Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p04350 Brassica napus HOM05D003684 ORTHO05D004428 0.0e+00 1566.2 885 100.0
BolC3t12968H Brassica oleracea HOM05D003684 ORTHO05D004428 0.0e+00 1526.9 887 98.4
A03p03860 Brassica napus HOM05D003684 ORTHO05D004428 0.0e+00 1499.2 891 95.5
BraA03t09733Z Brassica rapa HOM05D003684 ORTHO05D004428 0.0e+00 1486.9 898 94.3
BcaB01g05594 Brassica carinata HOM05D003684 ORTHO05D004428 0.0e+00 1234.2 913 82.4
Thhalv10012626m.g Eutrema salsugineum HOM05D003684 ORTHO05D004428 0.0e+00 1165.6 931 75.2
Sp6g34450 Schrenkiella parvula HOM05D003684 ORTHO05D004428 0.0e+00 1150.2 935 74.5
Carub.0006s0737 Capsella rubella HOM05D003684 ORTHO05D004428 0.0e+00 1117.4 934 74.5
AL6G18920 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 0.0e+00 1114.4 940 75.3
CARHR204550 Cardamine hirsuta HOM05D003684 ORTHO05D004428 0.0e+00 1102.4 942 71.5
AT5G08450 Arabidopsis thaliana HOM05D003684 ORTHO05D004428 0.0e+00 1079.3 950 72.1
Aa31LG3G18080 Aethionema arabicum HOM05D003684 ORTHO05D004428 9.5e-308 1060.1 928 69.0
THA.LOC104800528 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 5.8e-281 971.1 911 64.7
AL6G19100 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 1.1e-263 913.7 1100 60.4
THA.LOC104818396 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 8.8e-253 877.5 875 60.8
Duzib213G0690 Durio zibethinus HOM05D003684 ORTHO05D004428 2.3e-245 852.8 914 56.9
COL.COLO4_36995 Corchorus olitorius HOM05D003684 ORTHO05D004428 7.4e-244 847.8 916 56.9
Gorai.002G106900 Gossypium raimondii HOM05D003684 ORTHO05D004428 3.1e-242 842.4 911 56.2
Thecc.07G170900 Theobroma cacao HOM05D003684 ORTHO05D004428 2.6e-241 839.3 913 56.2
Duzib187G1616 Durio zibethinus HOM05D003684 ORTHO05D004428 3.6e-238 828.9 911 56.0
Cfa020930 Carpinus fangiana HOM05D003684 ORTHO05D004428 2.2e-235 819.7 927 53.5
Manes.13G154400 Manihot esculenta HOM05D003684 ORTHO05D004428 1.4e-234 817.0 922 55.3
Atru.chr3.1442 Acer truncatum HOM05D003684 ORTHO05D004428 9.1e-234 814.3 900 54.8
Ciclev10024915m.g Citrus clementina HOM05D003684 ORTHO05D004428 2.5e-231 806.2 904 55.1
Gohir.D01G081800 Gossypium hirsutum HOM05D003684 ORTHO05D004428 1.0e-229 800.8 791 59.0
Potri.018G145560 Populus trichocarpa HOM05D003684 ORTHO05D004428 3.0e-229 799.3 911 53.6
Potri.004G135800 Populus trichocarpa HOM05D003684 ORTHO05D004428 4.0e-229 798.9 907 53.9
Potri.T044700 Populus trichocarpa HOM05D003684 ORTHO05D004428 2.8e-227 792.7 915 53.2
Sed0026164 Sechium edule HOM05D003684 ORTHO05D004428 4.1e-226 788.9 906 52.0
CsaV3_2G019660 Cucumis sativus L. HOM05D003684 ORTHO05D004428 1.0e-224 784.3 913 52.8
