Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p33470 Brassica napus HOM05D007098 ORTHO05D008793 1.1e-245 853.6 712 100.0
BcaC01g04822 Brassica carinata HOM05D007098 ORTHO05D008793 8.4e-238 827.4 713 98.2
BolC3t15668H Brassica oleracea HOM05D007098 ORTHO05D008793 1.9e-234 816.2 712 97.2
A03p27750 Brassica napus HOM05D007098 ORTHO05D008793 6.0e-228 794.7 717 95.5
BraA03t11986Z Brassica rapa HOM05D007098 ORTHO05D008793 1.3e-227 793.5 711 96.2
BcaB01g02904 Brassica carinata HOM05D007098 ORTHO05D008793 1.7e-214 750.0 711 91.3
Sp6g12370 Schrenkiella parvula HOM05D007098 ORTHO05D008793 4.8e-177 625.5 718 85.0
Thhalv10012796m.g Eutrema salsugineum HOM05D007098 ORTHO05D008793 1.2e-167 594.3 719 81.9
AT5G50280 Arabidopsis thaliana HOM05D007098 ORTHO05D008793 1.1e-165 587.8 716 80.4
Carub.0008s1032 Capsella rubella HOM05D007098 ORTHO05D008793 5.2e-163 578.9 724 80.0
AL8G24320 Arabidopsis lyrata HOM05D007098 ORTHO05D008793 3.4e-162 576.2 717 79.4
CARHR258300 Cardamine hirsuta HOM05D007098 ORTHO05D008793 4.1e-152 542.7 714 76.3
Aa31LG3G5960 Aethionema arabicum HOM05D007098 ORTHO05D008793 1.1e-144 518.1 728 75.0
THA.LOC104824999 Tarenaya hassleriana HOM05D007098 ORTHO05D008793 3.6e-132 476.5 706 70.8
Manes.06G113500 Manihot esculenta HOM05D007098 ORTHO05D008793 1.0e-110 405.2 619 72.9
CsaV3_1G009150 Cucumis sativus L. HOM05D007098 ORTHO05D008793 1.1e-109 401.7 616 72.6
Haze_07291 Corylus avellana HOM05D007098 ORTHO05D008793 1.6e-100 371.3 621 70.7
MD06G1160200 Malus domestica HOM05D007098 ORTHO05D008793 4.8e-100 369.8 619 70.9
Cpa.g.sc4.42 Carica papaya HOM05D007098 ORTHO05D008793 3.1e-99 367.1 620 71.1
ClCG03G003340 Citrullus lanatus HOM05D007098 ORTHO05D008793 5.3e-99 366.3 616 70.9
FAN13G2898 Fragaria x ananassa HOM05D007098 ORTHO05D008793 1.7e-97 361.3 618 70.7
MELO3C002322.2 Cucumis melo HOM05D007098 ORTHO05D008793 4.9e-97 359.8 616 70.5
Sabra12G0066500 Salix brachista HOM05D007098 ORTHO05D008793 8.4e-97 359.0 710 66.6
CiPaw.11G013600 Carya illinoinensis HOM05D007098 ORTHO05D008793 1.1e-96 358.6 616 70.6
HanXRQChr09g0272771 Helianthus annuus HOM05D007098 ORTHO05D008793 1.1e-96 358.6 633 68.7
Atru.chr9.986 Acer truncatum HOM05D007098 ORTHO05D008793 1.9e-96 357.8 703 67.4
Potri.012G091800 Populus trichocarpa HOM05D007098 ORTHO05D008793 7.1e-96 355.9 706 64.2
FAN18G2243 Fragaria x ananassa HOM05D007098 ORTHO05D008793 1.6e-95 354.8 619 70.0
SGA_v2.0_scaffold45G17096 Striga asiatica HOM05D006560 ORTHO05D008164 2.1e-95 354.4 708 63.1
FvH4_5g07010 Fragaria vesca HOM05D007098 ORTHO05D008793 4.6e-95 353.2 618 70.2
Sed0010608 Sechium edule HOM05D007098 ORTHO05D008793 7.9e-95 352.4 613 69.3
QL10p005624 Quercus lobata HOM05D007098 ORTHO05D008793 3.0e-94 350.5 618 70.1
RcHm_v2.0_Chr7g0191671 Rosa chinensis HOM05D007098 ORTHO05D008793 6.7e-94 349.4 686 68.1
