Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g18219 Brassica carinata HOM05D004582 ORTHO05D005507 8.2e-66 253.4 117 100.0
A02p42940 Brassica napus HOM05D004582 ORTHO05D005507 8.2e-66 253.4 117 100.0
C02p62880 Brassica napus HOM05D004582 ORTHO05D005507 8.2e-66 253.4 117 100.0
BraA02t09217Z Brassica rapa HOM05D004582 ORTHO05D005507 8.2e-66 253.4 117 100.0
BcaB07g29700 Brassica carinata HOM05D004582 ORTHO05D005507 1.1e-65 253.1 117 99.1
Sp2g26760 Schrenkiella parvula HOM05D004582 ORTHO05D005507 9.1e-65 250.0 117 98.3
Thhalv10005155m.g Eutrema salsugineum HOM05D004582 ORTHO05D005507 2.0e-64 248.8 117 97.4
Aa31LG10G11080 Aethionema arabicum HOM05D004582 ORTHO05D005507 1.3e-63 246.1 117 95.7
Aa31LG1G18160 Aethionema arabicum HOM05D004582 ORTHO05D005507 1.3e-63 246.1 117 95.7
AL8G40820 Arabidopsis lyrata HOM05D004582 ORTHO05D005507 1.3e-63 246.1 117 97.4
AT5G63670 Arabidopsis thaliana HOM05D004582 ORTHO05D005507 1.3e-63 246.1 117 97.4
Carub.0008s2444 Capsella rubella HOM05D004582 ORTHO05D005507 2.9e-63 245.0 117 95.7
CARHR278210 Cardamine hirsuta HOM05D004582 ORTHO05D005507 1.1e-62 243.0 117 95.7
Aa31LG3G17960 Aethionema arabicum HOM05D004582 ORTHO05D005507 6.7e-60 233.8 117 90.6
Carub.0006s0753 Capsella rubella HOM05D004582 ORTHO05D005507 2.0e-59 232.3 117 88.9
THA.LOC104819361 Tarenaya hassleriana HOM05D004582 ORTHO05D005507 4.4e-59 231.1 117 88.9
AT5G08565 Arabidopsis thaliana HOM05D004582 ORTHO05D005507 1.3e-58 229.6 117 88.0
CANSAT78G1495 Cannabis sativa HOM05D004582 ORTHO05D005507 2.8e-58 228.4 117 85.5
AL6G19290 Arabidopsis lyrata HOM05D004582 ORTHO05D005507 3.7e-58 228.0 117 87.2
Cfa005243 Carpinus fangiana HOM05D004582 ORTHO05D005507 4.8e-58 227.6 117 86.3
Manes.01G004880 Manihot esculenta HOM05D004582 ORTHO05D005507 4.8e-58 227.6 117 84.6
Ciclev10017231m.g Citrus clementina HOM05D004582 ORTHO05D005507 1.4e-57 226.1 115 85.2
THA.LOC104800345 Tarenaya hassleriana HOM05D004582 ORTHO05D005507 1.8e-57 225.7 117 86.3
MELO3C023752.2 Cucumis melo HOM05D004582 ORTHO05D005507 2.4e-57 225.3 117 84.6
CsaV3_3G020290 Cucumis sativus L. HOM05D004582 ORTHO05D005507 2.4e-57 225.3 117 84.6
Sp6g34300 Schrenkiella parvula HOM05D004582 ORTHO05D005507 2.4e-57 225.3 117 87.2
Sed0027851 Sechium edule HOM05D004582 ORTHO05D005507 5.3e-57 224.2 117 84.6
Sed0002882 Sechium edule HOM05D004582 ORTHO05D005507 9.1e-57 223.4 117 83.8
VMungo0251G1823 Vigna mungo HOM05D000329 ORTHO05D002813 9.1e-57 223.4 117 87.2
Gohir.A04G109900 Gossypium hirsutum HOM05D004582 ORTHO05D005507 2.6e-56 221.9 117 83.8
Gohir.D04G150100 Gossypium hirsutum HOM05D004582 ORTHO05D005507 2.6e-56 221.9 117 83.8
Gorai.012G136700 Gossypium raimondii HOM05D004582 ORTHO05D005507 2.6e-56 221.9 117 83.8
