Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p61780 Brassica napus HOM05D004329 ORTHO05D005516 6.4e-241 837.0 431 100.0
BraA02t09122Z Brassica rapa HOM05D004329 ORTHO05D005516 7.1e-240 833.6 430 99.5
BolC2t12235H Brassica oleracea HOM05D004329 ORTHO05D005516 9.6e-237 823.2 430 97.9
BcaB07g29807 Brassica carinata HOM05D004329 ORTHO05D005516 3.5e-231 804.7 431 96.1
Thhalv10003854m.g Eutrema salsugineum HOM05D004329 ORTHO05D005516 4.3e-229 797.7 430 93.7
AL8G38730 Arabidopsis lyrata HOM05D004329 ORTHO05D005516 2.1e-228 795.4 430 93.3
Sp2g25150 Schrenkiella parvula HOM05D004329 ORTHO05D005516 2.1e-228 795.4 430 94.0
A06p28670 Brassica napus HOM05D004329 ORTHO05D005516 3.6e-228 794.7 430 93.5
BraA06t25807Z Brassica rapa HOM05D004329 ORTHO05D005516 8.1e-228 793.5 430 93.3
BcaB02g09609 Brassica carinata HOM05D004329 ORTHO05D005516 2.4e-227 792.0 430 94.0
AT5G61970 Arabidopsis thaliana HOM05D004329 ORTHO05D005516 5.3e-227 790.8 430 92.6
Carub.0008s2266 Capsella rubella HOM05D004329 ORTHO05D005516 9.0e-227 790.0 430 92.6
CARHR275760 Cardamine hirsuta HOM05D004329 ORTHO05D005516 9.0e-227 790.0 430 92.8
BcaC01g02451 Brassica carinata HOM05D004329 ORTHO05D005516 2.0e-226 788.9 430 93.0
C03p65130 Brassica napus HOM05D004329 ORTHO05D005516 2.0e-226 788.9 430 93.0
BolC3t18767H Brassica oleracea HOM05D004329 ORTHO05D005516 2.0e-226 788.9 430 93.0
Carub.0005s0295 Capsella rubella HOM05D004329 ORTHO05D005516 2.7e-223 778.5 430 91.4
Aa31LG11G1550 Aethionema arabicum HOM05D004329 ORTHO05D005516 7.6e-218 760.4 430 88.6
THA.LOC104819422 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 2.9e-209 731.9 430 84.4
THA.LOC104823903 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 4.2e-208 728.0 430 85.1
Duzib205G0720 Durio zibethinus HOM05D004329 ORTHO05D005516 9.4e-200 700.3 427 82.4
Atru.chr6.1908 Acer truncatum HOM05D004329 ORTHO05D005516 6.7e-198 694.1 427 81.5
Thecc.03G139600 Theobroma cacao HOM05D004329 ORTHO05D005516 6.7e-198 694.1 427 82.0
Gohir.A07G047200 Gossypium hirsutum HOM05D004329 ORTHO05D005516 1.5e-197 693.0 427 82.2
Potri.015G105600 Populus trichocarpa HOM05D004329 ORTHO05D005516 3.3e-197 691.8 423 82.0
Cfa018712 Carpinus fangiana HOM05D004329 ORTHO05D005516 4.3e-197 691.4 427 81.0
CANSAT80G0883 Cannabis sativa HOM05D004329 ORTHO05D005516 7.4e-197 690.6 420 82.1
CANSAT80G0741 Cannabis sativa HOM05D004329 ORTHO05D005516 9.7e-197 690.3 420 82.1
Gorai.001G054500 Gossypium raimondii HOM05D004329 ORTHO05D005516 2.8e-196 688.7 427 81.3
Gohir.D07G051400 Gossypium hirsutum HOM05D004329 ORTHO05D005516 4.8e-196 688.0 427 81.3
Prupe.5G142700 Prunus persica HOM05D004329 ORTHO05D005516 1.1e-195 686.8 430 80.0
TWI39G0623 Tripterygium wilfordii HOM05D004329 ORTHO05D005516 4.1e-195 684.9 427 81.3