TWI39G0887 Tripterygium wilfordii HOM05D007098 ORTHO05D008793 1.1e-93 348.6 692 67.1
FAN04G0983 Fragaria x ananassa HOM05D007098 ORTHO05D008793 2.5e-93 347.4 617 59.6
EL10Ac7g18049 Beta vulgaris HOM05D007098 ORTHO05D008793 9.7e-93 345.5 714 62.9
Gorai.001G062100 Gossypium raimondii HOM05D007098 ORTHO05D008793 9.7e-93 345.5 624 68.1
Ciclev10019054m.g Citrus clementina HOM05D007098 ORTHO05D008793 1.3e-92 345.1 614 70.5
Hma1.2p1_0014F.1_g009950 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 1.3e-92 345.1 622 69.5
Ah.08g218330 Amaranthus hybridus HOM05D007098 ORTHO05D008793 2.8e-92 344.0 672 66.5
Gohir.D07G058600 Gossypium hirsutum HOM05D007098 ORTHO05D008793 4.1e-91 340.1 624 67.8
Dinv11119 Davidia involucrata HOM05D002040 ORTHO05D002502 6.9e-91 339.3 618 66.3
Gohir.A07G054300 Gossypium hirsutum HOM05D007098 ORTHO05D008793 6.5e-89 332.8 718 62.5
Thecc.03G120500 Theobroma cacao HOM05D007098 ORTHO05D008793 1.1e-88 332.0 716 61.9
Cc04_g10690 Coffea canephora HOM05D007098 ORTHO05D008793 5.5e-88 329.7 619 67.9
Cfa018906 Carpinus fangiana HOM05D007098 ORTHO05D008793 4.6e-87 326.6 542 75.3
MSTRG.9703 Avicennia marina HOM05D007098 ORTHO05D008793 5.1e-86 323.2 706 61.6
SalBow1G0423 Salvia bowleyana HOM05D007098 ORTHO05D008793 1.1e-85 322.0 722 60.4
ECA232G2468 Erigeron canadensis HOM05D001195 ORTHO05D001138 2.0e-85 321.2 574 70.2
Lalb_Chr10g0098821 Lupinus albus HOM05D007098 ORTHO05D008793 2.0e-85 321.2 624 67.3
Prupe.5G160200 Prunus persica HOM05D007098 ORTHO05D008793 1.7e-84 318.2 617 67.3
Lj2g0008135 Lotus japonicus HOM05D007098 ORTHO05D008793 8.2e-84 315.8 617 67.4
MBI11_g46348_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 1.4e-83 315.1 609 68.0
Glyma.12G037500 Glycine max HOM05D007098 ORTHO05D008793 4.1e-83 313.5 619 66.7
Lsat_1_v5_gn_4_78280 Lactuca sativa HOM05D007098 ORTHO05D008793 9.1e-83 312.4 629 65.8
Nn5g28372 Nelumbo nucifera HOM05D007098 ORTHO05D008793 1.2e-82 312.0 619 65.9
Duzib205G2031 Durio zibethinus HOM05D007098 ORTHO05D008793 4.5e-82 310.1 618 67.2
Glyma.11G111200 Glycine max HOM05D007098 ORTHO05D008793 4.5e-82 310.1 711 60.3
PGSC0003DMG400015232 Solanum tuberosum HOM05D007098 ORTHO05D008793 5.9e-82 309.7 711 61.5
Phvul.011G039200 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 2.2e-81 307.8 619 65.8
AUR62001258 Chenopodium quinoa HOM05D007098 ORTHO05D008793 7.2e-80 302.8 620 66.5
AUR62025750 Chenopodium quinoa HOM05D007098 ORTHO05D008793 7.2e-80 302.8 620 65.8
GSVIVG01007576001 Vitis vinifera HOM05D007098 ORTHO05D008793 7.9e-79 299.3 693 63.1
Peaxi162Scf00089g00927 Petunia axillaris HOM05D007098 ORTHO05D008793 6.7e-78 296.2 617 66.1
arahy.Tifrunner.gnm1.ann1.RHK9HC Arachis hypogaea HOM05D007098 ORTHO05D008793 5.7e-77 293.1 699 60.5
Medtr5g045490 Medicago truncatula HOM05D007098 ORTHO05D008793 5.7e-77 293.1 618 66.7