Phvul.003G004200 Phaseolus vulgaris HOM05D004582 ORTHO05D005507 4.5e-56 221.1 117 85.5
Duzib248G0155 Durio zibethinus HOM05D004582 ORTHO05D005507 5.9e-56 220.7 117 82.9
Glyma.17G000400 Glycine max HOM05D004582 ORTHO05D005507 5.9e-56 220.7 117 83.8
BcaB01g05655 Brassica carinata HOM05D004582 ORTHO05D005507 7.7e-56 220.3 117 84.6
A03p03980 Brassica napus HOM05D004582 ORTHO05D005507 7.7e-56 220.3 117 84.6
C03p04450 Brassica napus HOM05D004582 ORTHO05D005507 7.7e-56 220.3 117 84.6
Eucgr.G02614 Eucalyptus grandis HOM05D004582 ORTHO05D005507 7.7e-56 220.3 119 85.7
Thecc.02G151700 Theobroma cacao HOM05D004582 ORTHO05D005507 7.7e-56 220.3 117 82.9
Lj6g0014483 Lotus japonicus HOM05D004582 ORTHO05D005507 1.0e-55 219.9 115 87.0
Potri.010G255000 Populus trichocarpa HOM05D004582 ORTHO05D005507 1.0e-55 219.9 117 82.1
BcaB01g05582 Brassica carinata HOM05D004582 ORTHO05D005507 1.7e-55 219.2 117 83.8
Phvul.001G068300 Phaseolus vulgaris HOM05D004582 ORTHO05D005507 1.7e-55 219.2 117 84.6
Glyma.07G274100 Glycine max HOM05D004582 ORTHO05D005507 3.8e-55 218.0 117 82.9
Atru.chr11.27 Acer truncatum HOM05D004582 ORTHO05D005507 5.0e-55 217.6 115 81.7
BolC2t12361H Brassica oleracea HOM05D004582 ORTHO05D005507 5.0e-55 217.6 128 83.6
Lalb_Chr10g0094681 Lupinus albus HOM05D004582 ORTHO05D005507 5.0e-55 217.6 117 83.8
GSVIVG01034346001 Vitis vinifera HOM05D004582 ORTHO05D005507 6.5e-55 217.2 113 84.1
Potri.008G002400 Populus trichocarpa HOM05D004582 ORTHO05D005507 8.5e-55 216.9 117 81.2
vmacro00989 Vaccinium macrocarpon HOM05D004582 ORTHO05D005507 1.1e-54 216.5 116 81.9
CiPaw.06G093300 Carya illinoinensis HOM05D004582 ORTHO05D005507 1.5e-54 216.1 117 81.2
Actinidia04370 Actinidia chinensis HOM05D004582 ORTHO05D005507 1.9e-54 215.7 115 82.6
Migut.N02765 Erythranthe guttata HOM05D004582 ORTHO05D005507 1.9e-54 215.7 116 81.9
CSS0028000 Camellia sinensis var. sinensis HOM05D004582 ORTHO05D005507 4.2e-54 214.5 115 80.9
MSTRG.25043 Avicennia marina HOM05D004582 ORTHO05D005507 7.2e-54 213.8 114 81.6
Ca_16312_v3 Cicer arietinum L. HOM05D004582 ORTHO05D005507 9.4e-54 213.4 118 82.2
TWI15G0512 Tripterygium wilfordii HOM05D004582 ORTHO05D005507 9.4e-54 213.4 119 81.5
ECA246G1034 Erigeron canadensis HOM05D004582 ORTHO05D005507 1.2e-53 213.0 112 85.7
Hma1.2p1_2673F.1_g326700 Hydrangea macrophylla HOM05D004582 ORTHO05D005507 1.2e-53 213.0 115 82.6
Hund08683 Selenicereus undatus HOM05D004582 ORTHO05D005507 1.2e-53 213.0 115 81.7
TAR629G2421 Trochodendron aralioides HOM05D004582 ORTHO05D005507 1.2e-53 213.0 117 82.1
SalBow6G5789 Salvia bowleyana HOM05D004582 ORTHO05D005507 1.6e-53 212.6 116 80.2
SalBow8G4318 Salvia bowleyana HOM05D004582 ORTHO05D005507 1.6e-53 212.6 116 80.2