MD14G1148000 Malus domestica HOM05D004329 ORTHO05D005516 9.1e-195 683.7 427 80.1
Potri.012G106200 Populus trichocarpa HOM05D004329 ORTHO05D005516 1.2e-194 683.3 422 81.8
arahy.Tifrunner.gnm1.ann1.IBL9WM Arachis hypogaea HOM05D004329 ORTHO05D005516 5.9e-194 681.0 427 78.7
arahy.Tifrunner.gnm1.ann1.HJ5J7F Arachis hypogaea HOM05D004329 ORTHO05D005516 1.3e-193 679.9 427 78.5
Manes.14G045200 Manihot esculenta HOM05D004329 ORTHO05D005516 1.7e-193 679.5 427 80.8
QL10p000650 Quercus lobata HOM05D004329 ORTHO05D005516 1.7e-193 679.5 420 81.0
Ciclev10031005m.g Citrus clementina HOM05D004329 ORTHO05D005516 2.2e-193 679.1 425 80.5
Dinv13728 Davidia involucrata HOM05D004329 ORTHO05D005516 2.2e-193 679.1 428 79.7
Sc22g0003470 Simmondsia chinensis HOM05D004329 ORTHO05D005516 3.8e-193 678.3 427 79.6
vmacro19178 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 3.8e-193 678.3 426 79.1
Ca_16811_v3 Cicer arietinum L. HOM05D004329 ORTHO05D005516 8.5e-193 677.2 427 78.2
Haze_07104 Corylus avellana HOM05D004329 ORTHO05D005516 8.5e-193 677.2 451 76.5
MD06G1131700 Malus domestica HOM05D004329 ORTHO05D005516 8.5e-193 677.2 420 80.0
Medtr8g100110 Medicago truncatula HOM05D004329 ORTHO05D005516 5.5e-192 674.5 427 77.5
Rhsim08G0196600 Rhododendron simsii HOM05D004329 ORTHO05D005516 5.5e-192 674.5 428 78.5
VMungo0251G1423 Vigna mungo HOM05D004329 ORTHO05D005516 7.2e-192 674.1 427 77.8
Psat7g039240 Pisum sativum HOM05D004329 ORTHO05D005516 9.4e-192 673.7 427 77.5
Nn4g22142 Nelumbo nucifera HOM05D004329 ORTHO05D005516 1.2e-191 673.3 425 78.6
TPR.G12807 Trifolium pratense HOM05D004329 ORTHO05D005516 1.6e-191 672.9 427 77.3
Dinv23217 Davidia involucrata HOM05D004329 ORTHO05D005516 3.6e-191 671.8 429 78.8
Lj4g0026438 Lotus japonicus HOM05D004329 ORTHO05D005516 6.1e-191 671.0 427 78.0
Solyc03g093970.3 Solanum lycopersicum HOM05D004329 ORTHO05D005516 7.9e-191 670.6 428 79.2
Sopen03g024820 Solanum pennellii HOM05D004329 ORTHO05D005516 7.9e-191 670.6 428 79.2
vmacro06162 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 1.4e-190 669.8 428 77.8
Phvul.002G282000 Phaseolus vulgaris HOM05D004329 ORTHO05D005516 1.8e-190 669.5 427 77.0
PGR083G0006 Punica granatum HOM05D004329 ORTHO05D005516 1.8e-190 669.5 420 79.0
Glyma.08G008000 Glycine max HOM05D004329 ORTHO05D005516 3.0e-190 668.7 427 77.3
Hma1.2p1_0493F.1_g164990 Hydrangea macrophylla HOM05D004329 ORTHO05D005516 3.0e-190 668.7 428 78.7
CSS0022050 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 3.9e-190 668.3 428 78.0
MSTRG.22850 Avicennia marina HOM05D004329 ORTHO05D005516 8.8e-190 667.2 423 79.2
EL10Ac7g17942 Beta vulgaris HOM05D004329 ORTHO05D005516 1.1e-189 666.8 430 77.4
