Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p43670 Brassica napus HOM05D001565 ORTHO05D103344 7.3e-33 143.3 71 100.0
AL5G34350 Arabidopsis lyrata HOM05D001565 ORTHO05D001725 8.1e-08 60.1 48 70.8
BcaB02g08526 Brassica carinata HOM05D001565 ORTHO05D001725 8.1e-08 60.1 48 70.8
BcaC02g09166 Brassica carinata HOM05D001565 ORTHO05D001725 8.1e-08 60.1 48 70.8
A04p06150 Brassica napus HOM05D001565 ORTHO05D001725 8.1e-08 60.1 48 70.8
A07p21610 Brassica napus HOM05D001565 ORTHO05D001725 8.1e-08 60.1 48 70.8
A09p46430 Brassica napus HOM05D001565 ORTHO05D001725 8.1e-08 60.1 48 70.8
C04p39170 Brassica napus HOM05D001565 ORTHO05D001725 8.1e-08 60.1 48 70.8
C06p21240 Brassica napus HOM05D001565 ORTHO05D001725 8.1e-08 60.1 48 70.8
C08p28770 Brassica napus HOM05D001565 ORTHO05D001725 8.1e-08 60.1 48 70.8
BolC4t25489H Brassica oleracea HOM05D001565 ORTHO05D001725 8.1e-08 60.1 48 70.8
BolC6t37309H Brassica oleracea HOM05D001565 ORTHO05D001725 8.1e-08 60.1 48 70.8
BraA04t16318Z Brassica rapa HOM05D001565 ORTHO05D001725 8.1e-08 60.1 48 70.8
BraA07t29843Z Brassica rapa HOM05D001565 ORTHO05D001725 8.1e-08 60.1 48 70.8
BraA09t40108Z Brassica rapa HOM05D001565 ORTHO05D001725 8.1e-08 60.1 48 70.8
Carub.0005s2000 Capsella rubella HOM05D001565 ORTHO05D001725 8.1e-08 60.1 48 70.8
CARHR163330 Cardamine hirsuta HOM05D001565 ORTHO05D001725 8.1e-08 60.1 48 70.8
Sp5g08910 Schrenkiella parvula HOM05D001565 ORTHO05D001725 8.1e-08 60.1 48 70.8
BcaB01g00279 Brassica carinata HOM05D001565 ORTHO05D001725 1.1e-07 59.7 48 68.8
BcaB02g07787 Brassica carinata HOM05D001565 ORTHO05D001725 1.1e-07 59.7 48 68.8
BolC8t50480H Brassica oleracea HOM05D001565 ORTHO05D001725 1.1e-07 59.7 48 68.8
BcaC02g07543 Brassica carinata HOM05D001565 ORTHO05D001725 1.4e-07 59.3 48 68.8
BcaC02g07545 Brassica carinata HOM05D001565 ORTHO05D001725 1.4e-07 59.3 48 68.8
A03p20500 Brassica napus HOM05D001565 ORTHO05D001725 1.4e-07 59.3 48 68.8
A04p28410 Brassica napus HOM05D001565 ORTHO05D001725 1.4e-07 59.3 48 68.8
C03p24100 Brassica napus HOM05D001565 ORTHO05D001725 1.4e-07 59.3 48 68.8
C04p65720 Brassica napus HOM05D001565 ORTHO05D001725 1.4e-07 59.3 48 68.8
BolC3t14802H Brassica oleracea HOM05D001565 ORTHO05D001725 1.4e-07 59.3 48 68.8
BolC4t28073H Brassica oleracea HOM05D001565 ORTHO05D001725 1.4e-07 59.3 48 68.8
BraA03t11293Z Brassica rapa HOM05D001565 ORTHO05D001725 1.4e-07 59.3 48 68.8
BraA04t18319Z Brassica rapa HOM05D001565 ORTHO05D001725 1.4e-07 59.3 48 68.8