Rhsim08G0182900 Rhododendron simsii HOM05D007098 ORTHO05D008793 1.7e-76 291.6 621 65.2
CANSAT80G2237 Cannabis sativa HOM05D007098 ORTHO05D008793 2.2e-76 291.2 625 65.9
TAR371G0113 Trochodendron aralioides HOM05D007098 ORTHO05D008793 2.2e-76 291.2 618 66.0
arahy.Tifrunner.gnm1.ann1.PW5CDL Arachis hypogaea HOM05D007098 ORTHO05D008793 3.7e-76 290.4 705 60.4
TPR.G24468 Trifolium pratense HOM05D007098 ORTHO05D008793 4.8e-76 290.0 619 65.8
vmacro19257 Vaccinium macrocarpon HOM05D007098 ORTHO05D008793 4.8e-76 290.0 584 66.4
Psat2g130240 Pisum sativum HOM05D007098 ORTHO05D008793 3.1e-75 287.3 616 66.2
PSO782G3618 Papaver somniferum HOM05D007098 ORTHO05D008793 4.1e-75 287.0 625 64.0
PSO063G4104 Papaver somniferum HOM05D007098 ORTHO05D008793 7.0e-75 286.2 617 64.0
CSS0038177 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 1.0e-73 282.3 593 65.6
Migut.D02039 Erythranthe guttata HOM05D007098 ORTHO05D008793 3.8e-73 280.4 624 64.3
Actinidia16202 Actinidia chinensis HOM05D007098 ORTHO05D008793 1.5e-72 278.5 613 61.5
CSS0030055 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 3.2e-72 277.3 274 54.7
Nitab4.5_0006717g0020 Nicotiana tabacum HOM05D007098 ORTHO05D008793 1.2e-71 275.4 699 58.7
ATR0824G168 Amborella trichopoda HOM05D007098 ORTHO05D008793 2.1e-71 274.6 627 62.8
Dinv38489 Davidia involucrata HOM05D007098 ORTHO05D008793 3.6e-71 273.9 412 58.7
Glyma.02G116500 Glycine max HOM05D007098 ORTHO05D008793 5.2e-70 270.0 614 64.2
Nitab4.5_0001360g0150 Nicotiana tabacum HOM05D007098 ORTHO05D008793 1.1e-69 268.9 701 59.9
Eucgr.B00165 Eucalyptus grandis HOM05D007098 ORTHO05D008793 3.3e-69 267.3 499 75.2
Lj5A101T108 Lonicera japonica HOM05D007098 ORTHO05D008793 6.3e-68 263.1 303 47.2
Sopen03g030770 Solanum pennellii HOM05D007098 ORTHO05D008793 1.1e-67 262.3 621 63.4
VMungo1127G2011 Vigna mungo HOM05D007098 ORTHO05D008793 1.6e-66 258.5 614 62.5
CDE09G0597 Ceratophyllum demersum HOM05D007098 ORTHO05D008793 2.0e-66 258.1 274 49.6
Sc22g0003940 Simmondsia chinensis HOM05D007098 ORTHO05D008793 6.5e-65 253.1 670 59.9
Solyc03g111650.4 Solanum lycopersicum HOM05D007098 ORTHO05D008793 1.9e-64 251.5 272 51.1
Hund21512 Selenicereus undatus HOM05D007098 ORTHO05D008793 1.3e-60 238.8 407 56.0
arahy.Tifrunner.gnm1.ann1.L7HRZC Arachis hypogaea HOM05D007098 ORTHO05D008793 6.3e-60 236.5 353 41.9
Phvul.003G042600 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 5.0e-57 226.9 707 58.1
VMungo1215G0824 Vigna mungo HOM05D007098 ORTHO05D008793 2.1e-55 221.5 259 45.9
Ca_04973_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 4.4e-53 213.8 398 54.0
HPP92_024236 Vanilla planifolia HOM05D007098 ORTHO05D008793 7.5e-45 186.4 510 66.3
SEGI_05165 Sequoiadendron giganteum HOM05D007098 ORTHO05D008793 2.2e-44 184.9 335 50.7
CAN.G472.49 Capsicum annuum HOM05D007098 ORTHO05D008793 2.0e-42 178.3 486 69.3
