Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p30340 Brassica napus HOM05D000104 ORTHO05D004024 0.0e+00 1284.2 715 100.0
BcaC01g05099 Brassica carinata HOM05D000104 ORTHO05D004024 0.0e+00 1202.6 697 97.0
BolC3t15384H Brassica oleracea HOM05D000104 ORTHO05D004024 0.0e+00 1150.6 703 92.3
A03p25440 Brassica napus HOM05D000104 ORTHO05D004024 0.0e+00 1100.5 700 90.9
BraA03t11763Z Brassica rapa HOM05D000104 ORTHO05D004024 0.0e+00 1096.6 709 89.6
BcaB01g03241 Brassica carinata HOM05D000104 ORTHO05D004024 8.1e-273 943.7 706 79.3
BraA04t18883Z Brassica rapa HOM05D000104 ORTHO05D004024 1.3e-270 936.4 708 79.1
BolC4t28700H Brassica oleracea HOM05D000104 ORTHO05D004024 2.0e-263 912.5 712 76.1
Sp4g28080 Schrenkiella parvula HOM05D000104 ORTHO05D004024 4.9e-262 907.9 713 75.6
A04p34220 Brassica napus HOM05D000104 ORTHO05D004024 7.6e-255 884.0 708 76.1
AT2G46020 Arabidopsis thaliana HOM05D000104 ORTHO05D004024 1.1e-250 870.2 718 74.1
Carub.0004s2871 Capsella rubella HOM05D000104 ORTHO05D004024 1.5e-250 869.8 715 74.0
CARHR141280 Cardamine hirsuta HOM05D000104 ORTHO05D004024 3.6e-249 865.1 716 73.9
C04p72040 Brassica napus HOM05D000104 ORTHO05D004024 1.4e-245 853.2 712 72.5
AL4G45240 Arabidopsis lyrata HOM05D000104 ORTHO05D004024 3.7e-241 838.6 595 79.5
Thhalv10001280m.g Eutrema salsugineum HOM05D000104 ORTHO05D004024 5.8e-239 831.2 705 72.1
Aa31LG1G27420 Aethionema arabicum HOM05D000104 ORTHO05D004024 9.9e-239 830.5 646 73.5
THA.LOC104803063 Tarenaya hassleriana HOM05D000104 ORTHO05D004024 1.7e-206 723.4 721 64.8
Thecc.01G357200 Theobroma cacao HOM05D000104 ORTHO05D004024 4.1e-144 516.2 764 51.2
Potri.014G086500 Populus trichocarpa HOM05D000104 ORTHO05D004024 5.6e-141 505.8 684 51.6
Haze_15527 Corylus avellana HOM05D000104 ORTHO05D004024 1.9e-136 490.7 694 50.3
Atru.chr5.516 Acer truncatum HOM05D000104 ORTHO05D004024 2.4e-136 490.3 685 52.3
Duzib138G0831 Durio zibethinus HOM05D000104 ORTHO05D004024 1.6e-135 487.6 763 50.2
Gorai.008G121100 Gossypium raimondii HOM05D000104 ORTHO05D004024 4.6e-135 486.1 751 48.5
QL04p053980 Quercus lobata HOM05D000104 ORTHO05D004024 4.6e-135 486.1 686 50.4
Duzib268G0692 Durio zibethinus HOM05D000104 ORTHO05D004024 7.8e-135 485.3 762 50.5
Potri.002G160900 Populus trichocarpa HOM05D000104 ORTHO05D004024 7.8e-135 485.3 695 50.4
Dinv32495 Davidia involucrata HOM05D000104 ORTHO05D004024 1.3e-134 484.6 686 51.2
Gohir.A12G108600 Gossypium hirsutum HOM05D000104 ORTHO05D004024 5.1e-134 482.6 756 49.2
Manes.01G255300 Manihot esculenta HOM05D000104 ORTHO05D004024 4.8e-132 476.1 751 50.5
CiPaw.01G063200 Carya illinoinensis HOM05D000104 ORTHO05D004024 3.1e-131 473.4 741 48.6
Cfa003903 Carpinus fangiana HOM05D000104 ORTHO05D004024 5.3e-131 472.6 691 50.1
Prupe.2G172900 Prunus persica HOM05D000104 ORTHO05D004024 1.2e-130 471.5 763 46.8
