Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p42000 Brassica napus HOM05D003531 ORTHO05D004354 3.4e-45 184.5 85 100.0
BolC2t10232H Brassica oleracea HOM05D003531 ORTHO05D004354 3.8e-44 181.0 85 97.6
Sp3g06930 Schrenkiella parvula HOM05D003531 ORTHO05D004354 1.4e-38 162.5 83 85.5
Thhalv10020119m.g Eutrema salsugineum HOM05D003531 ORTHO05D004354 4.5e-37 157.5 83 81.9
Cpa.g.sc125.24 Carica papaya HOM05D003531 ORTHO05D004354 3.8e-36 154.5 81 77.8
THA.LOC104827429 Tarenaya hassleriana HOM05D003531 ORTHO05D004354 4.9e-36 154.1 83 79.5
Aa31LG5G18570 Aethionema arabicum HOM05D002263 ORTHO05D003537 8.4e-36 153.3 83 79.5
Manes.07G007000 Manihot esculenta HOM05D003531 ORTHO05D004354 8.4e-36 153.3 81 75.3
Dinv09345 Davidia involucrata HOM05D003531 ORTHO05D004354 4.2e-35 151.0 81 74.1
Manes.10G140700 Manihot esculenta HOM05D003531 ORTHO05D004354 4.2e-35 151.0 81 74.1
Dinv43430 Davidia involucrata HOM05D003531 ORTHO05D004354 9.3e-35 149.8 81 72.8
CANSAT80G0550 Cannabis sativa HOM05D003531 ORTHO05D004354 2.7e-34 148.3 81 72.8
Ciclev10030635m.g Citrus clementina HOM05D003531 ORTHO05D004354 3.5e-34 147.9 83 72.3
Hma1.2p1_0495F.1_g165700 Hydrangea macrophylla HOM05D003531 ORTHO05D004354 3.5e-34 147.9 81 71.6
Nn2g15298 Nelumbo nucifera HOM05D003531 ORTHO05D004354 3.5e-34 147.9 81 72.8
ClCG09G004050 Citrullus lanatus HOM05D003531 ORTHO05D004354 4.6e-34 147.5 81 72.8
MELO3C023561.2 Cucumis melo HOM05D003531 ORTHO05D004354 4.6e-34 147.5 81 72.8
CsaV3_7G030950 Cucumis sativus L. HOM05D003531 ORTHO05D004354 4.6e-34 147.5 81 72.8
Potri.001G264800 Populus trichocarpa HOM05D003531 ORTHO05D004354 7.9e-34 146.7 81 71.6
FvH4_7g01200 Fragaria vesca HOM05D003531 ORTHO05D004354 1.8e-33 145.6 81 70.4
Sabra16G0162700 Salix brachista HOM05D003531 ORTHO05D004354 1.8e-33 145.6 81 70.4
TAR369G0316 Trochodendron aralioides HOM05D003531 ORTHO05D004354 1.8e-33 145.6 81 72.8
Cc02_g28130 Coffea canephora HOM05D003531 ORTHO05D004354 2.3e-33 145.2 81 70.4
Solyc01g087430.3 Solanum lycopersicum HOM05D003531 ORTHO05D004354 3.0e-33 144.8 83 71.1
Sopen01g034370 Solanum pennellii HOM05D003531 ORTHO05D004354 3.0e-33 144.8 83 71.1
Haze_03181 Corylus avellana HOM05D003531 ORTHO05D004354 5.1e-33 144.1 81 70.4
QL04p008146 Quercus lobata HOM05D003531 ORTHO05D004354 5.1e-33 144.1 81 70.4
QL04p008498 Quercus lobata HOM05D003531 ORTHO05D004354 5.1e-33 144.1 81 70.4
Sed0002980 Sechium edule HOM05D003531 ORTHO05D004354 6.7e-33 143.7 81 69.1
CSS0044266 Camellia sinensis var. sinensis HOM05D003531 ORTHO05D004354 8.7e-33 143.3 81 69.1
Sed0001045 Sechium edule HOM05D003531 ORTHO05D004354 1.5e-32 142.5 81 70.4
Sc11g0009100 Simmondsia chinensis HOM05D003531 ORTHO05D004354 1.5e-32 142.5 81 69.1
TAR633G0763 Trochodendron aralioides HOM05D003531 ORTHO05D004354 1.5e-32 142.5 81 70.4
