Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p61060 Brassica napus HOM05D001792 ORTHO05D001821 1.1e-19 99.0 49 100.0
BcaC03g18041 Brassica carinata HOM05D001792 ORTHO05D001821 2.3e-17 91.3 45 100.0
A02p41180 Brassica napus HOM05D001792 ORTHO05D001821 8.6e-17 89.4 45 97.8
BcaB07g29870 Brassica carinata HOM05D001792 ORTHO05D001821 4.3e-16 87.0 45 93.3
BcaC03g18042 Brassica carinata HOM05D001792 ORTHO05D001821 5.6e-16 86.7 45 93.3
A02p41190 Brassica napus HOM05D001792 ORTHO05D001821 5.6e-16 86.7 45 93.3
BraA02t09063Z Brassica rapa HOM05D001792 ORTHO05D001821 5.6e-16 86.7 45 93.3
C02p61080 Brassica napus HOM05D001792 ORTHO05D001821 8.0e-15 82.8 45 88.9
BolC2t12156H Brassica oleracea HOM05D001792 ORTHO05D001821 8.0e-15 82.8 45 88.9
A03p46510 Brassica napus HOM05D001792 ORTHO05D001821 1.0e-14 82.4 45 86.7
BcaC02g07734 Brassica carinata HOM05D001792 ORTHO05D001821 5.2e-14 80.1 45 82.2
A04p26730 Brassica napus HOM05D001792 ORTHO05D001821 5.2e-14 80.1 45 82.2
BolC4t27895H Brassica oleracea HOM05D001792 ORTHO05D001821 5.2e-14 80.1 45 82.2
Carub.0006s2079 Capsella rubella HOM05D001792 ORTHO05D001821 5.2e-14 80.1 45 84.4
BcaC09g49680 Brassica carinata HOM05D001792 ORTHO05D001821 2.0e-13 78.2 45 86.7
BolC1t03370H Brassica oleracea HOM05D001792 ORTHO05D001821 2.0e-13 78.2 45 86.7
Thhalv10005522m.g Eutrema salsugineum HOM05D001792 ORTHO05D001821 2.6e-13 77.8 45 84.4
C07p44570 Brassica napus HOM05D001792 ORTHO05D001821 3.4e-13 77.4 46 84.8
BolC7t44978H Brassica oleracea HOM05D001792 ORTHO05D001821 3.4e-13 77.4 46 84.8
Carub.0006s2078 Capsella rubella HOM05D001792 ORTHO05D001821 3.4e-13 77.4 45 82.2
AL6G34140 Arabidopsis lyrata HOM05D001792 ORTHO05D001821 4.4e-13 77.0 45 82.2
Carub.0006s2080 Capsella rubella HOM05D001792 ORTHO05D001821 4.4e-13 77.0 45 80.0
Thhalv10004072m.g Eutrema salsugineum HOM05D001792 ORTHO05D001821 4.4e-13 77.0 45 82.2
AT5G23010 Arabidopsis thaliana HOM05D001792 ORTHO05D001821 9.8e-13 75.9 45 84.4
BcaC06g33195 Brassica carinata HOM05D001792 ORTHO05D001821 9.8e-13 75.9 45 77.8
BcaNung05763 Brassica carinata HOM05D001792 ORTHO05D001821 9.8e-13 75.9 45 77.8
CARHR190520 Cardamine hirsuta HOM05D001792 ORTHO05D001821 9.8e-13 75.9 45 80.0
Sp2g24110 Schrenkiella parvula HOM05D001792 ORTHO05D001821 2.2e-12 74.7 45 77.8
BcaNung02622 Brassica carinata HOM05D001792 ORTHO05D001821 3.7e-12 73.9 46 82.6
C07p44550 Brassica napus HOM05D001792 ORTHO05D001821 3.7e-12 73.9 46 82.6
Aa31LG11G2510 Aethionema arabicum HOM05D001792 ORTHO05D001821 4.9e-12 73.6 45 75.6
AT5G23020 Arabidopsis thaliana HOM05D001792 ORTHO05D001821 4.9e-12 73.6 45 77.8
C01p34000 Brassica napus HOM05D001792 ORTHO05D001821 4.9e-12 73.6 45 77.8
BolC1t03369H Brassica oleracea HOM05D001792 ORTHO05D001821 4.9e-12 73.6 45 77.8
AL6G34150 Arabidopsis lyrata HOM05D001792 ORTHO05D001821 1.4e-11 72.0 45 73.3