Gohir.D12G111700 Gossypium hirsutum HOM05D000104 ORTHO05D004024 2.6e-130 470.3 751 47.8
Ciclev10018438m.g Citrus clementina HOM05D000104 ORTHO05D004024 4.9e-129 466.1 684 50.1
Sabra02G0127900 Salix brachista HOM05D000104 ORTHO05D004024 6.4e-129 465.7 688 49.4
Gohir.A11G090000 Gossypium hirsutum HOM05D000104 ORTHO05D004024 9.3e-128 461.8 760 49.1
Gohir.A07G141800 Gossypium hirsutum HOM05D000104 ORTHO05D004024 1.8e-126 457.6 745 48.5
CANSAT56G1829 Cannabis sativa HOM05D000104 ORTHO05D004024 2.3e-126 457.2 760 48.4
Gorai.007G100800 Gossypium raimondii HOM05D000104 ORTHO05D004024 5.1e-126 456.1 755 48.3
CiPaw.02G032300 Carya illinoinensis HOM05D000104 ORTHO05D004024 1.5e-125 454.5 700 47.4
Gorai.001G168700 Gossypium raimondii HOM05D000104 ORTHO05D004024 1.6e-124 451.1 740 48.1
COL.COLO4_12729 Corchorus olitorius HOM05D000104 ORTHO05D004024 3.7e-124 449.9 753 46.5
Glyma.16G035100 Glycine max HOM05D000104 ORTHO05D004024 1.5e-122 444.5 675 46.7
Phvul.010G100100 Phaseolus vulgaris HOM05D000104 ORTHO05D004024 1.5e-122 444.5 729 47.3
Manes.05G032800 Manihot esculenta HOM05D000104 ORTHO05D004024 2.6e-122 443.7 688 48.1
Gohir.D11G094400 Gossypium hirsutum HOM05D000104 ORTHO05D004024 5.8e-122 442.6 756 47.8
RcHm_v2.0_Chr1g0356661 Rosa chinensis HOM05D000104 ORTHO05D004024 4.9e-121 439.5 763 47.3
Glyma.07G069400 Glycine max HOM05D000104 ORTHO05D004024 1.1e-120 438.3 738 47.3
FAN06G2979 Fragaria x ananassa HOM05D000104 ORTHO05D004024 1.9e-120 437.6 693 48.5
VMungo0331G0955 Vigna mungo HOM05D000104 ORTHO05D004024 2.4e-120 437.2 731 47.5
Gohir.D07G147500 Gossypium hirsutum HOM05D000104 ORTHO05D004024 4.2e-120 436.4 740 47.3
MD07G1134800 Malus domestica HOM05D000104 ORTHO05D004024 1.0e-118 431.8 689 46.2
Lalb_Chr17g0339491 Lupinus albus HOM05D000104 ORTHO05D004024 3.9e-118 429.9 681 46.4
TAR375G0536 Trochodendron aralioides HOM05D000104 ORTHO05D004024 5.1e-118 429.5 691 48.0
Sed0026227 Sechium edule HOM05D000104 ORTHO05D004024 6.7e-118 429.1 745 45.8
Actinidia20892 Actinidia chinensis HOM05D000104 ORTHO05D004024 1.9e-117 427.6 688 45.8
FAN06G0929 Fragaria x ananassa HOM05D000104 ORTHO05D004024 3.3e-117 426.8 690 47.5
MELO3C006101.2 Cucumis melo HOM05D000104 ORTHO05D004024 5.6e-117 426.0 748 46.4
TWI23G0799 Tripterygium wilfordii HOM05D000104 ORTHO05D004024 5.6e-117 426.0 704 45.7
Ca_23613_v3 Cicer arietinum L. HOM05D000104 ORTHO05D004024 2.1e-116 424.1 686 45.8
CsaV3_3G008840 Cucumis sativus L. HOM05D000104 ORTHO05D004024 3.7e-116 423.3 748 46.4
arahy.Tifrunner.gnm1.ann1.AXD4AC Arachis hypogaea HOM05D000104 ORTHO05D004024 4.8e-116 422.9 685 46.0
Lalb_Chr10g0096851 Lupinus albus HOM05D000104 ORTHO05D004024 1.4e-115 421.4 745 46.2
TAR374G1169 Trochodendron aralioides HOM05D000104 ORTHO05D004024 1.8e-115 421.0 772 44.9