CiPaw.16G119400 Carya illinoinensis HOM05D003684 ORTHO05D004428 1.7e-224 783.5 926 51.7
Sabra04G0082300 Salix brachista HOM05D003684 ORTHO05D004428 1.7e-224 783.5 916 52.8
TWI31G1361 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 1.7e-224 783.5 903 52.9
Gohir.A01G097200 Gossypium hirsutum HOM05D003684 ORTHO05D004428 3.8e-224 782.3 916 53.9
RcHm_v2.0_Chr3g0485021 Rosa chinensis HOM05D003684 ORTHO05D004428 1.1e-223 780.8 910 52.1
PGR119G1631 Punica granatum HOM05D003684 ORTHO05D004428 1.2e-222 777.3 911 52.9
FvH4_1g25880 Fragaria vesca HOM05D003684 ORTHO05D004428 7.5e-220 768.1 908 51.4
FAN28G1615 Fragaria x ananassa HOM05D003684 ORTHO05D004428 1.2e-217 760.8 908 51.4
Lj5g0014818 Lotus japonicus HOM05D003684 ORTHO05D004428 3.3e-215 752.7 915 50.4
Glyma.10G175900 Glycine max HOM05D003684 ORTHO05D004428 3.6e-214 749.2 922 51.1
Glyma.09G157300 Glycine max HOM05D003684 ORTHO05D004428 2.0e-212 743.4 919 51.7
Phvul.004G132300 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 2.0e-212 743.4 925 50.9
VMungo0720G1706 Vigna mungo HOM05D003684 ORTHO05D004428 3.4e-212 742.7 913 49.8
TAR381G1133 Trochodendron aralioides HOM05D003684 ORTHO05D004428 4.4e-212 742.3 909 50.3
FAN26G1029 Fragaria x ananassa HOM05D003684 ORTHO05D004428 7.5e-212 741.5 898 50.7
FAN19G3168 Fragaria x ananassa HOM05D003684 ORTHO05D004428 9.8e-212 741.1 900 50.8
Psat6g111880 Pisum sativum HOM05D003684 ORTHO05D004428 1.7e-211 740.3 931 49.8
Glyma.20G214600 Glycine max HOM05D003684 ORTHO05D004428 2.4e-210 736.5 922 51.5
Phvul.007G114500 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 7.8e-209 731.5 933 48.7
Glyma.16G207900 Glycine max HOM05D003684 ORTHO05D004428 8.6e-208 728.0 914 50.1
MD15G1140800 Malus domestica HOM05D003684 ORTHO05D004428 8.6e-208 728.0 942 49.4
EL10Ac4g09714 Beta vulgaris HOM05D003684 ORTHO05D004428 1.1e-207 727.6 915 50.9
arahy.Tifrunner.gnm1.ann1.554WMS Arachis hypogaea HOM05D003684 ORTHO05D004428 2.3e-205 719.9 917 50.5
Ah.06g188290 Amaranthus hybridus HOM05D003684 ORTHO05D004428 5.2e-205 718.8 819 52.9
Lalb_Chr06g0168741 Lupinus albus HOM05D003684 ORTHO05D004428 9.8e-204 714.5 912 49.1
FAN23G1204 Fragaria x ananassa HOM05D003684 ORTHO05D004428 1.7e-203 713.8 908 49.3
arahy.Tifrunner.gnm1.ann1.88FPG1 Arachis hypogaea HOM05D003684 ORTHO05D004428 1.9e-202 710.3 917 49.7
TWI79G1581 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 1.9e-202 710.3 907 49.9
Ca_09907_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 1.6e-201 707.2 948 47.7
Dinv26831 Davidia involucrata HOM05D003684 ORTHO05D004428 1.7e-200 703.7 877 51.4
Medtr1g077090 Medicago truncatula HOM05D003684 ORTHO05D004428 6.2e-198 695.3 934 47.9