Solyc04g008750.3 Solanum lycopersicum HOM05D004582 ORTHO05D005507 1.6e-53 212.6 117 76.9
Sopen04g003930 Solanum pennellii HOM05D004582 ORTHO05D005507 1.6e-53 212.6 117 76.9
PGSC0003DMG400025297 Solanum tuberosum HOM05D004582 ORTHO05D005507 2.1e-53 212.2 117 76.9
SGA_v2.0_scaffold231G43443 Striga asiatica HOM05D004582 ORTHO05D005507 2.1e-53 212.2 116 79.3
Psat5g071960 Pisum sativum HOM05D004582 ORTHO05D005507 3.6e-53 211.5 115 81.7
Gohir.D13G059000 Gossypium hirsutum HOM05D004582 ORTHO05D005507 4.7e-53 211.1 117 78.6
PGR142G2001 Punica granatum HOM05D004582 ORTHO05D005507 6.1e-53 210.7 119 81.5
Gohir.A13G062900 Gossypium hirsutum HOM05D004582 ORTHO05D005507 8.0e-53 210.3 117 77.8
Sc06g0007770 Simmondsia chinensis HOM05D004582 ORTHO05D005507 1.0e-52 209.9 117 81.2
Cc11_g00370 Coffea canephora HOM05D004582 ORTHO05D005507 2.3e-52 208.8 112 82.1
Lsat_1_v5_gn_1_108541 Lactuca sativa HOM05D004582 ORTHO05D005507 2.3e-52 208.8 112 82.1
MD09G1278200 Malus domestica HOM05D004582 ORTHO05D005507 4.0e-52 208.0 115 79.1
Nn8g39808 Nelumbo nucifera HOM05D004582 ORTHO05D005507 5.2e-52 207.6 123 78.9
TPR.G31176 Trifolium pratense HOM05D004582 ORTHO05D005507 5.2e-52 207.6 115 78.3
MD17G1271200 Malus domestica HOM05D004582 ORTHO05D005507 8.8e-52 206.8 113 80.5
MSTRG.1036 Avicennia marina HOM05D004582 ORTHO05D005507 1.5e-51 206.1 116 76.7
CAN.G419.18 Capsicum annuum HOM05D004582 ORTHO05D005507 3.3e-51 204.9 118 75.4
HanXRQChr15g0475831 Helianthus annuus HOM05D004582 ORTHO05D005507 3.3e-51 204.9 112 81.2
MD04G1047800 Malus domestica HOM05D004582 ORTHO05D005507 3.3e-51 204.9 118 76.3
Prupe.3G015100 Prunus persica HOM05D004582 ORTHO05D005507 5.7e-51 204.1 111 79.3
unitig_749.g13837 Utricularia gibba HOM05D004582 ORTHO05D005507 5.7e-51 204.1 116 75.0
MBI11_g25051_MAGBIO Magnolia biondii HOM05D004582 ORTHO05D005507 9.7e-51 203.4 112 80.4
Medtr3g092730 Medicago truncatula HOM05D004582 ORTHO05D005507 9.7e-51 203.4 115 79.1
Medtr3g092770 Medicago truncatula HOM05D004582 ORTHO05D005507 9.7e-51 203.4 115 79.1
Peaxi162Scf00329g00317 Petunia axillaris HOM05D004582 ORTHO05D005507 9.7e-51 203.4 118 75.4
Cfa008860 Carpinus fangiana HOM05D002331 ORTHO05D002624 3.7e-50 201.4 100 89.0
FvH4_4g10630 Fragaria vesca HOM05D004582 ORTHO05D005507 3.7e-50 201.4 113 77.9
FAN07G0418 Fragaria x ananassa HOM05D004582 ORTHO05D005507 3.7e-50 201.4 113 77.9
FAN12G0218 Fragaria x ananassa HOM05D004582 ORTHO05D005507 3.7e-50 201.4 113 77.9
FAN12G1626 Fragaria x ananassa HOM05D004582 ORTHO05D005507 3.7e-50 201.4 113 77.9
FAN17G0627 Fragaria x ananassa HOM05D004582 ORTHO05D005507 3.7e-50 201.4 113 77.9
RcHm_v2.0_Chr4g0406241 Rosa chinensis HOM05D004582 ORTHO05D005507 8.2e-50 200.3 113 77.0