Lj3g0005670 Lotus japonicus HOM05D000104 ORTHO05D004024 3.1e-115 420.2 757 46.0
ClCG05G001450 Citrullus lanatus HOM05D000104 ORTHO05D004024 4.0e-115 419.9 691 46.0
arahy.Tifrunner.gnm1.ann1.8BN0DB Arachis hypogaea HOM05D000104 ORTHO05D004024 9.0e-115 418.7 750 45.6
Glyma.09G257900 Glycine max HOM05D000104 ORTHO05D004024 3.4e-114 416.8 674 46.4
Glyma.18G234700 Glycine max HOM05D000104 ORTHO05D004024 5.8e-114 416.0 675 45.9
Lj1g0023113 Lotus japonicus HOM05D000104 ORTHO05D004024 7.6e-114 415.6 674 45.4
Sed0000619 Sechium edule HOM05D000104 ORTHO05D004024 2.2e-113 414.1 754 44.6
Sc01g0003500 Simmondsia chinensis HOM05D000104 ORTHO05D004024 1.1e-112 411.8 694 45.1
FAN03G1309 Fragaria x ananassa HOM05D000104 ORTHO05D004024 4.2e-112 409.8 694 47.0
FAN01G0653 Fragaria x ananassa HOM05D000104 ORTHO05D004024 1.2e-111 408.3 708 46.0
VMungo1383G0174 Vigna mungo HOM05D000104 ORTHO05D004024 1.6e-111 407.9 675 45.5
Medtr8g030550 Medicago truncatula HOM05D000104 ORTHO05D004024 4.6e-111 406.4 678 45.4
FvH4_7g14720 Fragaria vesca HOM05D000104 ORTHO05D004024 6.0e-111 406.0 693 46.5
Peaxi162Scf00020g00814 Petunia axillaris HOM05D000104 ORTHO05D004024 1.3e-110 404.8 691 44.4
FAN10G0475 Fragaria x ananassa HOM05D000104 ORTHO05D004024 1.8e-110 404.4 695 46.2
FAN10G3702 Fragaria x ananassa HOM05D000104 ORTHO05D004024 1.5e-109 401.4 695 46.2
Nn6g33365 Nelumbo nucifera HOM05D000104 ORTHO05D004024 4.3e-109 399.8 759 45.1
CSS0043783 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D004024 2.8e-108 397.1 694 45.8
Eucgr.D02305 Eucalyptus grandis HOM05D000104 ORTHO05D004024 2.8e-108 397.1 680 44.9
Phvul.008G061000 Phaseolus vulgaris HOM05D000104 ORTHO05D004024 2.8e-108 397.1 677 44.0
MD01G1065800 Malus domestica HOM05D000104 ORTHO05D004024 2.4e-107 394.0 684 44.0
Nn1g01574 Nelumbo nucifera HOM05D000104 ORTHO05D004024 2.6e-106 390.6 759 44.0
CAN.G78.94 Capsicum annuum HOM05D000104 ORTHO05D004024 3.4e-106 390.2 686 44.6
TPR.G37713 Trifolium pratense HOM05D000104 ORTHO05D004024 1.7e-105 387.9 690 44.2
Solyc01g094800.4 Solanum lycopersicum HOM05D000104 ORTHO05D004024 5.5e-104 382.9 683 43.5
AUR62022585 Chenopodium quinoa HOM05D000104 ORTHO05D004024 7.2e-104 382.5 689 43.4
MBI18_g02828_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D004024 1.6e-103 381.3 683 44.2
AUR62004379 Chenopodium quinoa HOM05D000104 ORTHO05D004024 2.1e-103 380.9 689 43.4
SalBow3G2941 Salvia bowleyana HOM05D000104 ORTHO05D004024 6.7e-102 375.9 681 42.9
EL10Ac1g00397 Beta vulgaris HOM05D000104 ORTHO05D004024 1.1e-101 375.2 682 42.7
Cc02_g38210 Coffea canephora HOM05D000104 ORTHO05D004024 7.4e-101 372.5 686 43.7
GSVIVG01026952001 Vitis vinifera HOM05D000104 ORTHO05D004024 1.3e-100 371.7 653 45.9
Ah.05g180470 Amaranthus hybridus HOM05D000104 ORTHO05D004024 2.2e-100 370.9 744 44.1