CiPaw.13G006400 Carya illinoinensis HOM05D003531 ORTHO05D004354 2.5e-32 141.7 81 69.1
Lsat_1_v5_gn_4_31500 Lactuca sativa HOM05D003531 ORTHO05D004354 2.5e-32 141.7 81 70.4
Thecc.01G409300 Theobroma cacao HOM05D003531 ORTHO05D004354 2.5e-32 141.7 81 70.4
Nn7g36242 Nelumbo nucifera HOM05D003531 ORTHO05D004354 3.3e-32 141.4 81 69.1
Atru.chr11.2606 Acer truncatum HOM05D003531 ORTHO05D004354 4.3e-32 141.0 80 67.5
CiPaw.14G001000 Carya illinoinensis HOM05D003531 ORTHO05D004354 4.3e-32 141.0 81 69.1
Duzib138G1641 Durio zibethinus HOM05D003531 ORTHO05D004354 4.3e-32 141.0 81 69.1
TWI73G0346 Tripterygium wilfordii HOM05D003531 ORTHO05D004354 4.3e-32 141.0 81 67.9
Gohir.A08G143500 Gossypium hirsutum HOM05D003531 ORTHO05D004354 5.6e-32 140.6 81 69.1
Gohir.D08G164500 Gossypium hirsutum HOM05D003531 ORTHO05D004354 5.6e-32 140.6 81 69.1
Gorai.004G171500 Gossypium raimondii HOM05D003531 ORTHO05D004354 5.6e-32 140.6 81 69.1
EL10Ac2g04341 Beta vulgaris HOM05D003531 ORTHO05D004354 7.4e-32 140.2 81 67.9
Eucgr.G03370 Eucalyptus grandis HOM05D003531 ORTHO05D004354 7.4e-32 140.2 81 66.7
Actinidia21545 Actinidia chinensis HOM05D003531 ORTHO05D004354 1.3e-31 139.4 81 66.7
Migut.N01608 Erythranthe guttata HOM05D003531 ORTHO05D004354 1.3e-31 139.4 81 66.7
Oeu063180.2 Olea europaea HOM05D003531 ORTHO05D004354 1.3e-31 139.4 81 69.1
DCAR_029680 Daucus carota HOM05D003531 ORTHO05D004354 1.6e-31 139.0 81 67.9
MSTRG.5029 Avicennia marina HOM05D003531 ORTHO05D004354 2.1e-31 138.7 81 67.9
PGR031G1295 Punica granatum HOM05D003531 ORTHO05D004354 2.1e-31 138.7 81 64.2
Sc23g0005960 Simmondsia chinensis HOM05D003531 ORTHO05D004354 2.1e-31 138.7 81 66.7
Actinidia20660 Actinidia chinensis HOM05D003531 ORTHO05D004354 2.8e-31 138.3 81 65.4
C06p37170 Brassica napus HOM05D003531 ORTHO05D004354 2.8e-31 138.3 84 77.4
GSVIVG01032131001 Vitis vinifera HOM05D003531 ORTHO05D004354 3.7e-31 137.9 81 66.7
Sabra09G0043900 Salix brachista HOM05D003531 ORTHO05D004354 4.8e-31 137.5 81 65.4
Rhsim01G0128500 Rhododendron simsii HOM05D003531 ORTHO05D004354 8.1e-31 136.7 81 65.4
vmacro21192 Vaccinium macrocarpon HOM05D003531 ORTHO05D004354 8.1e-31 136.7 81 65.4
PSO339G4096 Papaver somniferum HOM05D003531 ORTHO05D004354 1.1e-30 136.3 81 65.4
PSO384G4091 Papaver somniferum HOM05D003531 ORTHO05D004354 1.4e-30 136.0 81 65.4
Hund19803 Selenicereus undatus HOM05D003531 ORTHO05D004354 1.4e-30 136.0 81 65.4
AUR62023077 Chenopodium quinoa HOM05D003531 ORTHO05D004354 1.8e-30 135.6 81 65.4
Gohir.A08G028300 Gossypium hirsutum HOM05D003531 ORTHO05D004354 4.0e-30 134.4 80 66.2
HanXRQChr17g0563011 Helianthus annuus HOM05D003531 ORTHO05D004354 5.3e-30 134.0 81 69.1
Solyc01g087410.4 Solanum lycopersicum HOM05D003531 ORTHO05D004354 6.9e-30 133.7 83 65.1
