Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p15070 Brassica napus HOM05D004410 ORTHO05D006134 7.5e-153 543.9 289 100.0
BolC3t13949H Brassica oleracea HOM05D004410 ORTHO05D006134 7.5e-153 543.9 289 100.0
Sp6g19010 Schrenkiella parvula HOM05D004410 ORTHO05D006134 1.9e-143 512.7 289 93.8
Thhalv10014295m.g Eutrema salsugineum HOM05D004410 ORTHO05D006134 7.0e-143 510.8 289 91.0
A10p17910 Brassica napus HOM05D004410 ORTHO05D006134 6.8e-138 494.2 289 92.7
A03p12910 Brassica napus HOM05D004410 ORTHO05D006134 2.6e-137 492.3 289 92.4
AL8G33250 Arabidopsis lyrata HOM05D004410 ORTHO05D006134 4.9e-136 488.0 290 86.6
Aa31sc36G40 Aethionema arabicum HOM05D004410 ORTHO05D006134 3.2e-135 485.3 293 86.3
CARHR271080 Cardamine hirsuta HOM05D004410 ORTHO05D006134 6.0e-134 481.1 292 84.2
Carub.0008s1778 Capsella rubella HOM05D004410 ORTHO05D006134 7.8e-134 480.7 290 84.8
BcaB05g22331 Brassica carinata HOM05D004410 ORTHO05D006134 3.9e-133 478.4 289 87.5
AT5G57280 Arabidopsis thaliana HOM05D004410 ORTHO05D006134 4.7e-131 471.5 290 84.1
THA.LOC104817784 Tarenaya hassleriana HOM05D004410 ORTHO05D006134 2.7e-126 455.7 294 80.6
Cpa.g.sc95.31 Carica papaya HOM05D004410 ORTHO05D006134 6.0e-126 454.5 291 79.0
Gorai.004G025800 Gossypium raimondii HOM05D004410 ORTHO05D006134 9.6e-124 447.2 292 78.1
Thecc.09G180400 Theobroma cacao HOM05D004410 ORTHO05D006134 1.2e-123 446.8 292 78.1
Gohir.D08G028700 Gossypium hirsutum HOM05D004410 ORTHO05D006134 6.2e-123 444.5 292 77.4
TAR626G0361 Trochodendron aralioides HOM05D004410 ORTHO05D006134 1.1e-122 443.7 294 77.9
COL.COLO4_23558 Corchorus olitorius HOM05D004410 ORTHO05D006134 5.3e-122 441.4 292 76.7
CANSAT56G1932 Cannabis sativa HOM05D004410 ORTHO05D006134 1.2e-121 440.3 294 76.2
Potri.001G338700 Populus trichocarpa HOM05D004410 ORTHO05D006134 1.2e-121 440.3 291 74.9
CiPaw.08G034000 Carya illinoinensis HOM05D004410 ORTHO05D006134 1.5e-121 439.9 292 75.3
Ciclev10009088m.g Citrus clementina HOM05D004410 ORTHO05D006134 1.5e-121 439.9 294 75.5
Eucgr.L02823 Eucalyptus grandis HOM05D004410 ORTHO05D006134 1.5e-121 439.9 291 76.6
Duzib170G0185 Durio zibethinus HOM05D004410 ORTHO05D006134 2.0e-121 439.5 292 76.7
Eucgr.C02260 Eucalyptus grandis HOM05D004410 ORTHO05D006134 2.6e-121 439.1 291 76.3
Cfa005486 Carpinus fangiana HOM05D004410 ORTHO05D006134 1.3e-120 436.8 292 75.7
Glyma.17G060900 Glycine max HOM05D004410 ORTHO05D006134 1.3e-120 436.8 291 78.4
Gohir.A08G018100 Gossypium hirsutum HOM05D004410 ORTHO05D006134 1.3e-120 436.8 292 76.0
Lj5C681T1 Lonicera japonica HOM05D004410 ORTHO05D006134 1.3e-120 436.8 291 79.0
Lj7C624G8 Lonicera japonica HOM05D004410 ORTHO05D006134 2.9e-120 435.6 293 79.2
Potri.018G049800 Populus trichocarpa HOM05D004410 ORTHO05D006134 2.9e-120 435.6 291 74.2
