Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p50820 Brassica napus HOM05D005817 ORTHO05D007140 1.7e-168 595.9 303 100.0
BolC2t11164H Brassica oleracea HOM05D005817 ORTHO05D007140 1.4e-162 576.2 307 97.1
BcaC03g17157 Brassica carinata HOM05D005817 ORTHO05D007140 1.6e-137 493.0 293 89.8
BcaC06g31224 Brassica carinata HOM05D005817 ORTHO05D007140 6.7e-136 487.6 293 87.4
C07p33290 Brassica napus HOM05D005817 ORTHO05D007140 9.7e-135 483.8 293 86.7
BolC7t43840H Brassica oleracea HOM05D005817 ORTHO05D007140 9.7e-135 483.8 293 86.7
A06p43560 Brassica napus HOM05D005817 ORTHO05D007140 1.3e-134 483.4 293 86.0
Sp2g13800 Schrenkiella parvula HOM05D005817 ORTHO05D007140 4.8e-134 481.5 297 86.5
Thhalv10004677m.g Eutrema salsugineum HOM05D005817 ORTHO05D007140 6.9e-133 477.6 297 86.2
BraA06t27241Z Brassica rapa HOM05D005817 ORTHO05D007140 3.8e-131 471.9 319 79.3
Carub.0005s0157 Capsella rubella HOM05D005817 ORTHO05D007140 3.0e-128 462.2 297 82.8
AT2G02570 Arabidopsis thaliana HOM05D005817 ORTHO05D007140 7.7e-124 447.6 297 80.5
A02p33050 Brassica napus HOM05D005817 ORTHO05D007140 3.1e-117 425.6 251 90.8
Aa31LG2G7570 Aethionema arabicum HOM05D005817 ORTHO05D007140 9.4e-114 414.1 319 71.2
THA.LOC104824089 Tarenaya hassleriana HOM05D005817 ORTHO05D007140 1.3e-110 403.7 293 73.7
AL5G11840 Arabidopsis lyrata HOM05D005817 ORTHO05D007140 2.8e-110 402.5 255 83.1
BraA02t08326Z Brassica rapa HOM05D005817 ORTHO05D007140 7.7e-108 394.4 239 87.4
CANSAT01G0715 Cannabis sativa HOM05D005817 ORTHO05D007140 5.9e-100 368.2 299 68.2
QL02p103359 Quercus lobata HOM05D005817 ORTHO05D007140 3.8e-99 365.5 295 67.8
Ciclev10002025m.g Citrus clementina HOM05D005817 ORTHO05D007140 8.6e-99 364.4 292 68.2
Nitab4.5_0007689g0010 Nicotiana tabacum HOM05D005817 ORTHO05D007140 9.5e-98 360.9 296 67.6
Solyc01g103020.4 Solanum lycopersicum HOM05D005817 ORTHO05D007140 9.5e-98 360.9 297 67.3
PGSC0003DMG400020713 Solanum tuberosum HOM05D005817 ORTHO05D007140 1.2e-97 360.5 296 67.9
Gohir.D06G122800 Gossypium hirsutum HOM05D005817 ORTHO05D007140 1.6e-97 360.1 293 68.6
Gohir.A06G115800 Gossypium hirsutum HOM05D005817 ORTHO05D007140 2.1e-97 359.8 293 68.6
Gorai.010G142900 Gossypium raimondii HOM05D005817 ORTHO05D007140 4.7e-97 358.6 293 68.3
Atru.chr6.226 Acer truncatum HOM05D005817 ORTHO05D007140 6.1e-97 358.2 287 68.3
Thecc.06G019900 Theobroma cacao HOM05D005817 ORTHO05D007140 6.1e-97 358.2 293 68.6
Duzib160G0844 Durio zibethinus HOM05D005817 ORTHO05D007140 1.0e-96 357.5 293 68.6
CAN.G855.54 Capsicum annuum HOM05D005817 ORTHO05D007140 1.4e-96 357.1 297 67.3
MD08G1248300 Malus domestica HOM05D005817 ORTHO05D007140 1.4e-96 357.1 296 64.9
CiPaw.06G176700 Carya illinoinensis HOM05D005817 ORTHO05D007140 2.3e-96 356.3 288 68.4
Cc02_g23610 Coffea canephora HOM05D005817 ORTHO05D007140 2.3e-96 356.3 298 66.4
MD15G1443200 Malus domestica HOM05D005817 ORTHO05D007140 4.0e-96 355.5 303 63.4