Carub.0004s1908 Capsella rubella HOM05D001565 ORTHO05D001725 1.4e-07 59.3 48 68.8
CARHR131700 Cardamine hirsuta HOM05D001565 ORTHO05D001725 1.4e-07 59.3 48 68.8
Sp4g19500 Schrenkiella parvula HOM05D001565 ORTHO05D001725 1.4e-07 59.3 48 68.8
BcaB06g28981 Brassica carinata HOM05D001565 ORTHO05D001725 1.8e-07 58.9 48 66.7
Thhalv10010772m.g Eutrema salsugineum HOM05D001565 ORTHO05D001725 1.8e-07 58.9 48 68.8
AT3G53430 Arabidopsis thaliana HOM05D001565 ORTHO05D001725 2.4e-07 58.5 47 70.2
AL4G33550 Arabidopsis lyrata HOM05D001565 ORTHO05D001725 3.1e-07 58.2 48 66.7
Thhalv10017332m.g Eutrema salsugineum HOM05D001565 ORTHO05D001725 3.1e-07 58.2 48 66.7
Aa31LG10G8620 Aethionema arabicum HOM05D001565 ORTHO05D001725 5.2e-07 57.4 48 66.7
AT2G37190 Arabidopsis thaliana HOM05D001565 ORTHO05D001725 8.9e-07 56.6 47 66.0
Sabra06G0058500 Salix brachista HOM05D001565 ORTHO05D001725 1.5e-06 55.8 48 62.5
Zm00001eb072000 Zea mays HOM05D001565 ORTHO05D001725 1.5e-06 55.8 48 62.5
Zm00001eb188040 Zea mays HOM05D001565 ORTHO05D001725 1.5e-06 55.8 48 62.5
Zm00001eb347390 Zea mays HOM05D001565 ORTHO05D001725 1.5e-06 55.8 48 62.5
Aa31LG1G12620 Aethionema arabicum HOM05D001565 ORTHO05D001725 2.0e-06 55.5 47 66.0
Zm00001eb084920 Zea mays HOM05D001565 ORTHO05D001725 2.0e-06 55.5 48 60.4
BcaC04g19728 Brassica carinata HOM05D001565 ORTHO05D001725 2.6e-06 55.1 46 67.4
A10p17880 Brassica napus HOM05D001565 ORTHO05D001725 2.6e-06 55.1 46 67.4
C09p53400 Brassica napus HOM05D001565 ORTHO05D001725 2.6e-06 55.1 46 67.4
BolC9t58213H Brassica oleracea HOM05D001565 ORTHO05D001725 2.6e-06 55.1 46 67.4
BraA10t43866Z Brassica rapa HOM05D001565 ORTHO05D001725 2.6e-06 55.1 46 67.4
Lsat_1_v5_gn_6_30521 Lactuca sativa HOM05D001565 ORTHO05D001725 2.6e-06 55.1 57 54.4
Sabra18G0119700 Salix brachista HOM05D001565 ORTHO05D001725 2.6e-06 55.1 48 62.5
Sabra18G0119800 Salix brachista HOM05D001565 ORTHO05D001725 2.6e-06 55.1 48 62.5
Sp6g22240 Schrenkiella parvula HOM05D001565 ORTHO05D001725 2.6e-06 55.1 46 67.4
BcaB08g36366 Brassica carinata HOM05D001565 ORTHO05D001725 3.4e-06 54.7 46 65.2
Ca_19257_v3 Cicer arietinum L. HOM05D001565 ORTHO05D001725 3.4e-06 54.7 48 62.5
Ciclev10029416m.g Citrus clementina HOM05D001565 ORTHO05D001725 3.4e-06 54.7 48 62.5
Ca_01411_v3 Cicer arietinum L. HOM05D001565 ORTHO05D001725 4.4e-06 54.3 48 62.5
Ca_11472_v3 Cicer arietinum L. HOM05D001565 ORTHO05D001725 4.4e-06 54.3 48 62.5
Ca_29710_v3 Cicer arietinum L. HOM05D001565 ORTHO05D001725 4.4e-06 54.3 48 62.5
