g13881 Utricularia gibba HOM05D003906 ORTHO05D004776 1.9e-110 403.3 317 60.6
EL10Ac1g00112 Beta vulgaris HOM05D003906 ORTHO05D004776 1.2e-109 400.6 341 58.7
GSVIVG01001786001 Vitis vinifera HOM05D003906 ORTHO05D004776 1.0e-108 397.5 284 65.8
DCAR_001451 Daucus carota HOM05D003906 ORTHO05D004776 3.0e-108 396.0 328 60.1
MSTRG.1555 Avicennia marina HOM05D003906 ORTHO05D004776 1.5e-107 393.7 345 57.7
Sabra19G0091700 Salix brachista HOM05D003906 ORTHO05D004776 2.0e-107 393.3 382 54.2
Oeu064077.1 Olea europaea HOM05D003906 ORTHO05D004776 7.5e-107 391.3 363 55.1
CDE08G1205 Ceratophyllum demersum HOM05D003906 ORTHO05D004776 9.7e-107 391.0 327 56.6
MBI06_g32171_MAGBIO Magnolia biondii HOM05D003906 ORTHO05D004776 2.2e-106 389.8 326 59.2
ECA247G1339 Erigeron canadensis HOM05D003906 ORTHO05D004776 2.8e-106 389.4 313 60.1
HanXRQChr04g0109631 Helianthus annuus HOM05D003906 ORTHO05D004776 2.8e-106 389.4 326 57.4
Oeu051791.1 Olea europaea HOM05D003906 ORTHO05D004776 1.4e-105 387.1 358 54.5
Lsat_1_v5_gn_1_12460 Lactuca sativa HOM05D003906 ORTHO05D004776 1.8e-105 386.7 326 58.6
Nitab4.5_0000130g0080 Nicotiana tabacum HOM05D003906 ORTHO05D004776 3.1e-105 386.0 313 59.4
Migut.C01295 Erythranthe guttata HOM05D003906 ORTHO05D004776 9.1e-105 384.4 331 56.5
AUR62023516 Chenopodium quinoa HOM05D003906 ORTHO05D004776 1.2e-104 384.0 339 56.9
Os02g0556600 Oryza sativa ssp. japonica HOM05D003906 ORTHO05D004776 6.5e-103 378.3 325 55.1
Zm00001eb243840 Zea mays HOM05D003906 ORTHO05D004776 6.5e-103 378.3 323 54.5
ATR1136G046 Amborella trichopoda HOM05D003906 ORTHO05D004776 1.1e-102 377.5 327 56.3
HPP92_001193 Vanilla planifolia HOM05D003906 ORTHO05D004776 5.5e-102 375.2 316 57.3
FAN08G0013 Fragaria x ananassa HOM05D006455 ORTHO05D004776 2.7e-101 372.9 364 52.5
AUR62004621 Chenopodium quinoa HOM05D003906 ORTHO05D004776 1.0e-100 370.9 339 55.5
Lj4C483G1 Lonicera japonica HOM05D003906 ORTHO05D004776 7.5e-99 364.8 360 52.8
Mapoly0002s0237 Marchantia polymorpha HOM05D003906 ORTHO05D004776 9.8e-99 364.4 321 54.2
Zm00001eb182000 Zea mays HOM05D003906 ORTHO05D004776 9.8e-99 364.4 322 54.0
COL.COLO4_24795 Corchorus olitorius HOM05D003906 ORTHO05D004776 3.6e-93 345.9 374 51.6
SMO236G0134 Selaginella moellendorffii HOM05D003906 ORTHO05D004776 2.8e-90 336.3 326 49.7
CSS0005180 Camellia sinensis var. sinensis HOM05D003906 ORTHO05D004776 1.0e-87 327.8 282 57.1
CDE02G3748 Ceratophyllum demersum HOM05D003906 ORTHO05D004776 1.3e-87 327.4 268 57.1
Pp3c16_23970 Physcomitrium patens HOM05D003906 ORTHO05D004776 4.3e-86 322.4 336 47.0
Potri.019G080800 Populus trichocarpa HOM05D003906 ORTHO05D004776 1.2e-85 320.9 232 66.4
SHI26286 Sapria himalayana HOM05D003906 ORTHO05D004776 1.8e-84 317.0 417 42.0
Sabra13G0093600 Salix brachista HOM05D003906 ORTHO05D004776 3.0e-84 316.2 417 44.4
Pp3c25_15350 Physcomitrium patens HOM05D003906 ORTHO05D004776 5.8e-83 312.0 335 46.3
vmacro12471 Vaccinium macrocarpon HOM05D003906 ORTHO05D004776 1.9e-81 307.0 231 62.3
Sc23g0001390 Simmondsia chinensis HOM05D003906 ORTHO05D004776 1.2e-75 287.7 232 60.8
RcHm_v2.0_Chr7g0228461 Rosa chinensis HOM05D003906 ORTHO05D004776 2.0e-75 287.0 197 67.5
Nn5g27566 Nelumbo nucifera HOM05D003906 ORTHO05D004776 6.2e-69 265.4 196 63.8
FAN13G2487 Fragaria x ananassa HOM05D003906 ORTHO05D004776 8.9e-68 261.5 184 67.4
AT4G09200 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 4.9e-66 255.8 323 47.1
AT4G09310 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 4.9e-66 255.8 323 47.1
Cre09.g387801 Chlamydomonas reinhardtii HOM05D003906 ORTHO05D004776 7.3e-62 241.9 319 40.1