TWI14G0757 Tripterygium wilfordii HOM05D005817 ORTHO05D007140 6.8e-96 354.8 293 65.9
Aqoxy6G00025 Aquilegia oxysepala HOM05D005817 ORTHO05D007140 1.5e-95 353.6 292 66.1
CSS0044256 Camellia sinensis var. sinensis HOM05D005817 ORTHO05D007140 1.5e-95 353.6 300 65.0
Prupe.1G585700 Prunus persica HOM05D005817 ORTHO05D007140 2.0e-95 353.2 296 65.9
TAR376G0556 Trochodendron aralioides HOM05D005817 ORTHO05D007140 2.0e-95 353.2 292 67.8
TAR628G1209 Trochodendron aralioides HOM05D005817 ORTHO05D007140 2.0e-95 353.2 290 68.6
CsaV3_5G027420 Cucumis sativus L. HOM05D005817 ORTHO05D007140 2.6e-95 352.8 288 66.3
HanXRQChr15g0469671 Helianthus annuus HOM05D005817 ORTHO05D007140 2.6e-95 352.8 306 65.0
Lj4g0018327 Lotus japonicus HOM05D005817 ORTHO05D007140 2.6e-95 352.8 295 64.7
Ca_13529_v3 Cicer arietinum L. HOM05D005817 ORTHO05D007140 3.4e-95 352.4 289 65.4
Hma1.2p1_0052F.1_g030020 Hydrangea macrophylla HOM05D005817 ORTHO05D007140 4.4e-95 352.1 299 65.9
Psat4g000960 Pisum sativum HOM05D005817 ORTHO05D007140 5.7e-95 351.7 280 66.1
Eucgr.I02797 Eucalyptus grandis HOM05D005817 ORTHO05D007140 7.5e-95 351.3 298 64.8
Lalb_Chr07g0176811 Lupinus albus HOM05D005817 ORTHO05D007140 1.3e-94 350.5 286 66.8
PSO017G5300 Papaver somniferum HOM05D005817 ORTHO05D007140 1.3e-94 350.5 293 67.2
Nn5g27184 Nelumbo nucifera HOM05D005817 ORTHO05D007140 1.7e-94 350.1 290 65.9
SGA_v2.0_scaffold8G04460 Striga asiatica HOM05D005817 ORTHO05D007140 1.7e-94 350.1 300 64.7
Actinidia01635 Actinidia chinensis HOM05D005817 ORTHO05D007140 2.2e-94 349.7 291 65.6
PSO170G5162 Papaver somniferum HOM05D005817 ORTHO05D007140 2.8e-94 349.4 293 66.9
PGR142G3472 Punica granatum HOM05D005817 ORTHO05D007140 2.8e-94 349.4 295 65.4
TPR.G6004 Trifolium pratense HOM05D005817 ORTHO05D007140 2.8e-94 349.4 285 66.0
CDE07G1199 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 6.3e-94 348.2 283 66.8
Lsat_1_v5_gn_9_83341 Lactuca sativa HOM05D005817 ORTHO05D007140 1.4e-93 347.1 302 65.6
Oeu028475.1 Olea europaea HOM05D005817 ORTHO05D007140 9.2e-93 344.4 298 64.4
COL.COLO4_31118 Corchorus olitorius HOM05D005817 ORTHO05D007140 1.2e-92 344.0 323 61.9
RcHm_v2.0_Chr7g0219661 Rosa chinensis HOM05D005817 ORTHO05D007140 1.2e-92 344.0 296 64.2
EL10Ac6g13990 Beta vulgaris HOM05D005817 ORTHO05D007140 1.6e-92 343.6 301 61.5
Glyma.07G272500 Glycine max HOM05D005817 ORTHO05D007140 2.0e-92 343.2 285 65.6
Sed0006174 Sechium edule HOM05D005817 ORTHO05D007140 2.7e-92 342.8 289 65.1
Oeu028476.1 Olea europaea HOM05D005817 ORTHO05D007140 3.5e-92 342.4 298 64.1
Medtr4g134630 Medicago truncatula HOM05D005817 ORTHO05D007140 7.8e-92 341.3 286 62.6
Phvul.003G075900 Phaseolus vulgaris HOM05D005817 ORTHO05D007140 3.8e-91 339.0 295 63.7
arahy.Tifrunner.gnm1.ann1.NEQE4P Arachis hypogaea HOM05D005817 ORTHO05D007140 5.0e-91 338.6 304 61.8
