Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p05230 Brassica napus HOM05D001965 ORTHO05D002112 2.2e-24 114.8 56 100.0
BcaB01g05526 Brassica carinata HOM05D002263 ORTHO05D003537 9.2e-23 109.4 54 98.1
C03p05250 Brassica napus HOM05D001965 ORTHO05D002112 2.0e-22 108.2 54 96.3
BcaB01g05530 Brassica carinata HOM05D002263 ORTHO05D003537 3.5e-22 107.5 54 96.3
BcaB01g03820 Brassica carinata HOM05D001965 ORTHO05D002112 1.7e-13 78.6 51 76.5
A06p37400 Brassica napus HOM05D001965 ORTHO05D002112 7.3e-12 73.2 55 69.1
CARHR186140 Cardamine hirsuta HOM05D001965 ORTHO05D002112 1.6e-11 72.0 53 69.8
BcaNung04542 Brassica carinata HOM05D001965 ORTHO05D002112 3.1e-10 67.8 55 65.5
Sp2g20770 Schrenkiella parvula HOM05D001965 ORTHO05D002112 3.1e-10 67.8 53 67.9
Aa31LG5G15990 Aethionema arabicum HOM05D001965 ORTHO05D002112 4.0e-10 67.4 53 66.0
Carub.0006s2498 Capsella rubella HOM05D001965 ORTHO05D002112 4.0e-10 67.4 51 70.6
BolC7t44625H Brassica oleracea HOM05D001965 ORTHO05D002112 5.2e-10 67.0 55 65.5
Thhalv10003596m.g Eutrema salsugineum HOM05D001965 ORTHO05D002112 6.8e-10 66.6 55 65.5
C07p40950 Brassica napus HOM05D001965 ORTHO05D002112 8.9e-10 66.2 55 65.5
Aa31LG11G9370 Aethionema arabicum HOM05D001965 ORTHO05D005740 1.2e-09 65.9 53 64.2
THA.LOC104818705 Tarenaya hassleriana HOM05D001965 ORTHO05D002112 1.2e-09 65.9 55 61.8
AT3G05380 Arabidopsis thaliana HOM05D001965 ORTHO05D002112 2.0e-09 65.1 53 66.0
AT5G27610 Arabidopsis thaliana HOM05D001965 ORTHO05D002112 2.0e-09 65.1 53 66.0
Carub.0003s0466 Capsella rubella HOM05D001965 ORTHO05D002112 2.0e-09 65.1 53 66.0
Sp3g04240 Schrenkiella parvula HOM05D001965 ORTHO05D002112 5.8e-09 63.5 53 64.2
THA.LOC104821714 Tarenaya hassleriana HOM05D001965 ORTHO05D002112 5.8e-09 63.5 55 60.0
CANSAT54G2574 Cannabis sativa HOM05D001965 ORTHO05D002112 7.5e-09 63.2 56 58.9
CARHR079720 Cardamine hirsuta HOM05D001965 ORTHO05D002112 1.7e-08 62.0 55 61.8
Thhalv10019971m.g Eutrema salsugineum HOM05D001965 ORTHO05D002112 2.2e-08 61.6 53 62.3
Lj1g0025505 Lotus japonicus HOM05D001965 ORTHO05D002112 2.9e-08 61.2 53 58.5
TAR633G0752 Trochodendron aralioides HOM05D001965 ORTHO05D002112 2.9e-08 61.2 53 58.5
Prupe.6G323800 Prunus persica HOM05D001965 ORTHO05D002112 3.7e-08 60.8 53 60.4
BcaC05g30151 Brassica carinata HOM05D001965 ORTHO05D002112 4.9e-08 60.5 53 62.3
TPR.G6092 Trifolium pratense HOM05D001965 ORTHO05D002112 4.9e-08 60.5 50 64.0
Psat0s2745g0040 Pisum sativum HOM05D001965 ORTHO05D002112 6.4e-08 60.1 50 62.0
A05p42260 Brassica napus HOM05D001965 ORTHO05D002112 8.3e-08 59.7 53 60.4
BraA05t23027Z Brassica rapa HOM05D001965 ORTHO05D002112 8.3e-08 59.7 53 60.4
Ca_10116_v3 Cicer arietinum L. HOM05D001965 ORTHO05D002112 8.3e-08 59.7 50 62.0
CiPaw.01G150700 Carya illinoinensis HOM05D001965 ORTHO05D002112 1.1e-07 59.3 53 56.6