Dinv26445 Davidia involucrata HOM05D004410 ORTHO05D006134 6.4e-120 434.5 293 77.1
BraA03t10599Z Brassica rapa HOM05D004410 ORTHO05D006134 8.4e-120 434.1 257 92.2
Cfa013429 Carpinus fangiana HOM05D004410 ORTHO05D006134 1.1e-119 433.7 292 75.3
Manes.06G021200 Manihot esculenta HOM05D004410 ORTHO05D006134 1.4e-119 433.3 294 75.2
PSO210G0218 Papaver somniferum HOM05D004410 ORTHO05D006134 1.4e-119 433.3 292 77.4
CSS0020745 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 1.9e-119 433.0 293 75.1
Solyc06g072250.3 Solanum lycopersicum HOM05D004410 ORTHO05D006134 3.2e-119 432.2 290 73.8
Sopen06g028570 Solanum pennellii HOM05D004410 ORTHO05D006134 3.2e-119 432.2 290 73.8
Oeu038397.1 Olea europaea HOM05D004410 ORTHO05D006134 5.4e-119 431.4 294 74.8
PSO210G4717 Papaver somniferum HOM05D004410 ORTHO05D006134 5.4e-119 431.4 292 77.1
Sabra03G0001500 Salix brachista HOM05D004410 ORTHO05D006134 3.5e-118 428.7 305 71.8
CAN.G65.73 Capsicum annuum HOM05D004410 ORTHO05D006134 4.6e-118 428.3 290 73.4
GSVIVG01010906001 Vitis vinifera HOM05D004410 ORTHO05D006134 4.6e-118 428.3 292 74.0
Rhsim12G0146500 Rhododendron simsii HOM05D004410 ORTHO05D006134 1.0e-117 427.2 290 75.9
Nitab4.5_0000339g0120 Nicotiana tabacum HOM05D004410 ORTHO05D006134 3.0e-117 425.6 290 76.2
SalBow8G1532 Salvia bowleyana HOM05D004410 ORTHO05D006134 3.9e-117 425.2 293 77.8
ECA236G3126 Erigeron canadensis HOM05D004410 ORTHO05D006134 5.1e-117 424.9 294 77.9
Ah.14g083650 Amaranthus hybridus HOM05D004410 ORTHO05D006134 6.6e-117 424.5 291 73.5
arahy.Tifrunner.gnm1.ann1.2H7I9L Arachis hypogaea HOM05D004410 ORTHO05D006134 6.6e-117 424.5 290 74.1
PGR044G0126 Punica granatum HOM05D004410 ORTHO05D006134 6.6e-117 424.5 322 68.6
VMungo1215G0063 Vigna mungo HOM05D004410 ORTHO05D006134 6.6e-117 424.5 292 76.4
arahy.Tifrunner.gnm1.ann1.FB81IM Arachis hypogaea HOM05D004410 ORTHO05D006134 8.7e-117 424.1 290 74.1
AUR62021333 Chenopodium quinoa HOM05D004410 ORTHO05D006134 8.7e-117 424.1 293 73.7
Lalb_Chr07g0180591 Lupinus albus HOM05D004410 ORTHO05D006134 1.1e-116 423.7 291 73.9
QL11p004818 Quercus lobata HOM05D004410 ORTHO05D006134 1.1e-116 423.7 291 75.9
FvH4_4g07620 Fragaria vesca HOM05D004410 ORTHO05D006134 1.9e-116 422.9 290 77.6
RcHm_v2.0_Chr4g0400231 Rosa chinensis HOM05D004410 ORTHO05D006134 1.9e-116 422.9 290 73.8
Lsat_1_v5_gn_8_69561 Lactuca sativa HOM05D004410 ORTHO05D005614 2.5e-116 422.5 297 75.8
Hund26318 Selenicereus undatus HOM05D004410 ORTHO05D006134 4.3e-116 421.8 292 72.9
CSS0004658 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 9.6e-116 420.6 293 73.7
Migut.D01496 Erythranthe guttata HOM05D004410 ORTHO05D006134 1.3e-115 420.2 293 73.0
Sc14g0001390 Simmondsia chinensis HOM05D004410 ORTHO05D006134 1.3e-115 420.2 292 71.6