Aqoxy5G02639 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 2.3e-197 693.3 900 50.1
CAN.G1156.25 Capsicum annuum HOM05D003684 ORTHO05D004428 3.1e-197 693.0 839 49.3
VMungo0464G0733 Vigna mungo HOM05D003684 ORTHO05D004428 3.1e-197 693.0 913 49.9
Solyc05g056340.3 Solanum lycopersicum HOM05D003684 ORTHO05D004428 1.5e-196 690.6 804 50.9
Lalb_Chr02g0149761 Lupinus albus HOM05D003684 ORTHO05D004428 2.6e-196 689.9 915 48.2
Sopen05g034730 Solanum pennellii HOM05D003684 ORTHO05D004428 4.4e-196 689.1 804 50.7
Oeu063702.1 Olea europaea HOM05D003684 ORTHO05D004428 1.1e-194 684.5 918 48.1
Actinidia19941 Actinidia chinensis HOM05D003684 ORTHO05D004428 1.6e-193 680.6 804 52.9
Hund21769 Selenicereus undatus HOM05D003684 ORTHO05D004428 6.0e-193 678.7 836 52.4
Lalb_Chr21g0311771 Lupinus albus HOM05D003684 ORTHO05D004428 1.3e-192 677.6 913 48.7
Prupe.4G280600 Prunus persica HOM05D003684 ORTHO05D004428 1.2e-190 671.0 804 51.7
AUR62000586 Chenopodium quinoa HOM05D003684 ORTHO05D004428 1.6e-190 670.6 908 48.8
BcaB08g37259 Brassica carinata HOM05D003684 ORTHO05D004428 5.2e-189 665.6 451 76.3
arahy.Tifrunner.gnm1.ann1.XFQ1DZ Arachis hypogaea HOM05D003684 ORTHO05D004428 4.4e-188 662.5 928 47.7
Rhsim10G0125000 Rhododendron simsii HOM05D003684 ORTHO05D004428 1.4e-186 657.5 954 45.0
CANSAT54G1806 Cannabis sativa HOM05D003684 ORTHO05D004428 1.9e-186 657.1 703 58.0
Migut.M00001 Erythranthe guttata HOM05D003684 ORTHO05D004428 9.3e-186 654.8 665 56.8
SGA_v2.0_scaffold12G06270 Striga asiatica HOM05D003684 ORTHO05D004428 3.5e-185 652.9 687 54.4
Ca_25251_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 6.0e-185 652.1 858 49.0
CiPaw.15G185900 Carya illinoinensis HOM05D003684 ORTHO05D004428 6.9e-181 638.6 566 61.5
unitig_736.g22645 Utricularia gibba HOM05D003684 ORTHO05D004428 7.6e-180 635.2 602 57.5
Lj2g0008338 Lotus japonicus HOM05D003684 ORTHO05D004428 1.3e-179 634.4 910 45.7
TPR.G16631 Trifolium pratense HOM05D003684 ORTHO05D004428 1.1e-178 631.3 569 61.0
BraA10t44878Z Brassica rapa HOM05D003684 ORTHO05D004428 1.9e-178 630.6 361 87.0
Medtr6g065070 Medicago truncatula HOM05D003684 ORTHO05D004428 1.2e-177 627.9 826 48.3
HanXRQChr11g0336971 Helianthus annuus HOM05D003684 ORTHO05D004428 1.7e-176 624.0 811 49.7
TPR.G40356 Trifolium pratense HOM05D003684 ORTHO05D004428 1.7e-176 624.0 836 51.0
GSVIVG01000253001 Vitis vinifera HOM05D003684 ORTHO05D004428 1.7e-176 624.0 496 68.1
C09p68560 Brassica napus HOM05D003684 ORTHO05D004428 3.0e-176 623.2 398 79.6
Peaxi162Scf00819g00027 Petunia axillaris HOM05D003684 ORTHO05D004428 3.9e-176 622.9 843 48.3
HPP92_003712 Vanilla planifolia HOM05D003684 ORTHO05D004428 7.3e-175 618.6 908 44.5