Migut.N00865 Erythranthe guttata HOM05D005817 ORTHO05D007140 5.0e-91 338.6 299 63.2
FvH4_5g27830 Fragaria vesca HOM05D005817 ORTHO05D007140 1.5e-90 337.0 296 61.8
FAN18G1253 Fragaria x ananassa HOM05D005817 ORTHO05D007140 2.5e-90 336.3 296 61.8
arahy.Tifrunner.gnm1.ann1.86KQ48 Arachis hypogaea HOM05D005817 ORTHO05D007140 4.3e-90 335.5 304 61.2
Ah.03g136770 Amaranthus hybridus HOM05D005817 ORTHO05D007140 1.2e-89 334.0 311 58.8
Rhsim05G0115500 Rhododendron simsii HOM05D005817 ORTHO05D007140 1.2e-89 334.0 346 56.9
Lj9C259G5 Lonicera japonica HOM05D001465 ORTHO05D001434 4.7e-89 332.0 288 64.6
Sabra01G0174300 Salix brachista HOM05D005817 ORTHO05D007140 2.3e-88 329.7 310 61.6
ATR1089G128 Amborella trichopoda HOM05D005817 ORTHO05D007140 5.2e-88 328.6 298 62.1
Haze_09983 Corylus avellana HOM05D005817 ORTHO05D007140 1.5e-87 327.0 350 54.9
AUR62043876 Chenopodium quinoa HOM05D005817 ORTHO05D007140 2.6e-87 326.2 280 63.9
vmacro19830 Vaccinium macrocarpon HOM05D005817 ORTHO05D007140 2.6e-87 326.2 283 62.9
CDE08G0344 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 1.7e-86 323.6 285 64.6
Hund15375 Selenicereus undatus HOM05D005817 ORTHO05D007140 5.4e-85 318.5 270 63.3
Dinv29679 Davidia involucrata HOM05D005817 ORTHO05D007140 4.6e-84 315.5 256 67.2
Peaxi162Scf00011g01920 Petunia axillaris HOM05D005817 ORTHO05D007140 1.3e-83 313.9 332 54.8
Sopen01g045430 Solanum pennellii HOM05D005817 ORTHO05D007140 3.0e-83 312.8 207 77.3
GSVIVG01023145001 Vitis vinifera HOM05D005817 ORTHO05D007140 5.0e-83 312.0 257 66.5
Manes.07G030600 Manihot esculenta HOM05D005817 ORTHO05D007140 1.2e-81 307.4 252 67.9
FAN04G1604 Fragaria x ananassa HOM05D005817 ORTHO05D007140 2.1e-81 306.6 364 50.5
MBI06_g16620_MAGBIO Magnolia biondii HOM05D005817 ORTHO05D007140 6.2e-81 305.1 262 66.8
Manes.10G106400 Manihot esculenta HOM05D005817 ORTHO05D007140 8.0e-81 304.7 250 67.2
Potri.004G229200 Populus trichocarpa HOM05D005817 ORTHO05D007140 8.0e-81 304.7 243 68.3
ECA236G3641 Erigeron canadensis HOM05D000284 ORTHO05D000805 1.1e-80 304.3 275 62.5
Mapoly0107s0026 Marchantia polymorpha HOM05D005817 ORTHO05D007140 1.4e-80 303.9 299 58.5
ClCG11G000310 Citrullus lanatus HOM05D005817 ORTHO05D007140 1.8e-80 303.5 289 61.2
Glyma.17G001900 Glycine max HOM05D005817 ORTHO05D007140 4.4e-79 298.9 252 63.9
AUR62032450 Chenopodium quinoa HOM05D005817 ORTHO05D007140 2.9e-78 296.2 212 72.2
SHI04993 Sapria himalayana HOM05D005817 ORTHO05D007140 6.4e-78 295.0 193 73.1
Os08g0109900 Oryza sativa ssp. japonica HOM05D005817 ORTHO05D007140 1.1e-77 294.3 251 64.9
Sc03g0006230 Simmondsia chinensis HOM05D005817 ORTHO05D007140 1.4e-77 293.9 207 75.8
unitig_22.g6849 Utricularia gibba HOM05D005817 ORTHO05D007140 7.0e-77 291.6 330 53.0
VMungo1215G1434 Vigna mungo HOM05D005817 ORTHO05D007140 7.0e-77 291.6 202 73.8
Lj5C284T7 Lonicera japonica HOM05D005817 ORTHO05D007140 1.0e-75 287.7 211 70.6