Medtr1g083040 Medicago truncatula HOM05D001965 ORTHO05D002112 1.1e-07 59.3 50 62.0
MBI13_g04191_MAGBIO Magnolia biondii HOM05D001965 ORTHO05D002112 1.4e-07 58.9 53 58.5
Sed0023895 Sechium edule HOM05D001965 ORTHO05D002112 1.4e-07 58.9 53 58.5
VMungo0720G2192 Vigna mungo HOM05D001965 ORTHO05D002112 1.9e-07 58.5 50 62.0
Dinv30775 Davidia involucrata HOM05D001965 ORTHO05D002112 2.4e-07 58.2 53 58.5
FAN09G1699 Fragaria x ananassa HOM05D001965 ORTHO05D002112 2.4e-07 58.2 53 58.5
Lalb_Chr15g0077241 Lupinus albus HOM05D001965 ORTHO05D002112 2.4e-07 58.2 50 60.0
Phvul.007G179500 Phaseolus vulgaris HOM05D001965 ORTHO05D002112 2.4e-07 58.2 50 62.0
Atru.chr2.365 Acer truncatum HOM05D001965 ORTHO05D002112 3.2e-07 57.8 51 60.8
Aqoxy2G03054 Aquilegia oxysepala HOM05D001965 ORTHO05D002112 3.2e-07 57.8 53 56.6
Ciclev10000065m.g Citrus clementina HOM05D001965 ORTHO05D002112 3.2e-07 57.8 53 58.5
Glyma.10G153800 Glycine max HOM05D001965 ORTHO05D002112 3.2e-07 57.8 50 62.0
Nn3g21366 Nelumbo nucifera HOM05D001965 ORTHO05D002112 3.2e-07 57.8 53 56.6
Sed0011069 Sechium edule HOM05D001965 ORTHO05D002112 4.1e-07 57.4 53 56.6
BNapus_Darmor_BZH_scaffold_114p00150 Brassica napus HOM05D001965 ORTHO05D002112 5.4e-07 57.0 49 63.3
BraSC132t45508Z Brassica rapa HOM05D001965 ORTHO05D002112 5.4e-07 57.0 49 63.3
arahy.Tifrunner.gnm1.ann1.01A8MA Arachis hypogaea HOM05D001965 ORTHO05D002112 7.0e-07 56.6 50 60.0
arahy.Tifrunner.gnm1.ann1.FE8GQY Arachis hypogaea HOM05D001965 ORTHO05D002112 7.0e-07 56.6 50 60.0
ClCG05G005970 Citrullus lanatus HOM05D001965 ORTHO05D002112 7.0e-07 56.6 53 56.6
MELO3C006642.2 Cucumis melo HOM05D001965 ORTHO05D002112 7.0e-07 56.6 53 56.6
CsaV3_3G014420 Cucumis sativus L. HOM05D001965 ORTHO05D002112 7.0e-07 56.6 53 56.6
FvH4_6g06170 Fragaria vesca HOM05D001965 ORTHO05D002112 7.0e-07 56.6 53 58.5
FAN02G4081 Fragaria x ananassa HOM05D001965 ORTHO05D002112 7.0e-07 56.6 53 58.5
FAN05G4497 Fragaria x ananassa HOM05D001965 ORTHO05D002112 7.0e-07 56.6 53 58.5
FAN14G1216 Fragaria x ananassa HOM05D001965 ORTHO05D002112 7.0e-07 56.6 53 58.5
Glyma.20G234500 Glycine max HOM05D001965 ORTHO05D002112 7.0e-07 56.6 50 60.0
MBI19_g04331_MAGBIO Magnolia biondii HOM05D001965 ORTHO05D002112 7.0e-07 56.6 51 56.9
MD12G1217500 Malus domestica HOM05D001965 ORTHO05D002112 7.0e-07 56.6 53 56.6
RcHm_v2.0_Chr3g0455181 Rosa chinensis HOM05D001965 ORTHO05D002112 7.0e-07 56.6 53 58.5
Hund20572 Selenicereus undatus HOM05D001965 ORTHO05D002112 7.0e-07 56.6 53 54.7
HPP92_003630 Vanilla planifolia HOM05D001965 ORTHO05D002112 7.0e-07 56.6 56 53.6
A03p04580 Brassica napus HOM05D001965 ORTHO05D002112 9.2e-07 56.2 34 82.4
MD04G1203700 Malus domestica HOM05D001965 ORTHO05D002112 9.2e-07 56.2 53 56.6
BcaC05g30132 Brassica carinata HOM05D001965 ORTHO05D002112 1.2e-06 55.8 53 58.5