Os07g0477500 Oryza sativa ssp. japonica HOM05D003684 ORTHO05D004428 4.8e-174 615.9 901 46.2
MSTRG.23231 Avicennia marina HOM05D003684 ORTHO05D004428 1.8e-173 614.0 683 52.6
Lsat_1_v5_gn_1_130380 Lactuca sativa HOM05D003684 ORTHO05D004428 2.6e-172 610.1 683 53.9
DCAR_009623 Daucus carota HOM05D003684 ORTHO05D004428 7.6e-172 608.6 432 71.1
AUR62006943 Chenopodium quinoa HOM05D003684 ORTHO05D004428 1.7e-171 607.4 813 48.7
ECA248G2431 Erigeron canadensis HOM05D003684 ORTHO05D004428 7.1e-170 602.1 902 44.9
ClCG02G000160 Citrullus lanatus HOM05D003684 ORTHO05D004428 1.2e-169 601.3 905 45.9
Cpa.g.sc138.52 Carica papaya HOM05D003684 ORTHO05D004428 3.5e-169 599.7 366 80.3
A10p28300 Brassica napus HOM05D003684 ORTHO05D004428 9.6e-167 591.7 378 79.6
Zm00001eb178520 Zea mays HOM05D003684 ORTHO05D004428 1.1e-165 588.2 681 52.6
unitig_899.g14642 Utricularia gibba HOM05D003684 ORTHO05D004428 2.0e-164 583.9 598 54.8
BolC9t59599H Brassica oleracea HOM05D003684 ORTHO05D004428 1.9e-162 577.4 881 46.0
Nitab4.5_0000496g0270 Nicotiana tabacum HOM05D003684 ORTHO05D004428 1.9e-162 577.4 795 46.5
Peaxi162Scf00353g00740 Petunia axillaris HOM05D003684 ORTHO05D004428 9.3e-162 575.1 781 47.2
Psat0s3859g0040 Pisum sativum HOM05D003684 ORTHO05D004428 9.3e-162 575.1 627 55.3
Sabra19G0000700 Salix brachista HOM05D003684 ORTHO05D004428 4.6e-161 572.8 366 77.0
PSO170G2972 Papaver somniferum HOM05D003684 ORTHO05D004428 7.9e-161 572.0 932 44.3
PSO782G3749 Papaver somniferum HOM05D003684 ORTHO05D004428 2.5e-159 567.0 932 44.2
CDE08G0027 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 4.3e-159 566.2 822 44.5
Sabra19G0012100 Salix brachista HOM05D003684 ORTHO05D004428 6.2e-158 562.4 366 75.4
vmacro12735 Vaccinium macrocarpon HOM05D003684 ORTHO05D004428 3.1e-157 560.1 887 44.2
Sc09g0001960 Simmondsia chinensis HOM05D003684 ORTHO05D004428 2.9e-155 553.5 352 77.3
Zm00001eb108610 Zea mays HOM05D003684 ORTHO05D004428 1.4e-154 551.2 682 50.6
Nitab4.5_0006957g0020 Nicotiana tabacum HOM05D003684 ORTHO05D004428 2.6e-148 530.4 669 48.9
SalBow8G3946 Salvia bowleyana HOM05D003684 ORTHO05D004428 8.2e-142 508.8 413 63.9
ATR1136G078 Amborella trichopoda HOM05D003684 ORTHO05D004428 2.1e-137 494.2 359 67.4
Cc07_g19760 Coffea canephora HOM05D003684 ORTHO05D004428 7.9e-137 492.3 351 69.5
Actinidia36575 Actinidia chinensis HOM05D003684 ORTHO05D004428 1.1e-133 481.9 428 61.2
DCAR_019948 Daucus carota HOM05D003684 ORTHO05D004428 7.2e-130 469.2 427 56.7
Potri.T044400 Populus trichocarpa HOM05D003684 ORTHO05D004428 2.8e-126 457.2 634 47.5
Oeu034404.1 Olea europaea HOM05D003684 ORTHO05D004428 1.6e-124 451.4 307 73.9