BcaC09g49681 Brassica carinata HOM05D001792 ORTHO05D001821 1.4e-11 72.0 44 77.3
BcaC03g16188 Brassica carinata HOM05D001792 ORTHO05D001821 1.9e-11 71.6 44 75.0
A02p25040 Brassica napus HOM05D001792 ORTHO05D001821 1.9e-11 71.6 44 75.0
C02p39660 Brassica napus HOM05D001792 ORTHO05D001821 1.9e-11 71.6 44 75.0
BraA02t07492Z Brassica rapa HOM05D001792 ORTHO05D001821 1.9e-11 71.6 44 75.0
C01p34020 Brassica napus HOM05D001792 ORTHO05D001821 3.2e-11 70.9 53 73.6
Sp6g02930 Schrenkiella parvula HOM05D001792 ORTHO05D001821 3.2e-11 70.9 44 77.3
Thhalv10003976m.g Eutrema salsugineum HOM05D001792 ORTHO05D001821 9.2e-11 69.3 37 86.5
BcaC03g16051 Brassica carinata HOM05D001792 ORTHO05D001821 2.7e-10 67.8 45 77.8
BcaB01g02720 Brassica carinata HOM05D001792 ORTHO05D001821 3.5e-10 67.4 45 75.6
Carub.0002s2517 Capsella rubella HOM05D001792 ORTHO05D001821 4.6e-10 67.0 46 67.4
A02p24240 Brassica napus HOM05D001792 ORTHO05D001821 7.8e-10 66.2 45 75.6
Aa31LG11G2480 Aethionema arabicum HOM05D001792 ORTHO05D001821 1.3e-09 65.5 45 71.1
Aa31LG11G2520 Aethionema arabicum HOM05D001792 ORTHO05D001821 1.7e-09 65.1 45 68.9
C02p38150 Brassica napus HOM05D001792 ORTHO05D001821 5.0e-09 63.5 45 73.3
BolC2t09830H Brassica oleracea HOM05D001792 ORTHO05D001821 5.0e-09 63.5 45 73.3
TWI79G1439 Tripterygium wilfordii HOM05D001792 ORTHO05D001821 6.6e-09 63.2 44 65.9
Cpa.g.sc71.35 Carica papaya HOM05D001792 ORTHO05D001821 1.1e-08 62.4 44 63.6
TWI31G0216 Tripterygium wilfordii HOM05D001792 ORTHO05D001821 1.1e-08 62.4 44 63.6
COL.COLO4_24385 Corchorus olitorius HOM05D001792 ORTHO05D001821 1.5e-08 62.0 44 63.6
Gohir.D10G131900 Gossypium hirsutum HOM05D001792 ORTHO05D001821 1.5e-08 62.0 44 63.6
Gorai.011G145600 Gossypium raimondii HOM05D001792 ORTHO05D001821 1.5e-08 62.0 44 63.6
AL6G34170 Arabidopsis lyrata HOM05D001792 ORTHO05D001821 2.5e-08 61.2 33 84.8
CARHR019120 Cardamine hirsuta HOM05D001792 ORTHO05D001821 2.5e-08 61.2 44 61.4
Thhalv10007073m.g Eutrema salsugineum HOM05D001792 ORTHO05D001821 3.3e-08 60.8 44 59.1
Duzib212G0950 Durio zibethinus HOM05D001792 ORTHO05D001821 5.6e-08 60.1 44 61.4
Gohir.A10G134600 Gossypium hirsutum HOM05D001792 ORTHO05D001821 7.3e-08 59.7 44 61.4
THA.LOC104818365 Tarenaya hassleriana HOM05D001792 ORTHO05D001821 7.3e-08 59.7 44 61.4
Aa31LG7G3190 Aethionema arabicum HOM05D001792 ORTHO05D001821 9.5e-08 59.3 44 59.1
Duzib151G0160 Durio zibethinus HOM05D001792 ORTHO05D001821 9.5e-08 59.3 44 61.4
Sp1g16450 Schrenkiella parvula HOM05D001792 ORTHO05D001821 9.5e-08 59.3 44 59.1
Atru.chr3.1618 Acer truncatum HOM05D001792 ORTHO05D001821 1.2e-07 58.9 44 63.6
Atru.chr8.1337 Acer truncatum HOM05D001792 ORTHO05D001821 1.2e-07 58.9 44 63.6
Dinv05094 Davidia involucrata HOM05D001792 ORTHO05D001821 1.2e-07 58.9 44 61.4
Gohir.A03G096100 Gossypium hirsutum HOM05D001792 ORTHO05D001821 1.2e-07 58.9 44 59.1