Glyma.01G059100 Glycine max HOM05D007098 ORTHO05D008793 5.6e-40 170.2 503 67.6
Os05g0294600 Oryza sativa ssp. japonica HOM05D007098 ORTHO05D008793 3.6e-39 167.5 546 59.0
Ca_26530_v3 Cicer arietinum L. HOM05D005706 ORTHO05D008793 1.6e-26 125.6 240 66.2
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 1.0e-25 122.9 114 55.3
Mapoly0023s0082 Marchantia polymorpha HOM05D007098 ORTHO05D008793 3.9e-25 120.9 199 34.7
DCAR_021600 Daucus carota HOM05D007098 ORTHO05D008793 3.6e-23 114.4 80 71.2
Duzib084G0201 Durio zibethinus HOM05D007098 ORTHO05D008793 4.0e-22 110.9 77 68.8
Lj5C101T15 Lonicera japonica HOM05D007098 ORTHO05D008793 5.2e-22 110.5 76 69.7
Pp3c3_19290 Physcomitrium patens HOM05D007098 ORTHO05D008793 6.8e-22 110.2 194 30.4
MBI11_g46065_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 4.4e-21 107.5 77 70.1
Ca_30971_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 2.7e-18 98.2 172 39.0
AagrBONN_evm.TU.Sc2ySwM_228.5130 Anthoceros agrestis HOM05D007098 ORTHO05D008793 3.9e-17 94.4 192 29.7
Zm00001eb154110 Zea mays HOM05D007098 ORTHO05D008793 2.8e-15 88.2 79 59.5
Hma1.2p1_0014F.1_g009960 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 1.1e-14 86.3 62 69.4
Rhsim12G0158500 Rhododendron simsii HOM05D003056 ORTHO05D003422 4.6e-10 70.9 223 23.8
AL3G52990 Arabidopsis lyrata HOM05D003056 ORTHO05D003422 6.0e-10 70.5 189 26.5
Glyma.09G056200 Glycine max HOM05D003056 ORTHO05D003422 3.0e-09 68.2 175 26.9
CARHR109480 Cardamine hirsuta HOM05D003056 ORTHO05D003422 5.1e-09 67.4 156 26.9
ClCG03G003360 Citrullus lanatus HOM05D007098 ORTHO05D008793 5.1e-09 67.4 48 66.7
AT2G18940 Arabidopsis thaliana HOM05D003056 ORTHO05D003422 1.1e-08 66.2 290 22.4
AL2G11780 Arabidopsis lyrata HOM05D003056 ORTHO05D003422 4.3e-08 64.3 188 24.5
PSO063G7185 Papaver somniferum HOM05D003056 ORTHO05D003422 7.3e-08 63.5 204 28.9
TWI18G0691 Tripterygium wilfordii HOM05D006819 ORTHO05D008763 7.3e-08 63.5 174 31.0
MD13G1249100 Malus domestica HOM05D003056 ORTHO05D003422 9.6e-08 63.2 202 22.8
Aa31LG8G16030 Aethionema arabicum HOM05D003056 ORTHO05D003422 1.3e-07 62.8 150 26.0
MD16G1255600 Malus domestica HOM05D003056 ORTHO05D003422 1.6e-07 62.4 186 25.3
BcaB03g12377 Brassica carinata HOM05D000891 ORTHO05D000761 2.1e-07 62.0 184 25.5
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 2.1e-07 62.0 140 25.7
PSO017G1313 Papaver somniferum HOM05D003056 ORTHO05D003422 2.1e-07 62.0 204 29.4
RcHm_v2.0_Chr4g0401161 Rosa chinensis HOM05D003056 ORTHO05D003422 2.1e-07 62.0 167 28.7
SpUn0483_0010 Schrenkiella parvula HOM05D003056 ORTHO05D003422 2.1e-07 62.0 301 23.6
Sp7g34340 Schrenkiella parvula HOM05D000891 ORTHO05D000761 4.8e-07 60.8 183 23.0
Nn8g40410 Nelumbo nucifera HOM05D003056 ORTHO05D003422 6.2e-07 60.5 155 27.1