Sc06g0005260 Simmondsia chinensis HOM05D003684 ORTHO05D004428 2.7e-124 450.7 549 47.5
SHI11408 Sapria himalayana HOM05D003684 ORTHO05D004428 2.5e-122 444.1 798 42.9
Lj2C616G3 Lonicera japonica HOM05D003684 ORTHO05D004428 8.0e-121 439.1 319 69.3
Pp3c3_32800 Physcomitrium patens HOM05D003684 ORTHO05D004428 2.8e-118 430.6 438 52.5
Pp3c8_5360 Physcomitrium patens HOM05D003684 ORTHO05D004428 4.1e-117 426.8 454 52.4
SMO356G0426 Selaginella moellendorffii HOM05D003684 ORTHO05D004428 1.6e-116 424.9 444 54.3
HPP92_007640 Vanilla planifolia HOM05D003684 ORTHO05D004428 8.8e-112 409.1 596 41.1
Pp3c3_30960 Physcomitrium patens HOM05D003684 ORTHO05D004428 3.4e-111 407.1 444 50.2
MBI03_g18673_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 2.8e-110 404.1 284 71.1
Mapoly0050s0019 Marchantia polymorpha HOM05D003684 ORTHO05D004428 3.3e-106 390.6 435 49.7
HPP92_003711 Vanilla planifolia HOM05D003684 ORTHO05D004428 1.7e-102 378.3 734 38.4
AagrBONN_evm.TU.Sc2ySwM_228.5259 Anthoceros agrestis HOM05D003684 ORTHO05D004428 1.4e-101 375.2 420 49.0
Nn1g08436 Nelumbo nucifera HOM05D003684 ORTHO05D004428 1.0e-99 369.0 743 40.0
MSTRG.2470 Avicennia marina HOM05D003684 ORTHO05D004428 1.4e-96 358.6 466 49.4
Potri.018G145546 Populus trichocarpa HOM05D003684 ORTHO05D004428 6.8e-96 356.3 249 72.3
SGA_v2.0_scaffold51G18855 Striga asiatica HOM05D003684 ORTHO05D004428 1.9e-85 321.6 327 52.0
Ciclev10026566m.g Citrus clementina HOM05D003684 ORTHO05D004428 7.3e-82 309.7 198 78.8
CBR_g645 Chara braunii HOM05D003684 ORTHO05D004428 3.3e-74 284.3 317 46.7
MSTRG.2469 Avicennia marina HOM05D003684 ORTHO05D004428 3.2e-69 267.7 205 65.4
CDE02G3840 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 1.9e-66 258.5 187 67.9
CSS0049380 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 4.8e-65 253.8 281 51.2
MCO05G109 Micromonas commoda HOM05D003684 ORTHO05D004428 5.4e-61 240.4 387 37.5
CDE02G3206 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 1.6e-60 238.8 599 34.2
Cre03.g182600 Chlamydomonas reinhardtii HOM05D003684 ORTHO05D004428 4.6e-60 237.3 357 37.8
Cpa.g.sc138.51 Carica papaya HOM05D003684 ORTHO05D004428 3.6e-57 227.6 397 44.3
Cc07_g19750 Coffea canephora HOM05D003684 ORTHO05D004428 1.8e-56 225.3 185 63.2
Haze_19362 Corylus avellana HOM05D003684 ORTHO05D004428 1.5e-55 222.2 548 36.3
HanXRQChr01g0009441 Helianthus annuus HOM05D003684 ORTHO05D004428 2.0e-55 221.9 200 60.5
MBI01_g42406_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 9.3e-53 213.0 158 66.5
MELO3C023205.2 Cucumis melo HOM05D003684 ORTHO05D004428 3.5e-52 211.1 534 37.5
Mapoly0024s0027 Marchantia polymorpha HOM05D003684 ORTHO05D004428 3.1e-48 198.0 371 38.0