Manes.04G049401 Manihot esculenta HOM05D001792 ORTHO05D001821 1.2e-07 58.9 44 59.1
THA.LOC104813896 Tarenaya hassleriana HOM05D001792 ORTHO05D001821 1.2e-07 58.9 44 56.8
ClCG05G010890 Citrullus lanatus HOM05D001792 ORTHO05D001821 1.6e-07 58.5 45 60.0
Gohir.D02G112700 Gossypium hirsutum HOM05D001792 ORTHO05D001821 1.6e-07 58.5 44 59.1
Gorai.005G127500 Gossypium raimondii HOM05D001792 ORTHO05D001821 1.6e-07 58.5 44 59.1
AL1G30940 Arabidopsis lyrata HOM05D001792 ORTHO05D001821 2.1e-07 58.2 44 56.8
AT1G18500 Arabidopsis thaliana HOM05D001792 ORTHO05D001821 2.1e-07 58.2 44 56.8
Carub.0001s1813 Capsella rubella HOM05D001792 ORTHO05D001821 2.1e-07 58.2 44 56.8
MELO3C020296.2 Cucumis melo HOM05D001792 ORTHO05D001821 2.1e-07 58.2 45 60.0
Ciclev10020218m.g Citrus clementina HOM05D001792 ORTHO05D001821 2.8e-07 57.8 44 59.1
Manes.11G115800 Manihot esculenta HOM05D001792 ORTHO05D001821 2.8e-07 57.8 44 59.1
Sed0023965 Sechium edule HOM05D001792 ORTHO05D001821 2.8e-07 57.8 45 57.8
Thecc.04G184000 Theobroma cacao HOM05D001792 ORTHO05D001821 2.8e-07 57.8 44 59.1
Sp5g29260 Schrenkiella parvula HOM05D001792 ORTHO05D001821 3.6e-07 57.4 44 56.8
A09p59930 Brassica napus HOM05D001792 ORTHO05D001821 4.7e-07 57.0 44 56.8
C08p43360 Brassica napus HOM05D001792 ORTHO05D001821 4.7e-07 57.0 44 56.8
BolC8t51885H Brassica oleracea HOM05D001792 ORTHO05D001821 4.7e-07 57.0 44 56.8
BraA09t41364Z Brassica rapa HOM05D001792 ORTHO05D001821 4.7e-07 57.0 44 56.8
CiPaw.01G103600 Carya illinoinensis HOM05D001792 ORTHO05D001821 4.7e-07 57.0 45 57.8
Thhalv10018267m.g Eutrema salsugineum HOM05D001792 ORTHO05D001821 4.7e-07 57.0 44 56.8
Lalb_Chr06g0164461 Lupinus albus HOM05D001792 ORTHO05D001821 4.7e-07 57.0 45 55.6
THA.LOC104818358 Tarenaya hassleriana HOM05D001792 ORTHO05D001821 4.7e-07 57.0 44 59.1
FvH4_1g22410 Fragaria vesca HOM05D001792 ORTHO05D001821 6.2e-07 56.6 45 57.8
FvH4_1g22570 Fragaria vesca HOM05D001792 ORTHO05D001821 6.2e-07 56.6 45 57.8
FAN19G3177 Fragaria x ananassa HOM05D001792 ORTHO05D001821 6.2e-07 56.6 45 57.8
FAN28G1553 Fragaria x ananassa HOM05D001792 ORTHO05D001821 6.2e-07 56.6 45 57.8
Atru.chr3.369 Acer truncatum HOM05D001792 ORTHO05D001821 8.1e-07 56.2 44 61.4
Atru.chr3.370 Acer truncatum HOM05D001792 ORTHO05D001821 8.1e-07 56.2 44 61.4
Eucgr.L01927 Eucalyptus grandis HOM05D001792 ORTHO05D001821 8.1e-07 56.2 45 55.6
Peaxi162Scf00075g01421 Petunia axillaris HOM05D001792 ORTHO05D001821 8.1e-07 56.2 45 53.3
SGA_v2.0_scaffold17G08087 Striga asiatica HOM05D001792 ORTHO05D001821 8.1e-07 56.2 44 54.5
Aa31LG4G4350 Aethionema arabicum HOM05D001792 ORTHO05D001821 1.1e-06 55.8 44 56.8
BcaB07g31860 Brassica carinata HOM05D001792 ORTHO05D001821 1.1e-06 55.8 44 54.5
BcaC05g25747 Brassica carinata HOM05D001792 ORTHO05D001821 1.1e-06 55.8 44 54.5