ATR0693G307 Amborella trichopoda HOM05D004582 ORTHO05D005507 1.1e-49 199.9 112 76.8
HPP92_027251 Vanilla planifolia HOM05D004582 ORTHO05D005507 1.8e-49 199.1 116 75.9
Duzib132G0727 Durio zibethinus HOM05D004582 ORTHO05D005507 2.4e-49 198.7 100 86.0
Hma1.2p1_1901F.1_g307030 Hydrangea macrophylla HOM05D004582 ORTHO05D005507 4.1e-49 198.0 108 81.5
ClCG05G012130 Citrullus lanatus HOM05D004582 ORTHO05D005507 7.0e-49 197.2 100 86.0
Os07g0623400 Oryza sativa ssp. japonica HOM05D004582 ORTHO05D005507 7.0e-49 197.2 116 76.7
Gorai.013G066800 Gossypium raimondii HOM05D004582 ORTHO05D005507 1.2e-48 196.4 153 60.8
Nitab4.5_0000129g0010 Nicotiana tabacum HOM05D004582 ORTHO05D005507 1.2e-48 196.4 118 74.6
SEGI_05202 Sequoiadendron giganteum HOM05D004582 ORTHO05D005507 5.9e-48 194.1 115 73.0
Atru.chr11.31 Acer truncatum HOM05D004582 ORTHO05D005507 1.0e-47 193.4 100 84.0
PSO541G0162 Papaver somniferum HOM05D004582 ORTHO05D005507 1.7e-47 192.6 110 76.4
PSO675G8561 Papaver somniferum HOM05D004582 ORTHO05D005507 1.7e-47 192.6 110 76.4
Atru.chr6.1863 Acer truncatum HOM05D004582 ORTHO05D005507 2.9e-47 191.8 100 84.0
Aqoxy5G02794 Aquilegia oxysepala HOM05D004582 ORTHO05D005507 2.9e-47 191.8 111 74.8
AUR62032890 Chenopodium quinoa HOM05D004582 ORTHO05D005507 2.9e-47 191.8 115 75.7
COL.COLO4_33156 Corchorus olitorius HOM05D004582 ORTHO05D005507 5.0e-47 191.0 100 83.0
Aqoxy3G01747 Aquilegia oxysepala HOM05D004582 ORTHO05D005507 6.5e-47 190.7 112 73.2
FAN22G0072 Fragaria x ananassa HOM05D004582 ORTHO05D005507 1.1e-46 189.9 111 76.6
PSO339G5842 Papaver somniferum HOM05D004582 ORTHO05D005507 1.9e-46 189.1 113 74.3
HanXRQChr01g0026751 Helianthus annuus HOM05D004582 ORTHO05D005507 9.4e-46 186.8 110 72.7
HanXRQChr01g0026901 Helianthus annuus HOM05D004582 ORTHO05D005507 9.4e-46 186.8 110 72.7
SGA_v2.0_scaffold417G51254 Striga asiatica HOM05D004582 ORTHO05D005507 9.4e-46 186.8 99 80.8
DCAR_026806 Daucus carota HOM05D004582 ORTHO05D005507 3.6e-45 184.9 100 80.0
CDE07G1374 Ceratophyllum demersum HOM05D004582 ORTHO05D005507 3.0e-44 181.8 95 83.2
AagrBONN_evm.TU.Sc2ySwM_344.5487 Anthoceros agrestis HOM05D004582 ORTHO05D005507 2.8e-42 175.3 107 67.3
Dinv17660 Davidia involucrata HOM05D004582 ORTHO05D005507 2.8e-42 175.3 89 87.6
SalBow6G4393 Salvia bowleyana HOM05D004582 ORTHO05D005507 1.1e-41 173.3 109 67.9
SalBow8G4232 Salvia bowleyana HOM05D004582 ORTHO05D005507 1.1e-41 173.3 109 67.9
SGA_v2.0_scaffold14G06942 Striga asiatica HOM05D004582 ORTHO05D005507 3.1e-41 171.8 144 54.9
CARHR204400 Cardamine hirsuta HOM05D004582 ORTHO05D005507 5.4e-41 171.0 97 79.4
Mapoly0092s0011 Marchantia polymorpha HOM05D004582 ORTHO05D005507 9.1e-41 170.2 107 68.2