Cc09_g07700 Coffea canephora HOM05D004410 ORTHO05D006134 3.6e-115 418.7 294 75.5
TWI36G0301 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 3.6e-115 418.7 292 71.9
MSTRG.4318 Avicennia marina HOM05D004410 ORTHO05D006134 6.2e-115 417.9 292 73.6
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 6.2e-115 417.9 282 74.8
HanXRQChr06g0179561 Helianthus annuus HOM05D004410 ORTHO05D006134 8.1e-115 417.5 292 76.0
FAN22G1351 Fragaria x ananassa HOM05D004410 ORTHO05D006134 1.4e-114 416.8 290 75.9
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 3.1e-114 415.6 285 75.1
AUR62033248 Chenopodium quinoa HOM05D004410 ORTHO05D006134 4.0e-114 415.2 289 73.0
TWI75G1515 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 4.0e-114 415.2 326 66.0
EL10Ac8g18319 Beta vulgaris HOM05D004410 ORTHO05D006134 5.3e-114 414.8 294 73.5
FAN07G0604 Fragaria x ananassa HOM05D004410 ORTHO05D006134 6.9e-114 414.5 290 76.2
TPR.G5373 Trifolium pratense HOM05D004410 ORTHO05D006134 2.6e-113 412.5 292 72.6
CANSAT78G0037 Cannabis sativa HOM05D004410 ORTHO05D006134 4.5e-113 411.8 289 71.3
CANSAT78G1648 Cannabis sativa HOM05D004410 ORTHO05D006134 4.5e-113 411.8 289 71.3
Oeu016123.1 Olea europaea HOM05D004410 ORTHO05D006134 9.9e-113 410.6 323 68.1
CANSAT21G0708 Cannabis sativa HOM05D004410 ORTHO05D006134 2.9e-112 409.1 289 72.0
Nn8g40987 Nelumbo nucifera HOM05D004410 ORTHO05D006134 2.9e-112 409.1 272 75.4
FAN12G4072 Fragaria x ananassa HOM05D004410 ORTHO05D006134 3.8e-112 408.7 310 72.3
FAN17G1447 Fragaria x ananassa HOM05D004410 ORTHO05D006134 3.8e-112 408.7 308 72.4
Aqoxy3G03862 Aquilegia oxysepala HOM05D004410 ORTHO05D006134 6.4e-112 407.9 293 75.1
CANSAT78G1079 Cannabis sativa HOM05D004410 ORTHO05D006134 6.4e-112 407.9 290 71.4
CsaV3_5G008380 Cucumis sativus L. HOM05D004410 ORTHO05D006134 1.4e-111 406.8 291 71.5
MELO3C008596.2 Cucumis melo HOM05D004410 ORTHO05D006134 3.2e-111 405.6 291 71.5
Psat0s4042g0040 Pisum sativum HOM05D004410 ORTHO05D006134 7.1e-111 404.4 293 73.7
Sabra03G0004700 Salix brachista HOM05D004410 ORTHO05D006134 2.7e-110 402.5 324 66.0
unitig_26.g9274 Utricularia gibba HOM05D004410 ORTHO05D006134 6.0e-110 401.4 293 73.4
MELO3C008923.2 Cucumis melo HOM05D004410 ORTHO05D006134 5.1e-109 398.3 291 69.8
CDE06G0833 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 8.7e-109 397.5 291 68.0
Glyma.13G099200 Glycine max HOM05D004410 ORTHO05D006134 8.7e-109 397.5 291 75.6
Lj3g0017980 Lotus japonicus HOM05D004410 ORTHO05D006134 1.1e-108 397.1 293 73.7
Sed0003098 Sechium edule HOM05D004410 ORTHO05D006134 3.3e-108 395.6 291 68.7
Phvul.003G141775 Phaseolus vulgaris HOM05D004410 ORTHO05D006134 5.6e-108 394.8 292 72.9
PGSC0003DMG400027051 Solanum tuberosum HOM05D004410 ORTHO05D006134 9.6e-108 394.0 292 72.6