C05p61840 Brassica napus HOM05D001965 ORTHO05D002112 1.2e-06 55.8 53 58.5
BolC5t34844H Brassica oleracea HOM05D001965 ORTHO05D002112 1.2e-06 55.8 53 58.5
CSS0013812 Camellia sinensis var. sinensis HOM05D001965 ORTHO05D002112 1.2e-06 55.8 53 56.6
Cpa.g.sc48.70 Carica papaya HOM05D001965 ORTHO05D002112 1.2e-06 55.8 51 58.8
Nn4g25956 Nelumbo nucifera HOM05D001965 ORTHO05D002112 1.6e-06 55.5 53 54.7
GSVIVG01017770001 Vitis vinifera HOM05D001965 ORTHO05D002112 1.6e-06 55.5 56 53.6
EL10Ac3g06584 Beta vulgaris HOM05D001965 ORTHO05D002112 2.1e-06 55.1 53 54.7
AUR62040383 Chenopodium quinoa HOM05D001965 ORTHO05D002112 2.1e-06 55.1 53 54.7
AUR62043447 Chenopodium quinoa HOM05D001965 ORTHO05D002112 2.1e-06 55.1 53 54.7
Dinv40302 Davidia involucrata HOM05D001965 ORTHO05D002112 2.1e-06 55.1 53 54.7
Dinv44401 Davidia involucrata HOM05D001965 ORTHO05D002112 2.1e-06 55.1 54 59.3
Potri.013G020500 Populus trichocarpa HOM05D001965 ORTHO05D002112 2.1e-06 55.1 53 54.7
Sc15g0003700 Simmondsia chinensis HOM05D001965 ORTHO05D002112 2.1e-06 55.1 53 54.7
TWI56G1184 Tripterygium wilfordii HOM05D001965 ORTHO05D002112 2.1e-06 55.1 51 56.9
BcaC09g47821 Brassica carinata HOM05D001965 ORTHO05D002112 2.7e-06 54.7 49 61.2
BolC1t05698H Brassica oleracea HOM05D001965 ORTHO05D002112 2.7e-06 54.7 49 61.2
CDE04G2314 Ceratophyllum demersum HOM05D001965 ORTHO05D002112 2.7e-06 54.7 53 54.7
CDE07G1274 Ceratophyllum demersum HOM05D001965 ORTHO05D002112 2.7e-06 54.7 53 54.7
PGR031G3250 Punica granatum HOM05D001965 ORTHO05D002112 2.7e-06 54.7 53 56.6
Lju1819A2T53 Lonicera japonica HOM05D001965 ORTHO05D002112 3.5e-06 54.3 53 56.6
PSO170G4751 Papaver somniferum HOM05D001965 ORTHO05D002112 3.5e-06 54.3 53 56.6
PSO210G6282 Papaver somniferum HOM05D001965 ORTHO05D002112 3.5e-06 54.3 53 56.6
HPP92_003646 Vanilla planifolia HOM05D001965 ORTHO05D002112 3.5e-06 54.3 49 57.1
BolC2t11886H Brassica oleracea HOM05D001965 ORTHO05D005740 4.6e-06 53.9 54 59.3
BraA06t26664Z Brassica rapa HOM05D001965 ORTHO05D002112 4.6e-06 53.9 55 54.5
PSO063G4118 Papaver somniferum HOM05D001965 ORTHO05D002112 4.6e-06 53.9 53 54.7
Actinidia05684 Actinidia chinensis HOM05D001965 ORTHO05D002112 6.0e-06 53.5 53 54.7
Sed0008965 Sechium edule HOM05D001965 ORTHO05D002112 6.0e-06 53.5 50 56.0
vmacro08123 Vaccinium macrocarpon HOM05D001965 ORTHO05D002112 6.0e-06 53.5 53 52.8
CSS0007405 Camellia sinensis var. sinensis HOM05D001965 ORTHO05D002112 7.8e-06 53.1 53 54.7
CSS0031262 Camellia sinensis var. sinensis HOM05D001965 ORTHO05D002112 7.8e-06 53.1 53 54.7
ClCG02G015590 Citrullus lanatus HOM05D001965 ORTHO05D002112 7.8e-06 53.1 50 56.0
Gohir.A02G047900 Gossypium hirsutum HOM05D001965 ORTHO05D002112 7.8e-06 53.1 53 52.8
PGR004G1216 Punica granatum HOM05D001965 ORTHO05D002112 7.8e-06 53.1 53 52.8


User provided reference genes

Program Settings