Lj1P193T24 Lonicera japonica HOM05D001565 ORTHO05D001725 4.4e-06 54.3 48 62.5
PGR004G0185 Punica granatum HOM05D001565 ORTHO05D001725 4.4e-06 54.3 48 62.5
PGR142G2281 Punica granatum HOM05D001565 ORTHO05D001725 4.4e-06 54.3 48 62.5
TWI77G0002 Tripterygium wilfordii HOM05D001565 ORTHO05D001725 4.4e-06 54.3 48 62.5
Ah.08g211820 Amaranthus hybridus HOM05D001565 ORTHO05D001725 5.8e-06 53.9 49 59.2
AT5G60670 Arabidopsis thaliana HOM05D001565 ORTHO05D001725 5.8e-06 53.9 46 65.2
EL10Ac7g16553 Beta vulgaris HOM05D001565 ORTHO05D001725 5.8e-06 53.9 48 58.3
Carub.0008s2135 Capsella rubella HOM05D001565 ORTHO05D001725 5.8e-06 53.9 46 65.2
CARHR274350 Cardamine hirsuta HOM05D001565 ORTHO05D001725 5.8e-06 53.9 46 65.2
Thhalv10014862m.g Eutrema salsugineum HOM05D001565 ORTHO05D001725 5.8e-06 53.9 46 65.2
Potri.006G077200 Populus trichocarpa HOM05D001565 ORTHO05D001725 5.8e-06 53.9 48 60.4
SalBow3G2426 Salvia bowleyana HOM05D001565 ORTHO05D001725 5.8e-06 53.9 48 60.4
Zm00001eb430180 Zea mays HOM05D001565 ORTHO05D001725 5.8e-06 53.9 48 58.3
Cpa.g.sc216.4 Carica papaya HOM05D001565 ORTHO05D001725 7.6e-06 53.5 48 60.4
Cfa017563 Carpinus fangiana HOM05D001565 ORTHO05D001725 7.6e-06 53.5 48 60.4
CiPaw.09G176200 Carya illinoinensis HOM05D001565 ORTHO05D001725 7.6e-06 53.5 48 60.4
CiPaw.10G133800 Carya illinoinensis HOM05D001565 ORTHO05D001725 7.6e-06 53.5 48 60.4
CiPaw.13G113300 Carya illinoinensis HOM05D001565 ORTHO05D001725 7.6e-06 53.5 48 60.4
Haze_20591 Corylus avellana HOM05D001565 ORTHO05D001725 7.6e-06 53.5 48 60.4
Migut.N02600 Erythranthe guttata HOM05D001565 ORTHO05D001725 7.6e-06 53.5 48 60.4
FvH4_3g32230 Fragaria vesca HOM05D001565 ORTHO05D001725 7.6e-06 53.5 48 60.4
FAN11G2082 Fragaria x ananassa HOM05D001565 ORTHO05D001725 7.6e-06 53.5 48 60.4
FAN16G0013 Fragaria x ananassa HOM05D001565 ORTHO05D001725 7.6e-06 53.5 48 60.4
FAN25G2909 Fragaria x ananassa HOM05D001565 ORTHO05D001725 7.6e-06 53.5 48 60.4
HanXRQChr06g0174691 Helianthus annuus HOM05D001565 ORTHO05D029147 7.6e-06 53.5 42 61.9
Lalb_Chr22g0350241 Lupinus albus HOM05D001565 ORTHO05D001725 7.6e-06 53.5 48 60.4
MD03G1118000 Malus domestica HOM05D001565 ORTHO05D001725 7.6e-06 53.5 48 60.4
MD04G1097900 Malus domestica HOM05D001565 ORTHO05D001725 7.6e-06 53.5 48 60.4
MD12G1118900 Malus domestica HOM05D001565 ORTHO05D001725 7.6e-06 53.5 48 60.4
Oeu001353.1 Olea europaea HOM05D001565 ORTHO05D001725 7.6e-06 53.5 48 60.4
Oeu027988.1 Olea europaea HOM05D001565 ORTHO05D001725 7.6e-06 53.5 48 60.4