Lj3g0011551 Lotus japonicus HOM05D004410 ORTHO05D006134 8.1e-107 391.0 294 72.4
Zm00001eb258180 Zea mays HOM05D004410 ORTHO05D006134 6.9e-106 387.9 292 66.1
Prupe.1G079400 Prunus persica HOM05D004410 ORTHO05D006134 1.5e-105 386.7 289 72.7
MD13G1245300 Malus domestica HOM05D004410 ORTHO05D006134 1.7e-104 383.3 292 72.3
Ah.09g230150 Amaranthus hybridus HOM05D004410 ORTHO05D006134 2.2e-104 382.9 291 69.4
Peaxi162Scf00171g00233 Petunia axillaris HOM05D004410 ORTHO05D006134 4.9e-104 381.7 269 71.7
SEGI_20363 Sequoiadendron giganteum HOM05D004410 ORTHO05D006134 2.5e-103 379.4 291 66.3
Os02g0804300 Oryza sativa ssp. japonica HOM05D004410 ORTHO05D006134 4.2e-103 378.6 296 64.5
MD16G1253000 Malus domestica HOM05D004410 ORTHO05D006134 2.3e-101 372.9 291 71.5
Pp3c12_7620 Physcomitrium patens HOM05D004410 ORTHO05D006134 1.1e-100 370.5 297 64.6
Haze_21974 Corylus avellana HOM05D004410 ORTHO05D006134 1.9e-100 369.8 219 82.6
Medtr4g007420 Medicago truncatula HOM05D004410 ORTHO05D006134 2.8e-99 365.9 290 63.8
vmacro16466 Vaccinium macrocarpon HOM05D004410 ORTHO05D006134 4.8e-99 365.2 385 55.8
Mapoly0020s0093 Marchantia polymorpha HOM05D004410 ORTHO05D006134 8.2e-99 364.4 292 66.1
ClCG11G007510 Citrullus lanatus HOM05D004410 ORTHO05D006134 4.5e-97 358.6 291 67.0
AagrBONN_evm.TU.Sc2ySwM_344.4914 Anthoceros agrestis HOM05D004410 ORTHO05D006134 1.3e-96 357.1 295 66.4
SGA_v2.0_scaffold36G14352 Striga asiatica HOM05D004410 ORTHO05D006134 1.0e-93 347.4 218 76.6
CANSAT78G0098 Cannabis sativa HOM05D004410 ORTHO05D006134 3.0e-93 345.9 206 81.1
SMO367G1042 Selaginella moellendorffii HOM05D004410 ORTHO05D006134 3.0e-93 345.9 296 63.5
TPR.G26767 Trifolium pratense HOM05D004410 ORTHO05D006134 1.9e-92 343.2 291 61.5
SGA_v2.0_scaffold172G39079 Striga asiatica HOM05D004410 ORTHO05D006134 1.3e-88 330.5 191 82.7
Medtr4g127640 Medicago truncatula HOM05D004410 ORTHO05D006134 2.5e-87 326.2 238 69.3
Nitab4.5_0003040g0070 Nicotiana tabacum HOM05D004410 ORTHO05D006134 4.2e-87 325.5 291 60.5
ATR0561G198 Amborella trichopoda HOM05D004410 ORTHO05D006134 5.5e-87 325.1 205 75.6
Cre09.g398104 Chlamydomonas reinhardtii HOM05D004410 ORTHO05D006134 8.2e-83 311.2 285 60.0
Nitab4.5_0000782g0050 Nicotiana tabacum HOM05D004410 ORTHO05D006134 1.1e-82 310.8 298 58.1
Atru.chr12.1677 Acer truncatum HOM05D004410 ORTHO05D006134 1.2e-81 307.4 294 59.5
Actinidia40404 Actinidia chinensis HOM05D004410 ORTHO05D006134 2.2e-80 303.1 292 58.2
CBR_g3667 Chara braunii HOM05D004410 ORTHO05D006134 9.4e-79 297.7 288 55.9
Dinv25402 Davidia involucrata HOM05D004410 ORTHO05D006134 6.7e-77 291.6 208 73.6
MCO01G124 Micromonas commoda HOM05D004410 ORTHO05D006134 6.7e-77 291.6 300 51.7
PRCOL_00001013 Prasinoderma coloniale HOM05D004410 ORTHO05D006134 7.0e-74 281.6 295 51.9