Pp3c10_3580 Physcomitrium patens HOM05D005817 ORTHO05D007140 2.1e-73 280.0 330 51.5
FAN08G2336 Fragaria x ananassa HOM05D005817 ORTHO05D007140 5.2e-72 275.4 365 48.8
CDE04G1950 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 2.6e-71 273.1 240 63.3
Actinidia26194 Actinidia chinensis HOM05D005817 ORTHO05D007140 1.4e-69 267.3 297 54.9
Nitab4.5_0003247g0070 Nicotiana tabacum HOM05D005817 ORTHO05D007140 1.9e-69 266.9 240 63.8
AagrBONN_evm.TU.Sc2ySwM_117.207 Anthoceros agrestis HOM05D005817 ORTHO05D007140 5.4e-69 265.4 282 53.5
Hma1.2p1_0052F.1_g030010 Hydrangea macrophylla HOM05D005817 ORTHO05D007140 7.1e-69 265.0 185 74.6
Duzib235G1547 Durio zibethinus HOM05D005817 ORTHO05D007140 1.7e-67 260.4 238 64.7
Cpa.g.sc173.14 Carica papaya HOM05D005817 ORTHO05D007140 2.5e-66 256.5 229 62.0
Pp3c10_3582 Physcomitrium patens HOM05D005817 ORTHO05D007140 1.2e-63 247.7 228 60.1
SMO117G0163 Selaginella moellendorffii HOM05D005817 ORTHO05D007140 2.6e-63 246.5 189 66.7
Aqoxy385s001 Aquilegia oxysepala HOM05D005817 ORTHO05D007140 3.4e-63 246.1 292 53.1
HPP92_002041 Vanilla planifolia HOM05D005817 ORTHO05D007140 1.3e-62 244.2 251 59.4
Pp3c1_22040 Physcomitrium patens HOM05D005817 ORTHO05D007140 1.9e-61 240.4 259 52.9
CDE02G1227 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 1.6e-60 237.3 280 52.1
Pp3c14_9240 Physcomitrium patens HOM05D005817 ORTHO05D007140 1.7e-59 233.8 294 49.7
Lalb_Chr12g0195861 Lupinus albus HOM05D005817 ORTHO05D007140 3.9e-59 232.6 165 72.1
MSTRG.27880 Avicennia marina HOM05D005817 ORTHO05D007140 1.4e-56 224.2 222 57.7
RcHm_v2.0_Chr5g0068831 Rosa chinensis HOM05D005817 ORTHO05D007140 3.1e-56 223.0 156 76.3
CBR_g40810 Chara braunii HOM05D005817 ORTHO05D007140 4.9e-54 215.7 344 42.2
Zm00001eb174130 Zea mays HOM05D005817 ORTHO05D007140 3.4e-47 193.0 132 77.3
MSTRG.601 Avicennia marina HOM05D005817 ORTHO05D007140 2.7e-44 183.3 200 52.0
Dinv29634 Davidia involucrata HOM05D005817 ORTHO05D007140 1.9e-37 160.6 154 59.7
MCO12G229 Micromonas commoda HOM05D005817 ORTHO05D007140 1.3e-25 121.3 296 31.1
Cre02.g106550 Chlamydomonas reinhardtii HOM05D005817 ORTHO05D007140 4.2e-21 106.3 188 37.8
VMungo0766G0001 Vigna mungo HOM05D005817 ORTHO05D007140 7.2e-21 105.5 111 54.1
CARHR145100 Cardamine hirsuta HOM05D005817 ORTHO05D007140 1.2e-15 88.2 68 67.6
PRCOL_00002712 Prasinoderma coloniale HOM05D005817 ORTHO05D007140 2.2e-14 84.0 187 35.8
Thhalv10005196m.g Eutrema salsugineum HOM05D005817 ORTHO05D007140 1.1e-13 81.6 52 84.6
SEGI_07435 Sequoiadendron giganteum HOM05D005817 ORTHO05D007140 2.1e-12 77.4 87 51.7
FvH4_3g40414 Fragaria vesca HOM05D005817 ORTHO05D007140 5.1e-11 72.8 50 66.0
COL.COLO4_38165 Corchorus olitorius HOM05D011921 ORTHO05D160408 2.4e-08 63.9 178 35.4
VMungo1148G0001 Vigna mungo HOM05D005817 ORTHO05D007140 5.0e-06 56.2 51 60.8


User provided reference genes

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