SGA_v2.0_scaffold24G10668 Striga asiatica HOM05D003531 ORTHO05D004354 9.0e-30 133.3 81 64.2
ATR0332G091 Amborella trichopoda HOM05D003531 ORTHO05D004354 1.2e-29 132.9 83 68.7
BcaC09g47972 Brassica carinata HOM05D003531 ORTHO05D004354 1.5e-29 132.5 83 74.7
BolC1t05508H Brassica oleracea HOM05D003531 ORTHO05D004354 1.5e-29 132.5 83 74.7
BraA01t04348Z Brassica rapa HOM05D003531 ORTHO05D004354 1.5e-29 132.5 83 74.7
HanXRQChr09g0251321 Helianthus annuus HOM05D003531 ORTHO05D004354 1.5e-29 132.5 81 65.4
MD07G1013100 Malus domestica HOM05D003531 ORTHO05D004354 1.5e-29 132.5 81 65.4
Prupe.2G016600 Prunus persica HOM05D003531 ORTHO05D004354 1.5e-29 132.5 81 65.4
FAN01G0774 Fragaria x ananassa HOM05D003531 ORTHO05D004354 2.0e-29 132.1 105 54.3
Gohir.D08G039066 Gossypium hirsutum HOM05D003531 ORTHO05D004354 2.0e-29 132.1 80 65.0
CDE05G0662 Ceratophyllum demersum HOM05D003531 ORTHO05D004354 2.6e-29 131.7 83 66.3
Glyma.09G228600 Glycine max HOM05D003531 ORTHO05D004354 2.6e-29 131.7 80 62.5
Glyma.12G007900 Glycine max HOM05D003531 ORTHO05D004354 2.6e-29 131.7 80 62.5
Sopen01g034460 Solanum pennellii HOM05D003531 ORTHO05D004354 5.8e-29 130.6 83 62.7
CDE05G3403 Ceratophyllum demersum HOM05D003531 ORTHO05D004354 7.6e-29 130.2 83 65.1
Gorai.004G037700 Gossypium raimondii HOM05D003531 ORTHO05D004354 9.9e-29 129.8 80 63.8
Os12g0527800 Oryza sativa ssp. japonica HOM05D003531 ORTHO05D004354 9.9e-29 129.8 81 61.7
Sopen01g034440 Solanum pennellii HOM05D003531 ORTHO05D004354 9.9e-29 129.8 83 63.9
AL3G19400 Arabidopsis lyrata HOM05D003531 ORTHO05D004354 1.3e-28 129.4 83 71.1
Phvul.011G010000 Phaseolus vulgaris HOM05D003531 ORTHO05D004354 1.3e-28 129.4 80 61.2
VMungo1127G0476 Vigna mungo HOM05D003531 ORTHO05D004354 1.3e-28 129.4 80 61.2
AT3G08020 Arabidopsis thaliana HOM05D003531 ORTHO05D004354 4.9e-28 127.5 83 69.9
Carub.0003s0760 Capsella rubella HOM05D003531 ORTHO05D004354 4.9e-28 127.5 83 69.9
CARHR082750 Cardamine hirsuta HOM05D003531 ORTHO05D004354 4.9e-28 127.5 83 71.1
FAN06G4268 Fragaria x ananassa HOM05D003531 ORTHO05D004354 6.4e-28 127.1 118 48.3
FAN10G4005 Fragaria x ananassa HOM05D003531 ORTHO05D004354 6.4e-28 127.1 118 48.3
RcHm_v2.0_Chr1g0316671 Rosa chinensis HOM05D003531 ORTHO05D004354 8.4e-28 126.7 81 65.4
MD02G1308700 Malus domestica HOM05D003531 ORTHO05D004354 1.1e-27 126.3 81 64.2
Hund21485 Selenicereus undatus HOM05D003531 ORTHO05D004354 1.1e-27 126.3 81 61.7
HPP92_009589 Vanilla planifolia HOM05D003531 ORTHO05D004354 1.1e-27 126.3 81 59.3
Aqoxy2G00168 Aquilegia oxysepala HOM05D003531 ORTHO05D004354 1.4e-27 125.9 81 63.0
Aqoxy2G00174 Aquilegia oxysepala HOM05D003531 ORTHO05D004354 1.4e-27 125.9 81 63.0
BcaC06g36048 Brassica carinata HOM05D003531 ORTHO05D004354 2.4e-27 125.2 59 88.1