Pp3c6_2640 Physcomitrium patens HOM05D004582 ORTHO05D005507 2.0e-40 169.1 107 64.5
SMO358G0649 Selaginella moellendorffii HOM05D004582 ORTHO05D005507 2.3e-39 165.6 108 66.7
Mapoly0166s0006 Marchantia polymorpha HOM05D004582 ORTHO05D005507 6.6e-39 164.1 107 65.4
CiPaw.05G123600 Carya illinoinensis HOM05D004582 ORTHO05D005507 1.5e-38 162.9 79 91.1
Ah.11g040470 Amaranthus hybridus HOM05D004582 ORTHO05D005507 1.6e-37 159.5 142 54.9
Thhalv10015347m.g Eutrema salsugineum HOM05D004582 ORTHO05D005507 2.8e-37 158.7 79 88.6
QL03p073673 Quercus lobata HOM05D004582 ORTHO05D005507 4.7e-37 157.9 82 84.1
Oeu002508.1 Olea europaea HOM05D004582 ORTHO05D005507 8.0e-37 157.1 81 82.7
Oeu039967.1 Olea europaea HOM05D004582 ORTHO05D005507 1.4e-36 156.4 79 83.5
EL10Ac9g23021 Beta vulgaris HOM05D004582 ORTHO05D005507 2.0e-35 152.5 80 83.8
ATR0772G012 Amborella trichopoda HOM05D004582 ORTHO05D005507 8.3e-34 147.1 74 82.4
SEGI_39424 Sequoiadendron giganteum HOM05D004582 ORTHO05D005507 1.7e-31 139.4 79 75.9
CBR_g44398 Chara braunii HOM05D004582 ORTHO05D005507 2.8e-29 132.1 92 60.9
MCO11G500 Micromonas commoda HOM05D004582 ORTHO05D005507 6.8e-28 127.5 100 50.0
Sabra10G0198500 Salix brachista HOM05D004582 ORTHO05D005507 3.4e-27 125.2 100 66.0
PRCOL_00005197 Prasinoderma coloniale HOM05D004582 ORTHO05D005507 1.1e-25 120.2 95 51.6
Sc06g0007290 Simmondsia chinensis HOM05D004582 ORTHO05D005507 3.2e-25 118.6 101 60.4
Nitab4.5_0000129g0060 Nicotiana tabacum HOM05D004582 ORTHO05D005507 1.5e-22 109.8 81 67.9
Nitab4.5_0008730g0050 Nicotiana tabacum HOM05D004582 ORTHO05D005507 5.6e-22 107.8 80 67.5
Lj5g0002326 Lotus japonicus HOM05D004582 ORTHO05D005507 1.6e-21 106.3 63 73.0
Lj5g0003678 Lotus japonicus HOM05D004582 ORTHO05D005507 1.6e-21 106.3 63 73.0
Lj5g0005298 Lotus japonicus HOM05D004582 ORTHO05D005507 1.6e-21 106.3 63 73.0
BcaB01g05656 Brassica carinata HOM05D000467 ORTHO05D000379 1.5e-19 99.8 61 75.4
Haze_11883 Corylus avellana HOM05D004582 ORTHO05D005507 3.7e-18 95.1 79 63.3
Cre02.g116300 Chlamydomonas reinhardtii HOM05D004582 ORTHO05D005507 3.2e-17 92.0 99 40.4
MD07G1114100 Malus domestica HOM05D004582 ORTHO05D005507 9.2e-17 90.5 58 67.2
Rhsim12G0090000 Rhododendron simsii HOM05D004582 ORTHO05D005507 2.3e-15 85.9 154 36.4
Haze_26483 Corylus avellana HOM05D004582 ORTHO05D005507 4.3e-14 81.6 80 42.5
Lsat_1_v5_gn_1_108420 Lactuca sativa HOM05D004582 ORTHO05D005507 6.2e-13 77.8 60 63.3
Cpa.g.sc887.1 Carica papaya HOM05D004582 ORTHO05D005507 2.4e-09 65.9 38 71.1
Nitab4.5_0011163g0030 Nicotiana tabacum HOM05D004582 ORTHO05D005507 3.2e-09 65.5 80 48.8
Cfa023443 Carpinus fangiana HOM05D004582 ORTHO05D123741 1.2e-08 63.5 79 34.2


User provided reference genes

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