AagrBONN_evm.TU.Sc2ySwM_344.3468 Anthoceros agrestis HOM05D004410 ORTHO05D006134 1.0e-72 277.7 191 69.6
MBI13_g31549_MAGBIO Magnolia biondii HOM05D004410 ORTHO05D006134 2.7e-70 269.6 209 64.6
Haze_27417 Corylus avellana HOM05D004410 ORTHO05D006134 3.0e-69 266.2 295 51.2
CAN.G65.105 Capsicum annuum HOM05D004410 ORTHO05D006134 1.4e-66 257.3 166 72.9
BcaC03g14169 Brassica carinata HOM05D004410 ORTHO05D006134 9.1e-66 254.6 292 55.1
C02p14420 Brassica napus HOM05D004410 ORTHO05D006134 9.1e-66 254.6 292 55.1
BolC2t07566H Brassica oleracea HOM05D004410 ORTHO05D006134 9.1e-66 254.6 292 55.1
Nitab4.5_0000033g0380 Nicotiana tabacum HOM05D004410 ORTHO05D006134 2.1e-62 243.4 287 50.2
Cfa026974 Carpinus fangiana HOM05D004410 ORTHO05D006134 5.7e-52 208.8 270 48.1
TAR383G0389 Trochodendron aralioides HOM05D004410 ORTHO05D006134 1.0e-45 188.0 105 86.7
CANSAT78G0925 Cannabis sativa HOM05D004410 ORTHO05D006134 1.8e-45 187.2 108 84.3
Ca_20535_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 1.7e-40 170.6 154 61.0
CANSAT78G2262 Cannabis sativa HOM05D004410 ORTHO05D006134 2.3e-40 170.2 148 59.5
Peaxi162Scf03693g00003 Petunia axillaris HOM05D004410 ORTHO05D006134 2.3e-40 170.2 225 44.9
Ca_20536_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 5.0e-40 169.1 154 60.4
Ca_30867_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 5.0e-40 169.1 154 60.4
PSO210G2992 Papaver somniferum HOM05D004410 ORTHO05D006134 4.9e-35 152.5 85 87.1
MCO02G313 Micromonas commoda HOM05D004410 ORTHO05D006134 1.2e-33 147.9 188 43.1
C03p79720 Brassica napus HOM05D004410 ORTHO05D027626 2.3e-32 143.7 73 97.3
BolC5t31886H Brassica oleracea HOM05D004410 ORTHO05D027626 2.3e-32 143.7 73 97.3
BcaC05g27254 Brassica carinata HOM05D004410 ORTHO05D027626 8.6e-32 141.7 72 97.2
A02p08640 Brassica napus HOM05D004410 ORTHO05D097625 8.3e-27 125.2 185 45.9
Glyma.17G179900 Glycine max HOM05D004410 ORTHO05D027626 8.6e-24 115.2 68 83.8
Cfa002344 Carpinus fangiana HOM05D000705 ORTHO05D004052 1.1e-21 108.2 118 52.5
Ca_20516_v3 Cicer arietinum L. HOM05D004410 ORTHO05D147600 4.4e-20 102.8 128 45.3
TAR383G0746 Trochodendron aralioides HOM05D004410 ORTHO05D006134 5.8e-20 102.4 74 67.6
CDE02G0278 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 4.9e-19 99.4 106 49.1
Psat2g093080 Pisum sativum HOM05D000872 ORTHO05D000777 1.9e-18 97.4 60 73.3
Medtr4g007390 Medicago truncatula HOM05D004410 ORTHO05D006134 1.2e-14 84.7 59 67.8
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 1.2e-14 84.7 231 32.5
PSO724G1151 Papaver somniferum HOM05D004410 ORTHO05D305184 1.5e-12 77.8 86 53.5
GSVIVG01006242001 Vitis vinifera HOM05D004410 ORTHO05D006134 2.4e-10 70.5 58 62.1


User provided reference genes

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