ClCG03G012650 Citrullus lanatus HOM05D004329 ORTHO05D005516 2.0e-189 666.0 423 79.4
Actinidia18306 Actinidia chinensis HOM05D004329 ORTHO05D005516 2.6e-189 665.6 428 77.6
RcHm_v2.0_Chr7g0188791 Rosa chinensis HOM05D004329 ORTHO05D005516 4.4e-189 664.8 430 77.7
Sabra15G0125900 Salix brachista HOM05D004329 ORTHO05D005516 7.4e-189 664.1 470 73.8
Sed0013101 Sechium edule HOM05D004329 ORTHO05D005516 9.7e-189 663.7 423 78.7
CAN.G1210.1 Capsicum annuum HOM05D004329 ORTHO05D005516 1.3e-188 663.3 428 78.0
Glyma.05G200600 Glycine max HOM05D004329 ORTHO05D005516 1.3e-188 663.3 427 76.8
MELO3C015126.2 Cucumis melo HOM05D004329 ORTHO05D005516 2.8e-188 662.1 423 79.2
CsaV3_1G043340 Cucumis sativus L. HOM05D004329 ORTHO05D005516 2.8e-188 662.1 423 79.2
Lalb_Chr07g0183781 Lupinus albus HOM05D004329 ORTHO05D005516 2.8e-188 662.1 420 77.6
Actinidia36840 Actinidia chinensis HOM05D004329 ORTHO05D005516 3.7e-188 661.8 428 77.1
FAN13G1968 Fragaria x ananassa HOM05D004329 ORTHO05D005516 3.7e-188 661.8 432 77.3
Nitab4.5_0007718g0050 Nicotiana tabacum HOM05D004329 ORTHO05D005516 3.7e-188 661.8 429 78.1
Peaxi162Scf00935g00018 Petunia axillaris HOM05D004329 ORTHO05D005516 3.7e-188 661.8 429 78.1
SGA_v2.0_scaffold40G15626 Striga asiatica HOM05D004329 ORTHO05D005516 6.3e-188 661.0 421 77.7
TAR374G0799 Trochodendron aralioides HOM05D004329 ORTHO05D005516 6.3e-188 661.0 427 78.0
Manes.06G126200 Manihot esculenta HOM05D004329 ORTHO05D005516 1.1e-187 660.2 428 78.3
Solyc02g062810.4 Solanum lycopersicum HOM05D004329 ORTHO05D005516 1.4e-187 659.8 428 77.6
Sopen02g013850 Solanum pennellii HOM05D004329 ORTHO05D005516 1.8e-187 659.4 428 77.3
COL.COLO4_37247 Corchorus olitorius HOM05D004329 ORTHO05D005516 3.1e-187 658.7 445 76.2
Migut.I00617 Erythranthe guttata HOM05D004329 ORTHO05D005516 3.1e-187 658.7 426 77.5
Sed0023904 Sechium edule HOM05D004329 ORTHO05D005516 4.1e-187 658.3 422 78.9
GSVIVG01008641001 Vitis vinifera HOM05D004329 ORTHO05D005516 4.1e-187 658.3 427 78.0
Eucgr.F03808 Eucalyptus grandis HOM05D004329 ORTHO05D005516 7.0e-187 657.5 430 76.5
FvH4_5g09400 Fragaria vesca HOM05D004329 ORTHO05D005516 5.9e-186 654.4 434 76.5
FAN18G1836 Fragaria x ananassa HOM05D004329 ORTHO05D005516 5.9e-186 654.4 434 76.5
Aqoxy4G00231 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 1.7e-185 652.9 427 77.3
Lj5A87T69 Lonicera japonica HOM05D004329 ORTHO05D005516 2.9e-185 652.1 426 76.8
Lsat_1_v5_gn_4_84600 Lactuca sativa HOM05D004329 ORTHO05D005516 1.4e-184 649.8 431 75.6
Cpa.g.sc13.162 Carica papaya HOM05D004329 ORTHO05D005516 2.7e-183 645.6 389 82.5
CiPaw.09G139600 Carya illinoinensis HOM05D004329 ORTHO05D005516 3.6e-183 645.2 396 80.8
SGA_v2.0_scaffold74G24730 Striga asiatica HOM05D004329 ORTHO05D005516 4.7e-183 644.8 442 73.8