Lj7C510T14 Lonicera japonica HOM05D000104 ORTHO05D004024 1.4e-99 368.2 701 42.4
Psat3g107600 Pisum sativum HOM05D000104 ORTHO05D004024 2.4e-99 367.5 740 43.9
C07p31550 Brassica napus HOM05D000104 ORTHO05D004024 5.3e-99 366.3 504 53.0
Sopen01g038570 Solanum pennellii HOM05D000104 ORTHO05D004024 4.5e-98 363.2 691 42.0
Migut.B01772 Erythranthe guttata HOM05D000104 ORTHO05D004024 1.7e-97 361.3 685 41.3
arahy.Tifrunner.gnm1.ann1.03HQ0D Arachis hypogaea HOM05D000104 ORTHO05D004024 1.0e-94 352.1 734 44.7
arahy.Tifrunner.gnm1.ann1.K947VD Arachis hypogaea HOM05D000104 ORTHO05D004024 1.4e-94 351.7 735 41.4
vmacro13264 Vaccinium macrocarpon HOM05D000104 ORTHO05D004024 1.1e-93 348.6 666 43.4
Hund16655 Selenicereus undatus HOM05D000104 ORTHO05D004024 1.7e-92 344.7 687 41.8
Aqoxy7G00269 Aquilegia oxysepala HOM05D000104 ORTHO05D004024 2.2e-92 344.4 698 40.8
Medtr7g078090 Medicago truncatula HOM05D000104 ORTHO05D004024 1.1e-91 342.0 678 41.9
Dinv43832 Davidia involucrata HOM05D000104 ORTHO05D004024 1.4e-91 341.7 616 45.1
MSTRG.20843 Avicennia marina HOM05D000104 ORTHO05D004024 1.8e-91 341.3 676 40.2
SGA_v2.0_scaffold4G02298 Striga asiatica HOM05D000104 ORTHO05D004024 2.0e-90 337.8 690 41.0
DCAR_005356 Daucus carota HOM05D000104 ORTHO05D004024 6.5e-89 332.8 662 41.2
Rhsim07G0013500 Rhododendron simsii HOM05D000104 ORTHO05D004024 1.8e-86 324.7 664 41.9
TWI14G1411 Tripterygium wilfordii HOM05D000104 ORTHO05D004024 3.0e-86 323.9 665 40.6
Rhsim01G0163000 Rhododendron simsii HOM05D000104 ORTHO05D004024 1.3e-84 318.5 673 40.7
PSO478G3174 Papaver somniferum HOM05D000104 ORTHO05D004024 1.1e-83 315.5 752 39.1
HanXRQChr16g0522331 Helianthus annuus HOM05D000104 ORTHO05D004024 5.9e-82 309.7 681 39.2
HanXRQChr16g0522401 Helianthus annuus HOM05D000104 ORTHO05D004024 5.9e-82 309.7 681 39.2
TPR.G16549 Trifolium pratense HOM05D000104 ORTHO05D004024 7.7e-82 309.3 700 38.3
SHI13459 Sapria himalayana HOM05D000104 ORTHO05D004024 1.0e-81 308.9 665 41.8
PGR031G3697 Punica granatum HOM05D000104 ORTHO05D004024 1.7e-81 308.1 789 38.8
Psat4g212400 Pisum sativum HOM05D000104 ORTHO05D004024 6.5e-81 306.2 663 38.5
ECA234G0162 Erigeron canadensis HOM05D000104 ORTHO05D004024 1.5e-80 305.1 733 39.2
Ca_07936_v3 Cicer arietinum L. HOM05D000104 ORTHO05D004024 2.5e-80 304.3 733 39.3
Cpa.g.sc11.24 Carica papaya HOM05D000104 ORTHO05D004024 9.4e-80 302.4 300 62.0
MSTRG.17279 Avicennia marina HOM05D000104 ORTHO05D004024 5.2e-78 296.6 702 38.3
PSO782G4172 Papaver somniferum HOM05D000104 ORTHO05D004024 3.3e-77 293.9 751 37.7
ATR0680G059 Amborella trichopoda HOM05D000104 ORTHO05D004024 2.0e-74 284.6 690 37.8
CDE06G1551 Ceratophyllum demersum HOM05D000104 ORTHO05D004024 9.4e-72 275.8 754 37.9
ECA236G4125 Erigeron canadensis HOM05D000104 ORTHO05D004024 1.6e-71 275.0 666 38.9