Sabra05G0103000 Salix brachista HOM05D000891 ORTHO05D000761 6.2e-07 60.5 173 24.3
SMO010G0006 Selaginella moellendorffii HOM05D000855 ORTHO05D000003 6.2e-07 60.5 129 25.6
AT5G25630 Arabidopsis thaliana HOM05D003689 ORTHO05D003950 1.1e-06 59.7 247 21.9
arahy.Tifrunner.gnm1.ann1.0Z4KK5 Arachis hypogaea HOM05D007098 ORTHO05D008793 1.1e-06 59.7 58 51.7
Haze_15114 Corylus avellana HOM05D000891 ORTHO05D000761 1.1e-06 59.7 143 21.7
FvH4_4g07880 Fragaria vesca HOM05D003056 ORTHO05D003422 1.1e-06 59.7 178 26.4
MBI01_g37800_MAGBIO Magnolia biondii HOM05D000891 ORTHO05D000761 1.1e-06 59.7 279 24.0
ATR0618G378 Amborella trichopoda HOM05D000891 ORTHO05D000761 1.4e-06 59.3 151 26.5
A08p22340 Brassica napus HOM05D000891 ORTHO05D000761 1.4e-06 59.3 184 25.5
C03p79970 Brassica napus HOM05D000891 ORTHO05D000761 1.4e-06 59.3 184 25.5
BolC3t20249H Brassica oleracea HOM05D000891 ORTHO05D000761 1.4e-06 59.3 184 25.5
Ah.02g128080 Amaranthus hybridus HOM05D000424 ORTHO05D000355 1.8e-06 58.9 123 25.2
AL6G37510 Arabidopsis lyrata HOM05D003689 ORTHO05D003950 1.8e-06 58.9 144 24.3
FAN17G0903 Fragaria x ananassa HOM05D003056 ORTHO05D003422 1.8e-06 58.9 167 27.5
Potri.005G125400 Populus trichocarpa HOM05D000891 ORTHO05D000761 1.8e-06 58.9 112 26.8
Prupe.3G037500 Prunus persica HOM05D003056 ORTHO05D003422 1.8e-06 58.9 167 27.5
Atru.BG.166.p Acer truncatum HOM05D000001 ORTHO05D000003 2.4e-06 58.5 181 23.8
ATR0661G573 Amborella trichopoda HOM05D003056 ORTHO05D003422 2.4e-06 58.5 166 23.5
BraA08t34190Z Brassica rapa HOM05D000891 ORTHO05D000761 2.4e-06 58.5 184 25.5
CANSAT01G1424 Cannabis sativa HOM05D000891 ORTHO05D000761 2.4e-06 58.5 114 28.1
CiPaw.01G035200 Carya illinoinensis HOM05D000891 ORTHO05D000761 2.4e-06 58.5 158 28.5
FAN07G1351 Fragaria x ananassa HOM05D003056 ORTHO05D003422 2.4e-06 58.5 178 26.4
THA.LOC104819538 Tarenaya hassleriana HOM05D003056 ORTHO05D003422 2.4e-06 58.5 165 30.9
Cpa.g.sc353.5 Carica papaya HOM05D000891 ORTHO05D000761 3.1e-06 58.2 171 28.1
Lsat_1_v5_gn_4_58301 Lactuca sativa HOM05D000891 ORTHO05D000761 3.1e-06 58.2 123 26.0
Lj2P449T26 Lonicera japonica HOM05D000891 ORTHO05D000761 3.1e-06 58.2 112 26.8
Aa31LG6G13480 Aethionema arabicum HOM05D000891 ORTHO05D000761 4.0e-06 57.8 144 20.8
Aa31LG8G15540 Aethionema arabicum HOM05D000891 ORTHO05D000761 4.0e-06 57.8 183 24.0
Os01g0611900 Oryza sativa ssp. japonica HOM05D006287 ORTHO05D008192 4.0e-06 57.8 157 28.0
CARHR245040 Cardamine hirsuta HOM05D000891 ORTHO05D000761 6.9e-06 57.0 183 22.4
FAN12G3026 Fragaria x ananassa HOM05D003056 ORTHO05D003422 6.9e-06 57.0 178 25.8
AL7G14330 Arabidopsis lyrata HOM05D000891 ORTHO05D000761 9.0e-06 56.6 183 21.3
Nitab4.5_0000628g0030 Nicotiana tabacum HOM05D000891 ORTHO05D000761 9.0e-06 56.6 124 25.8


User provided reference genes

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