A06p14540 Brassica napus HOM05D001792 ORTHO05D001821 1.1e-06 55.8 44 54.5
C05p16770 Brassica napus HOM05D001792 ORTHO05D001821 1.1e-06 55.8 44 54.5
BolC5t30378H Brassica oleracea HOM05D001792 ORTHO05D001821 1.1e-06 55.8 44 54.5
BraA06t24580Z Brassica rapa HOM05D001792 ORTHO05D001821 1.1e-06 55.8 44 54.5
CSS0041272 Camellia sinensis var. sinensis HOM05D001792 ORTHO05D001821 1.1e-06 55.8 45 57.8
CANSAT78G0602 Cannabis sativa HOM05D001792 ORTHO05D001821 1.1e-06 55.8 45 55.6
CARHR067180 Cardamine hirsuta HOM05D001792 ORTHO05D001821 1.1e-06 55.8 44 56.8
HanXRQChr11g0345431 Helianthus annuus HOM05D001792 ORTHO05D001821 1.1e-06 55.8 44 59.1
HanXRQChr14g0426981 Helianthus annuus HOM05D001792 ORTHO05D001821 1.1e-06 55.8 44 59.1
RcHm_v2.0_Chr2g0116551 Rosa chinensis HOM05D001792 ORTHO05D001821 1.1e-06 55.8 45 57.8
unitig_52.g17677 Utricularia gibba HOM05D001792 ORTHO05D001821 1.1e-06 55.8 44 54.5
CSS0045396 Camellia sinensis var. sinensis HOM05D001792 ORTHO05D001821 1.4e-06 55.5 45 57.8
Cfa015782 Carpinus fangiana HOM05D001792 ORTHO05D001821 1.4e-06 55.5 45 55.6
CiPaw.01G103800 Carya illinoinensis HOM05D001792 ORTHO05D001821 1.4e-06 55.5 45 55.6
Pp3c4_4420 Physcomitrium patens HOM05D001792 ORTHO05D001821 1.4e-06 55.5 45 53.3
Potri.005G083100 Populus trichocarpa HOM05D001792 ORTHO05D001821 1.4e-06 55.5 44 56.8
SGA_v2.0_scaffold12G06157 Striga asiatica HOM05D001792 ORTHO05D001821 1.4e-06 55.5 44 54.5
CBR_g23345 Chara braunii HOM05D001792 ORTHO05D001821 1.8e-06 55.1 45 53.3
CsaV3_3G021690 Cucumis sativus L. HOM05D001792 ORTHO05D001821 1.8e-06 55.1 45 57.8
ECA248G0333 Erigeron canadensis HOM05D001792 ORTHO05D001821 1.8e-06 55.1 44 56.8
FAN26G1767 Fragaria x ananassa HOM05D001792 ORTHO05D001821 1.8e-06 55.1 45 55.6
HanXRQChr14g0454131 Helianthus annuus HOM05D001792 ORTHO05D001821 1.8e-06 55.1 44 56.8
Lsat_1_v5_gn_1_71501 Lactuca sativa HOM05D001792 ORTHO05D001821 1.8e-06 55.1 44 56.8
Prupe.6G172500 Prunus persica HOM05D001792 ORTHO05D001821 1.8e-06 55.1 45 55.6
MSTRG.21991 Avicennia marina HOM05D001792 ORTHO05D001821 2.3e-06 54.7 44 54.5
Haze_00712 Corylus avellana HOM05D001792 ORTHO05D001821 2.3e-06 54.7 45 55.6
Glyma.19G120600 Glycine max HOM05D001792 ORTHO05D001821 2.3e-06 54.7 45 55.6
Oeu053854.1 Olea europaea HOM05D001792 ORTHO05D001821 2.3e-06 54.7 44 54.5
Phvul.001G091600 Phaseolus vulgaris HOM05D001792 ORTHO05D001821 2.3e-06 54.7 45 53.3
SalBow3G0730 Salvia bowleyana HOM05D001792 ORTHO05D001821 2.3e-06 54.7 44 54.5
Solyc08g014130.3 Solanum lycopersicum HOM05D001792 ORTHO05D001821 2.3e-06 54.7 44 52.3
Sopen08g005060 Solanum pennellii HOM05D001792 ORTHO05D001821 2.3e-06 54.7 44 52.3
PGSC0003DMG400014622 Solanum tuberosum HOM05D001792 ORTHO05D001821 2.3e-06 54.7 44 52.3
AT1G74040 Arabidopsis thaliana HOM05D001792 ORTHO05D001821 3.1e-06 54.3 44 56.8
Carub.0002s2083 Capsella rubella HOM05D001792 ORTHO05D001821 3.1e-06 54.3 44 56.8