Oeu059975.1 Olea europaea HOM05D001565 ORTHO05D001725 7.6e-06 53.5 48 60.4
SalBow3G3195 Salvia bowleyana HOM05D001565 ORTHO05D001725 7.6e-06 53.5 48 60.4
SalBow3G3702 Salvia bowleyana HOM05D001565 ORTHO05D001725 7.6e-06 53.5 48 60.4
PGSC0003DMG400008079 Solanum tuberosum HOM05D001565 ORTHO05D001725 7.6e-06 53.5 48 60.4
PGSC0003DMG400033341 Solanum tuberosum HOM05D001565 ORTHO05D001725 7.6e-06 53.5 48 60.4
THA.LOC104823448 Tarenaya hassleriana HOM05D001565 ORTHO05D001725 7.6e-06 53.5 48 62.5
TPR.G15565 Trifolium pratense HOM05D001565 ORTHO05D001725 7.6e-06 53.5 48 60.4
Ah.15g092370 Amaranthus hybridus HOM05D001565 ORTHO05D001725 9.9e-06 53.1 48 60.4
arahy.Tifrunner.gnm1.ann1.09M2FB Arachis hypogaea HOM05D001565 ORTHO05D001725 9.9e-06 53.1 48 60.4
arahy.Tifrunner.gnm1.ann1.C3IVFD Arachis hypogaea HOM05D001565 ORTHO05D001725 9.9e-06 53.1 48 60.4
arahy.Tifrunner.gnm1.ann1.JI8LYR Arachis hypogaea HOM05D001565 ORTHO05D001725 9.9e-06 53.1 48 60.4
Cpa.g.sc1196.1 Carica papaya HOM05D001565 ORTHO05D001725 9.9e-06 53.1 48 60.4
Cfa011314 Carpinus fangiana HOM05D001565 ORTHO05D001725 9.9e-06 53.1 48 60.4
Dinv32742 Davidia involucrata HOM05D001565 ORTHO05D001725 9.9e-06 53.1 48 60.4
Migut.D02277 Erythranthe guttata HOM05D001565 ORTHO05D001725 9.9e-06 53.1 48 58.3
Migut.J00546 Erythranthe guttata HOM05D001565 ORTHO05D001725 9.9e-06 53.1 48 58.3
FvH4_3g04190 Fragaria vesca HOM05D001565 ORTHO05D001725 9.9e-06 53.1 48 60.4
FvH4_6g15870 Fragaria vesca HOM05D001565 ORTHO05D001725 9.9e-06 53.1 48 60.4
FAN02G0911 Fragaria x ananassa HOM05D001565 ORTHO05D001725 9.9e-06 53.1 48 60.4
FAN05G0356 Fragaria x ananassa HOM05D001565 ORTHO05D001725 9.9e-06 53.1 48 60.4
FAN09G1571 Fragaria x ananassa HOM05D001565 ORTHO05D001725 9.9e-06 53.1 48 60.4
FAN14G2400 Fragaria x ananassa HOM05D001565 ORTHO05D001725 9.9e-06 53.1 48 60.4
FAN16G2527 Fragaria x ananassa HOM05D001565 ORTHO05D001725 9.9e-06 53.1 48 60.4
Glyma.10G053100 Glycine max HOM05D001565 ORTHO05D001725 9.9e-06 53.1 48 56.2
Glyma.13G140100 Glycine max HOM05D001565 ORTHO05D001725 9.9e-06 53.1 48 56.2
Hma1.2p1_0055F.1_g031540 Hydrangea macrophylla HOM05D001565 ORTHO05D001725 9.9e-06 53.1 48 60.4
Hma1.2p1_0614F.1_g189490 Hydrangea macrophylla HOM05D001565 ORTHO05D001725 9.9e-06 53.1 48 60.4
Lsat_1_v5_gn_1_54400 Lactuca sativa HOM05D001565 ORTHO05D001725 9.9e-06 53.1 48 60.4
Lj2P111T57 Lonicera japonica HOM05D001565 ORTHO05D001725 9.9e-06 53.1 48 60.4
Lj3A981T70 Lonicera japonica HOM05D001565 ORTHO05D001725 9.9e-06 53.1 48 60.4