Sabra12G0078600 Salix brachista HOM05D004329 ORTHO05D005516 6.7e-182 641.0 489 69.7
Oeu012844.2 Olea europaea HOM05D004329 ORTHO05D005516 2.6e-181 639.0 482 68.7
ATR1096G004 Amborella trichopoda HOM05D004329 ORTHO05D005516 3.3e-181 638.6 418 75.1
FAN04G0329 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.7e-180 636.3 432 75.2
ECA232G2772 Erigeron canadensis HOM05D004329 ORTHO05D005516 3.7e-180 635.2 424 75.0
Hund02504 Selenicereus undatus HOM05D004329 ORTHO05D005516 5.9e-178 627.9 375 82.9
AUR62041693 Chenopodium quinoa HOM05D004329 ORTHO05D005516 8.5e-177 624.0 393 79.4
HanXRQChr09g0273891 Helianthus annuus HOM05D004329 ORTHO05D005516 1.1e-176 623.6 432 72.7
FAN08G1859 Fragaria x ananassa HOM05D004329 ORTHO05D005516 7.2e-176 620.9 396 78.5
PSO478G2811 Papaver somniferum HOM05D004329 ORTHO05D005516 2.3e-174 615.9 425 72.9
PSO017G7154 Papaver somniferum HOM05D004329 ORTHO05D005516 3.0e-174 615.5 425 73.2
DCAR_016350 Daucus carota HOM05D004329 ORTHO05D005516 4.0e-174 615.1 375 81.1
Actinidia08906 Actinidia chinensis HOM05D000877 ORTHO05D001509 4.5e-170 601.7 370 80.3
AUR62009528 Chenopodium quinoa HOM05D004329 ORTHO05D005516 5.5e-168 594.7 430 71.4
SEGI_15405 Sequoiadendron giganteum HOM05D004329 ORTHO05D005516 7.7e-162 574.3 425 67.5
unitig_32.g11043 Utricularia gibba HOM05D004329 ORTHO05D005516 1.3e-161 573.5 479 62.4
AUR62044173 Chenopodium quinoa HOM05D004329 ORTHO05D005516 2.3e-161 572.8 428 68.7
SalBow1G7365 Salvia bowleyana HOM05D004329 ORTHO05D005516 9.8e-157 557.4 467 64.5
Zm00001eb327290 Zea mays HOM05D004329 ORTHO05D005516 2.3e-153 546.2 426 66.2
PSO081G0143 Papaver somniferum HOM05D004329 ORTHO05D005516 3.9e-153 545.4 421 67.7
MBI13_g15007_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 9.8e-149 530.8 326 80.4
CDE04G3457 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 1.9e-147 526.6 427 64.6
PGSC0003DMG400015501 Solanum tuberosum HOM05D004329 ORTHO05D005516 7.8e-146 521.2 323 79.9
Ah.11g046840 Amaranthus hybridus HOM05D004329 ORTHO05D005516 2.3e-142 509.6 336 75.6
AagrBONN_evm.TU.Sc2ySwM_228.1186 Anthoceros agrestis HOM05D004329 ORTHO05D005516 1.4e-134 483.8 403 60.3
Pp3c15_22190 Physcomitrium patens HOM05D004329 ORTHO05D005516 6.8e-134 481.5 412 58.7
MBI13_g43178_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 5.4e-131 471.9 326 73.9
Mapoly0153s0017 Marchantia polymorpha HOM05D004329 ORTHO05D005516 1.2e-130 470.7 418 57.2
Nitab4.5_0009429g0030 Nicotiana tabacum HOM05D004329 ORTHO05D005516 7.1e-123 444.9 286 78.3
Cc09_g07950 Coffea canephora HOM05D004329 ORTHO05D005516 1.5e-120 437.2 269 80.3
CBR_g20988 Chara braunii HOM05D004329 ORTHO05D005516 6.9e-110 401.7 430 50.0