MBI02_g23150_MAGBIO Magnolia biondii HOM05D003531 ORTHO05D004354 3.2e-27 124.8 91 56.0
Potri.009G059700 Populus trichocarpa HOM05D003531 ORTHO05D004354 3.2e-27 124.8 81 60.5
AT3G52100 Arabidopsis thaliana HOM05D003531 ORTHO05D004354 5.5e-27 124.0 81 65.4
Potri.009G059500 Populus trichocarpa HOM05D003531 ORTHO05D004354 9.3e-27 123.2 80 60.0
AL5G32650 Arabidopsis lyrata HOM05D003531 ORTHO05D004354 1.2e-26 122.9 81 64.2
BcaC01g03307 Brassica carinata HOM05D000305 ORTHO05D000065 2.1e-26 122.1 74 74.3
Solyc01g087420.4 Solanum lycopersicum HOM05D003531 ORTHO05D004354 4.6e-26 120.9 67 68.7
Sopen01g034360 Solanum pennellii HOM05D003531 ORTHO05D004354 4.6e-26 120.9 67 68.7
Solyc01g087320.3 Solanum lycopersicum HOM05D003531 ORTHO05D004354 1.3e-25 119.4 83 59.0
Carub.0005s1842 Capsella rubella HOM05D003531 ORTHO05D004354 1.8e-25 119.0 81 60.5
C03p53830 Brassica napus HOM05D000305 ORTHO05D000065 2.3e-25 118.6 59 84.7
TWI09G1532 Tripterygium wilfordii HOM05D003531 ORTHO05D004354 2.3e-25 118.6 81 61.7
BraA03t13971Z Brassica rapa HOM05D003531 ORTHO05D004354 6.7e-25 117.1 81 60.5
CARHR161810 Cardamine hirsuta HOM05D003531 ORTHO05D004354 8.7e-25 116.7 81 61.7
Sopen01g034350 Solanum pennellii HOM05D003531 ORTHO05D004354 8.7e-25 116.7 83 57.8
TPR.G3645 Trifolium pratense HOM05D003531 ORTHO05D004354 8.7e-25 116.7 69 65.2
arahy.Tifrunner.gnm1.ann1.2BQ2P0 Arachis hypogaea HOM05D003531 ORTHO05D004354 1.5e-24 115.9 80 60.0
arahy.Tifrunner.gnm1.ann1.T4LWN5 Arachis hypogaea HOM05D003531 ORTHO05D004354 1.5e-24 115.9 80 60.0
Nitab4.5_0002918g0090 Nicotiana tabacum HOM05D003531 ORTHO05D004833 1.9e-24 115.5 59 72.9
Lalb_Chr25g0282961 Lupinus albus HOM05D003531 ORTHO05D004354 2.5e-24 115.2 80 58.8
Lalb_Chr01g0000391 Lupinus albus HOM05D003531 ORTHO05D004354 7.4e-24 113.6 80 57.5
Lj3g0012564 Lotus japonicus HOM05D003531 ORTHO05D004354 9.6e-24 113.2 80 58.8
Lj3g0024838 Lotus japonicus HOM05D003531 ORTHO05D004354 9.6e-24 113.2 80 58.8
Peaxi162Scf00953g00513 Petunia axillaris HOM05D003531 ORTHO05D004354 2.8e-23 111.7 58 72.4
Psat0s1245g0040 Pisum sativum HOM05D003531 ORTHO05D004354 3.7e-23 111.3 80 56.2
Ca_19577_v3 Cicer arietinum L. HOM05D003531 ORTHO05D004354 8.2e-23 110.2 80 56.2
AUR62009395 Chenopodium quinoa HOM05D003531 ORTHO05D004354 1.4e-22 109.4 59 69.5
Lalb_Chr19g0140301 Lupinus albus HOM05D003531 ORTHO05D004354 1.4e-22 109.4 80 56.2
Medtr4g037745 Medicago truncatula HOM05D003531 ORTHO05D004354 1.4e-22 109.4 80 55.0
Pp3c8_14490 Physcomitrium patens HOM05D003531 ORTHO05D004354 1.4e-22 109.4 82 56.1
A03p48680 Brassica napus HOM05D003531 ORTHO05D004354 1.8e-22 109.0 104 49.0
Lsat_1_v5_gn_1_106281 Lactuca sativa HOM05D003531 ORTHO05D004354 3.1e-22 108.2 83 56.6