Manes.04G021000 Manihot esculenta HOM05D001565 ORTHO05D001725 9.9e-06 53.1 48 60.4
Manes.08G007000 Manihot esculenta HOM05D001565 ORTHO05D001725 9.9e-06 53.1 48 60.4
Manes.11G145400 Manihot esculenta HOM05D001565 ORTHO05D001725 9.9e-06 53.1 48 60.4
Nitab4.5_0000106g0160 Nicotiana tabacum HOM05D001565 ORTHO05D001725 9.9e-06 53.1 48 60.4
Peaxi162Scf00101g00052 Petunia axillaris HOM05D001565 ORTHO05D001725 9.9e-06 53.1 48 60.4
Potri.018G145200 Populus trichocarpa HOM05D001565 ORTHO05D001725 9.9e-06 53.1 48 60.4
Potri.018G145504 Populus trichocarpa HOM05D001565 ORTHO05D001725 9.9e-06 53.1 48 60.4
Potri.018G145506 Populus trichocarpa HOM05D001565 ORTHO05D001725 9.9e-06 53.1 48 60.4
Potri.018G146600 Populus trichocarpa HOM05D001565 ORTHO05D001725 9.9e-06 53.1 48 60.4
Prupe.6G101700 Prunus persica HOM05D001565 ORTHO05D001725 9.9e-06 53.1 48 60.4
Prupe.6G236800 Prunus persica HOM05D001565 ORTHO05D001725 9.9e-06 53.1 48 60.4
QL01p022172 Quercus lobata HOM05D001565 ORTHO05D001725 9.9e-06 53.1 48 58.3
QL08p055790 Quercus lobata HOM05D001565 ORTHO05D001725 9.9e-06 53.1 48 58.3
RcHm_v2.0_Chr3g0469581 Rosa chinensis HOM05D001565 ORTHO05D001725 9.9e-06 53.1 48 60.4
RcHm_v2.0_Chr5g0058851 Rosa chinensis HOM05D001565 ORTHO05D001725 9.9e-06 53.1 48 60.4
Solyc11g065670.1 Solanum lycopersicum HOM05D001565 ORTHO05D001725 9.9e-06 53.1 48 60.4
Solyc11g069440.1 Solanum lycopersicum HOM05D001565 ORTHO05D001725 9.9e-06 53.1 48 60.4
Sopen11g025410 Solanum pennellii HOM05D001565 ORTHO05D001725 9.9e-06 53.1 48 60.4
Sopen11g028160 Solanum pennellii HOM05D001565 ORTHO05D001725 9.9e-06 53.1 48 60.4
PGSC0003DMG400003368 Solanum tuberosum HOM05D001565 ORTHO05D001725 9.9e-06 53.1 48 60.4
SGA_v2.0_scaffold126G33931 Striga asiatica HOM05D001565 ORTHO05D001725 9.9e-06 53.1 48 60.4
SGA_v2.0_scaffold61G21132 Striga asiatica HOM05D001565 ORTHO05D001725 9.9e-06 53.1 48 60.4
SGA_v2.0_scaffold75G24863 Striga asiatica HOM05D001565 ORTHO05D001725 9.9e-06 53.1 48 60.4
SGA_v2.0_scaffold97G29234 Striga asiatica HOM05D001565 ORTHO05D001725 9.9e-06 53.1 48 60.4
THA.LOC104810858 Tarenaya hassleriana HOM05D001565 ORTHO05D001725 9.9e-06 53.1 48 60.4
TWI74G0785 Tripterygium wilfordii HOM05D001565 ORTHO05D001725 9.9e-06 53.1 48 60.4
GSVIVG01016274001 Vitis vinifera HOM05D001565 ORTHO05D001725 9.9e-06 53.1 48 60.4
Zm00001eb251610 Zea mays HOM05D001565 ORTHO05D001725 9.9e-06 53.1 48 60.4


User provided reference genes

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