CDE07G0688 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 2.6e-109 399.8 246 77.6
A02p41850 Brassica napus HOM05D004329 ORTHO05D005516 1.3e-97 360.9 195 98.5
Os08g0323000 Oryza sativa ssp. japonica HOM05D004329 ORTHO05D005516 3.9e-97 359.4 266 68.0
SMO356G0738 Selaginella moellendorffii HOM05D004329 ORTHO05D005516 1.4e-91 340.9 390 45.9
HPP92_028710 Vanilla planifolia HOM05D004329 ORTHO05D005516 2.7e-90 336.7 271 62.0
FAN18G2676 Fragaria x ananassa HOM05D004329 ORTHO05D005516 4.1e-86 322.8 432 47.0
BcaC03g18112 Brassica carinata HOM05D004329 ORTHO05D005516 4.3e-80 302.8 156 97.4
Cc00_g30130 Coffea canephora HOM05D004329 ORTHO05D005516 3.9e-73 279.6 181 77.9
MBI13_g13130_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 7.2e-67 258.8 176 74.4
MCO15G338 Micromonas commoda HOM05D004329 ORTHO05D005516 7.4e-64 248.8 422 36.3
Cre06.g267100 Chlamydomonas reinhardtii HOM05D004329 ORTHO05D005516 3.1e-62 243.4 445 35.7
Aqoxy5G01090 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 6.5e-60 235.7 266 50.0
Cc09_g07990 Coffea canephora HOM05D004329 ORTHO05D005516 1.2e-56 224.9 153 75.2
Cc09_g07980 Coffea canephora HOM05D004329 ORTHO05D005516 2.8e-55 220.3 149 75.2
Nitab4.5_0017885g0010 Nicotiana tabacum HOM05D004329 ORTHO05D005516 1.2e-53 214.9 161 69.6
CDE07G1247 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 1.1e-51 208.4 178 64.0
CSS0034501 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 3.6e-42 176.8 102 81.4
CSS0009974 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 8.9e-41 172.2 105 77.1
TAR622G0210 Trochodendron aralioides HOM05D004329 ORTHO05D005516 3.4e-32 143.7 145 57.2
Solyc02g062830.2 Solanum lycopersicum HOM05D004329 ORTHO05D005516 3.7e-31 140.2 96 72.9
AagrBONN_evm.TU.Sc2ySwM_228.1281 Anthoceros agrestis HOM05D004329 ORTHO05D005516 2.4e-30 137.5 120 53.3
PRCOL_00003443 Prasinoderma coloniale HOM05D004329 ORTHO05D005516 2.0e-29 134.4 338 31.4
Solyc02g062840.1 Solanum lycopersicum HOM05D004329 ORTHO05D005516 2.1e-21 107.8 66 78.8
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 1.1e-17 95.5 78 53.8
Lsat_1_v5_gn_5_81961 Lactuca sativa HOM05D004329 ORTHO05D005516 1.2e-13 82.0 49 75.5
Lsat_1_v5_gn_8_114301 Lactuca sativa HOM05D004329 ORTHO05D005516 6.0e-13 79.7 48 75.0
Zm00001eb202340 Zea mays HOM05D004329 ORTHO05D005516 1.7e-12 78.2 71 46.5
AagrBONN_evm.TU.Sc2ySwM_228.1280 Anthoceros agrestis HOM05D004329 ORTHO05D005516 2.0e-08 64.7 65 50.8
Sopen02g013860 Solanum pennellii HOM05D004329 ORTHO05D026010 5.8e-08 63.2 59 59.3
Hund31053 Selenicereus undatus HOM05D004329 ORTHO05D026010 1.3e-07 62.0 51 62.7
Hund31064 Selenicereus undatus HOM05D004329 ORTHO05D026010 3.8e-07 60.5 51 60.8


User provided reference genes

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