Lj2C616T2 Lonicera japonica HOM05D003684 ORTHO05D004428 1.1e-45 189.5 633 34.1
PRCOL_00004531 Prasinoderma coloniale HOM05D003684 ORTHO05D028742 9.3e-45 186.4 327 36.4
CSS0015943 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 1.6e-44 185.7 528 37.7
Sabra19G0011700 Salix brachista HOM05D003684 ORTHO05D004428 1.1e-42 179.5 538 34.4
Aqoxy391s001 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 6.9e-40 170.2 101 82.2
Potri.018G145542 Populus trichocarpa HOM05D003684 ORTHO05D004428 9.0e-40 169.9 336 40.2
Oeu034403.1 Olea europaea HOM05D003684 ORTHO05D004428 3.4e-39 167.9 441 35.6
PGSC0003DMG400023330 Solanum tuberosum HOM05D003684 ORTHO05D004428 4.5e-39 167.5 425 33.4
Cc07_g19740 Coffea canephora HOM05D003684 ORTHO05D004428 7.6e-39 166.8 158 56.3
Sc09g0001970 Simmondsia chinensis HOM05D003684 ORTHO05D004428 5.5e-37 160.6 570 36.7
Cc00_g24540 Coffea canephora HOM05D003684 ORTHO05D004428 7.4e-34 150.2 85 82.4
ATR1136G068 Amborella trichopoda HOM05D003684 ORTHO05D004428 2.2e-25 122.1 520 30.8
HanXRQChr17g0567611 Helianthus annuus HOM05D003684 ORTHO05D004428 1.5e-23 115.9 63 87.3
Ciclev10003222m.g Citrus clementina HOM05D003684 ORTHO05D004428 2.2e-22 112.1 128 53.9
Lsat_1_v5_gn_6_89680 Lactuca sativa HOM05D003684 ORTHO05D004428 6.5e-22 110.5 226 36.7
DCAR_009622 Daucus carota HOM05D003684 ORTHO05D004428 7.2e-21 107.1 446 29.8
CSS0003103 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 3.6e-20 104.8 66 74.2
Sabra01G0044800 Salix brachista HOM05D003684 ORTHO05D004428 4.7e-20 104.4 64 78.1
SEGI_34739 Sequoiadendron giganteum HOM05D003684 ORTHO05D004428 6.7e-19 100.5 65 75.4
CSS0033146 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 3.3e-18 98.2 65 69.2
BcaB08g37258 Brassica carinata HOM05D003684 ORTHO05D091863 2.7e-12 78.6 53 69.8
EL10Ac2g03383 Beta vulgaris HOM05D000039 ORTHO05D001729 2.3e-11 75.5 59 64.4
Potri.018G145552 Populus trichocarpa HOM05D003684 ORTHO05D004428 4.0e-11 74.7 39 92.3
arahy.Tifrunner.gnm1.ann1.32AA53 Arachis hypogaea HOM05D003684 ORTHO05D001254 1.7e-09 69.3 52 65.4
Ciclev10003442m.g Citrus clementina HOM05D003684 ORTHO05D004428 8.2e-09 67.0 47 70.2
Ciclev10003579m.g Citrus clementina HOM05D003684 ORTHO05D004428 7.0e-08 63.9 41 80.5
Cfa001622 Carpinus fangiana HOM05D003684 ORTHO05D125656 1.3e-06 59.7 161 25.5
EL10Ac9g22716 Beta vulgaris HOM05D003684 ORTHO05D004428 2.9e-06 58.5 32 78.1
HanXRQChr11g0344511 Helianthus annuus HOM05D003684 ORTHO05D004428 2.9e-06 58.5 33 72.7
TPR.G16635 Trifolium pratense HOM05D003684 ORTHO05D004428 6.5e-06 57.4 279 35.1


User provided reference genes

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