arahy.Tifrunner.gnm1.ann1.L35I2V Arachis hypogaea HOM05D003531 ORTHO05D004354 5.3e-22 107.5 70 62.9
arahy.Tifrunner.gnm1.ann1.V60VE2 Arachis hypogaea HOM05D003531 ORTHO05D004354 5.3e-22 107.5 70 62.9
ECA248G0343 Erigeron canadensis HOM05D003531 ORTHO05D004354 5.3e-22 107.5 81 56.8
BolC8t50353H Brassica oleracea HOM05D003531 ORTHO05D004354 1.2e-21 106.3 81 56.8
A09p45150 Brassica napus HOM05D003531 ORTHO05D004354 2.0e-21 105.5 81 55.6
C08p27360 Brassica napus HOM05D003531 ORTHO05D004354 2.0e-21 105.5 81 55.6
BraA09t39978Z Brassica rapa HOM05D003531 ORTHO05D004354 2.0e-21 105.5 81 55.6
Thhalv10010234m.g Eutrema salsugineum HOM05D003531 ORTHO05D004354 4.5e-21 104.4 81 54.3
BcaB01g00446 Brassica carinata HOM05D003531 ORTHO05D004354 7.6e-21 103.6 81 54.3
BcaC06g33024 Brassica carinata HOM05D003531 ORTHO05D004354 7.6e-21 103.6 81 54.3
Sp5g10200 Schrenkiella parvula HOM05D003531 ORTHO05D004354 2.9e-20 101.7 81 54.3
Lj9C634G4 Lonicera japonica HOM05D003531 ORTHO05D004354 3.8e-20 101.3 81 55.6
Aa31LG10G7170 Aethionema arabicum HOM05D003531 ORTHO05D004354 3.2e-19 98.2 81 53.1
BcaC06g33381 Brassica carinata HOM05D003531 ORTHO05D004354 5.5e-19 97.4 81 53.1
C07p46790 Brassica napus HOM05D003531 ORTHO05D004354 5.5e-19 97.4 81 53.1
BolC7t45196H Brassica oleracea HOM05D003531 ORTHO05D004354 5.5e-19 97.4 81 53.1
ECA234G4456 Erigeron canadensis HOM05D003531 ORTHO05D004354 1.6e-18 95.9 81 50.6
BcaB05g24179 Brassica carinata HOM05D003531 ORTHO05D004354 2.1e-18 95.5 57 68.4
Solyc01g087390.2 Solanum lycopersicum HOM05D003531 ORTHO05D004354 2.1e-18 95.5 53 66.0
BcaC03g16378 Brassica carinata HOM05D003531 ORTHO05D004354 3.5e-18 94.7 42 97.6
BcaB01g02046 Brassica carinata HOM05D003531 ORTHO05D015800 7.9e-18 93.6 57 66.7
AagrBONN_evm.TU.Sc2ySwM_344.3832 Anthoceros agrestis HOM05D003531 ORTHO05D004354 1.3e-17 92.8 82 46.3
BcaC09g49888 Brassica carinata HOM05D003531 ORTHO05D015800 6.7e-17 90.5 57 64.9
BolC1t03102H Brassica oleracea HOM05D003531 ORTHO05D015800 6.7e-17 90.5 57 64.9
Mapoly0014s0141 Marchantia polymorpha HOM05D003531 ORTHO05D004354 3.3e-16 88.2 82 46.3
SMO203G0227 Selaginella moellendorffii HOM05D003531 ORTHO05D004354 4.3e-16 87.8 81 44.4
COL.COLO4_04865 Corchorus olitorius HOM05D003531 ORTHO05D004354 1.1e-14 83.2 41 82.9
BcaC06g33023 Brassica carinata HOM05D003531 ORTHO05D004354 4.1e-14 81.3 70 51.4
BcaNung06091 Brassica carinata HOM05D003531 ORTHO05D004354 2.0e-13 79.0 107 39.3
MBI04_g44436_MAGBIO Magnolia biondii HOM05D003531 ORTHO05D004354 2.9e-12 75.1 52 61.5
BcaC08g45915 Brassica carinata HOM05D003531 ORTHO05D004354 3.8e-12 74.7 34 94.1
C01p31670 Brassica napus HOM05D003513 ORTHO05D015800 1.1e-11 73.2 82 43.9


User provided reference genes

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