AT4G09250 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 1.2e-59 234.6 293 46.8
SabraUnG0004400 Salix brachista HOM05D003906 ORTHO05D004776 8.7e-55 218.4 183 60.1
ClCG08G000300 Citrullus lanatus HOM05D003906 ORTHO05D004776 7.8e-48 195.3 150 64.0
Migut.C00143 Erythranthe guttata HOM05D003906 ORTHO05D004776 1.0e-47 194.9 303 38.3
RcHm_v2.0_Chr7g0228471 Rosa chinensis HOM05D003906 ORTHO05D004776 6.6e-47 192.2 138 63.8
A03p28510 Brassica napus HOM05D003906 ORTHO05D004776 2.8e-45 186.8 243 44.0
BcaB01g02795 Brassica carinata HOM05D003906 ORTHO05D004776 4.0e-44 183.0 243 42.8
PRCOL_00002342 Prasinoderma coloniale HOM05D003906 ORTHO05D004776 1.2e-43 181.4 312 34.0
BolC3t15755H Brassica oleracea HOM05D003906 ORTHO05D004776 8.4e-42 175.3 218 44.0
Nn3g18941 Nelumbo nucifera HOM05D003906 ORTHO05D004776 6.2e-37 159.1 131 58.0
Cfa023121 Carpinus fangiana HOM05D003906 ORTHO05D004776 6.9e-36 155.6 297 32.3
C03p34460 Brassica napus HOM05D003906 ORTHO05D004776 1.2e-35 154.8 226 42.5
CBR_g30766 Chara braunii HOM05D000019 ORTHO05D000048 4.5e-35 152.9 303 32.3
unitig_32.g11182 Utricularia gibba HOM05D000008 ORTHO05D000005 9.9e-35 151.8 272 36.8
Sed0013629 Sechium edule HOM05D003906 ORTHO05D004776 1.4e-33 147.9 275 34.2
Cfa012929 Carpinus fangiana HOM05D003906 ORTHO05D004776 4.2e-33 146.4 94 74.5
SEGI_19081 Sequoiadendron giganteum HOM05D003906 ORTHO05D004776 9.3e-33 145.2 126 55.6
AagrBONN_evm.TU.Sc2ySwM_228.4865 Anthoceros agrestis HOM05D003906 ORTHO05D011031 3.3e-30 136.7 181 39.2
Cpa.g.c39095 Carica papaya HOM05D003906 ORTHO05D004776 9.6e-30 135.2 101 66.3
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 2.8e-29 133.7 286 29.4
vmacro12470 Vaccinium macrocarpon HOM05D003906 ORTHO05D004776 1.8e-28 131.0 124 55.6
MCO01G564 Micromonas commoda HOM05D003906 ORTHO05D004776 1.0e-26 125.2 266 28.6
AagrBONN_evm.TU.Sc2ySwM_369.175 Anthoceros agrestis HOM05D003906 ORTHO05D004776 1.2e-24 118.2 170 36.5
SEGI_33732 Sequoiadendron giganteum HOM05D003906 ORTHO05D004776 1.2e-24 118.2 93 55.9
AagrBONN_evm.TU.Sc2ySwM_362.2414 Anthoceros agrestis HOM05D007564 ORTHO05D009975 2.1e-24 117.5 176 35.8
SEGI_28086 Sequoiadendron giganteum HOM05D003906 ORTHO05D004776 1.8e-23 114.4 94 57.4
Cre01.g007150 Chlamydomonas reinhardtii HOM05D003906 ORTHO05D004776 1.3e-21 108.2 201 28.4
DCAR_028625 Daucus carota HOM05D003906 ORTHO05D004776 2.5e-17 94.0 73 58.9
BcaC01g04724 Brassica carinata HOM05D003906 ORTHO05D004776 2.7e-16 90.5 200 32.0
SEGI_20889 Sequoiadendron giganteum HOM05D003906 ORTHO05D004776 9.7e-14 82.0 80 43.8
Cpa.g.c30412.1 Carica papaya HOM05D003906 ORTHO05D004776 1.6e-08 64.7 36 83.3
Lj4g0013515 Lotus japonicus HOM05D003178 ORTHO05D003636 3.9e-07 60.1 159 28.9
Cfa023097 Carpinus fangiana HOM05D003906 ORTHO05D004776 6.7e-07 59.3 81 39.5
PSO210G5949 Papaver somniferum HOM05D003178 ORTHO05D003636 1.5e-06 58.2 134 30.6
PSO832G0753 Papaver somniferum HOM05D003178 ORTHO05D003636 1.5e-06 58.2 134 30.6
Gohir.A13G059533 Gossypium hirsutum HOM05D003906 ORTHO05D004776 3.3e-06 57.0 40 65.0
Gohir.D10G179233 Gossypium hirsutum HOM05D003906 ORTHO05D029892 3.3e-06 57.0 40 65.0
Gohir.D13G134850 Gossypium hirsutum HOM05D003906 ORTHO05D029892 3.3e-06 57.0 40 65.0
Gorai.006G003400 Gossypium raimondii HOM05D003906 ORTHO05D029892 3.3e-06 57.0 40 65.0
unitig_22.g6744 Utricularia gibba HOM05D003178 ORTHO05D003636 5.7e-06 56.2 139 28.1
FAN21G3415 Fragaria x ananassa HOM05D003178 ORTHO05D003636 7.4e-06 55.8 134 27.6
Pp3c22_200 Physcomitrium patens HOM05D003906 ORTHO05D003636 9.7e-06 55.5 115 33.9


User provided reference genes

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