BcaC06g34219 Brassica carinata HOM05D000104 ORTHO05D004024 3.6e-71 273.9 577 39.7
HanXRQChr17g0562421 Helianthus annuus HOM05D000104 ORTHO05D004024 2.0e-69 268.1 651 37.6
DCAR_025198 Daucus carota HOM05D000104 ORTHO05D004024 1.3e-68 265.4 658 37.5
HanXRQChr04g0121221 Helianthus annuus HOM05D000104 ORTHO05D004024 5.4e-59 233.4 656 35.5
Lsat_1_v5_gn_7_4220 Lactuca sativa HOM05D000104 ORTHO05D004024 5.4e-59 233.4 650 37.4
Os02g0114033 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D004024 5.9e-58 229.9 650 35.4
HPP92_025786 Vanilla planifolia HOM05D000104 ORTHO05D004024 6.6e-57 226.5 756 33.5
MBI17_g33790_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D004024 1.8e-54 218.4 335 46.9
vmacro20931 Vaccinium macrocarpon HOM05D000104 ORTHO05D004024 2.0e-53 214.9 667 35.2
Zm00001eb229760 Zea mays HOM05D000104 ORTHO05D004024 6.6e-49 199.9 680 33.1
CDE02G2573 Ceratophyllum demersum HOM05D000104 ORTHO05D004024 2.2e-44 184.9 347 40.3
SEGI_28802 Sequoiadendron giganteum HOM05D000104 ORTHO05D004024 2.2e-44 184.9 603 34.5
MBI17_g33791_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D004024 1.4e-35 155.6 290 43.4
HPP92_025793 Vanilla planifolia HOM05D000104 ORTHO05D004024 1.5e-32 145.6 262 38.9
unitig_8.g3795 Utricularia gibba HOM05D000104 ORTHO05D017821 1.9e-32 145.2 551 33.4
Oeu060227.1 Olea europaea HOM05D000104 ORTHO05D004024 5.4e-27 127.1 344 35.2
unitig_22.g5348 Utricularia gibba HOM05D000104 ORTHO05D004024 1.1e-22 112.8 248 39.5
Lsat_1_v5_gn_4_35861 Lactuca sativa HOM05D000104 ORTHO05D004024 3.1e-22 111.3 679 25.0
HPP92_022593 Vanilla planifolia HOM05D000104 ORTHO05D004024 1.1e-19 102.8 540 30.6
CDE02G1733 Ceratophyllum demersum HOM05D000104 ORTHO05D017821 1.5e-16 92.4 250 36.4
unitig_8.g3794 Utricularia gibba HOM05D000104 ORTHO05D004024 3.1e-14 84.7 91 52.7
SEGI_24766 Sequoiadendron giganteum HOM05D000104 ORTHO05D004024 3.4e-13 81.3 334 29.6
HPP92_022592 Vanilla planifolia HOM05D000104 ORTHO05D004024 3.4e-13 81.3 67 56.7
Oeu060229.1 Olea europaea HOM05D000104 ORTHO05D017821 8.4e-12 76.6 191 37.7
AagrBONN_evm.TU.Sc2ySwM_228.1015 Anthoceros agrestis HOM05D000104 ORTHO05D004024 4.6e-10 70.9 316 28.5
unitig_22.g5347 Utricularia gibba HOM05D000104 ORTHO05D004024 6.0e-10 70.5 182 30.2
Mapoly0001s0041 Marchantia polymorpha HOM05D000104 ORTHO05D004024 1.8e-09 68.9 277 29.6
HPP92_025792 Vanilla planifolia HOM05D000104 ORTHO05D017821 1.9e-08 65.5 197 35.5
TPR.G21176 Trifolium pratense HOM05D000104 ORTHO05D017821 2.5e-08 65.1 118 41.5
Dinv43833 Davidia involucrata HOM05D000104 ORTHO05D004024 1.3e-07 62.8 40 72.5
unitig_22.g5349 Utricularia gibba HOM05D000104 ORTHO05D017821 1.3e-07 62.8 183 35.5


User provided reference genes

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