Eucgr.A00052 Eucalyptus grandis HOM05D001792 ORTHO05D001821 3.1e-06 54.3 45 53.3
Eucgr.A00249 Eucalyptus grandis HOM05D001792 ORTHO05D001821 3.1e-06 54.3 45 53.3
Glyma.03G005700 Glycine max HOM05D001792 ORTHO05D001821 3.1e-06 54.3 45 55.6
Glyma.19G120400 Glycine max HOM05D001792 ORTHO05D001821 3.1e-06 54.3 45 55.6
Zm00001eb405040 Zea mays HOM05D001792 ORTHO05D001821 3.1e-06 54.3 45 48.9
Ca_11395_v3 Cicer arietinum L. HOM05D001792 ORTHO05D001821 4.0e-06 53.9 45 53.3
Cc04_g12930 Coffea canephora HOM05D001792 ORTHO05D001821 4.0e-06 53.9 44 52.3
Hma1.2p1_0554F.1_g177840 Hydrangea macrophylla HOM05D001792 ORTHO05D001821 4.0e-06 53.9 44 52.3
Medtr1g116500 Medicago truncatula HOM05D001792 ORTHO05D001821 4.0e-06 53.9 45 53.3
Psat6g241040 Pisum sativum HOM05D001792 ORTHO05D001821 4.0e-06 53.9 45 53.3
Sed0001526 Sechium edule HOM05D001792 ORTHO05D001821 4.0e-06 53.9 45 55.6
Zm00001eb093160 Zea mays HOM05D001792 ORTHO05D001821 4.0e-06 53.9 45 46.7
Zm00001eb196510 Zea mays HOM05D001792 ORTHO05D001821 4.0e-06 53.9 45 46.7
Actinidia35902 Actinidia chinensis HOM05D001792 ORTHO05D001821 5.2e-06 53.5 44 54.5
CAN.G653.6 Capsicum annuum HOM05D001792 ORTHO05D001821 5.2e-06 53.5 44 50.0
Glyma.20G245300 Glycine max HOM05D001792 ORTHO05D001821 5.2e-06 53.5 45 51.1
HanXRQChr14g0426921 Helianthus annuus HOM05D001792 ORTHO05D001821 5.2e-06 53.5 44 54.5
Lj5g0027743 Lotus japonicus HOM05D001792 ORTHO05D001821 5.2e-06 53.5 45 51.1
Os11g0142500 Oryza sativa ssp. japonica HOM05D001792 ORTHO05D001821 5.2e-06 53.5 45 46.7
Os12g0138900 Oryza sativa ssp. japonica HOM05D001792 ORTHO05D001821 5.2e-06 53.5 45 46.7
Phvul.007G004600 Phaseolus vulgaris HOM05D001792 ORTHO05D001821 5.2e-06 53.5 45 51.1
TPR.G10415 Trifolium pratense HOM05D001792 ORTHO05D001821 5.2e-06 53.5 45 53.3
AL2G33895 Arabidopsis lyrata HOM05D001792 ORTHO05D001821 6.8e-06 53.1 44 54.5
CAN.G136.14 Capsicum annuum HOM05D001792 ORTHO05D001821 6.8e-06 53.1 44 50.0
Mapoly0002s0332 Marchantia polymorpha HOM05D001792 ORTHO05D001821 6.8e-06 53.1 45 48.9
Nitab4.5_0000013g0570 Nicotiana tabacum HOM05D001792 ORTHO05D001821 6.8e-06 53.1 44 47.7
Peaxi162Scf00075g01331 Petunia axillaris HOM05D001792 ORTHO05D001821 6.8e-06 53.1 45 48.9
Solyc06g053400.3 Solanum lycopersicum HOM05D001792 ORTHO05D001821 6.8e-06 53.1 44 50.0
Sopen06g018460 Solanum pennellii HOM05D001792 ORTHO05D001821 6.8e-06 53.1 44 50.0
PGSC0003DMG400016337 Solanum tuberosum HOM05D001792 ORTHO05D001821 6.8e-06 53.1 44 50.0
HPP92_008942 Vanilla planifolia HOM05D001792 ORTHO05D001821 6.8e-06 53.1 45 51.1
Aqoxy7G00120 Aquilegia oxysepala HOM05D001792 ORTHO05D001821 8.9e-06 52.8 45 51.1
FvH4_1g22460 Fragaria vesca HOM05D001792 ORTHO05D001821 8.9e-06 52.8 44 54.5


User provided reference genes

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