Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p41170 Brassica napus HOM05D008309 ORTHO05D010308 1.7e-185 652.5 326 100.0
BraA06t25453Z Brassica rapa HOM05D008309 ORTHO05D010308 2.4e-123 446.0 352 67.0
C04p50470 Brassica napus HOM05D008309 ORTHO05D010308 2.6e-117 426.0 352 65.3
BraA10t44443Z Brassica rapa HOM05D008309 ORTHO05D010308 5.2e-102 375.2 352 56.0
BolC2t10136H Brassica oleracea HOM05D008309 ORTHO05D010308 9.8e-101 370.9 329 61.4
BolC8t50055H Brassica oleracea HOM05D008309 ORTHO05D010308 2.9e-100 369.4 352 54.8
BraA04t17652Z Brassica rapa HOM05D008309 ORTHO05D010308 2.9e-100 369.4 352 54.8
BolC3t19893H Brassica oleracea HOM05D008309 ORTHO05D010308 2.4e-99 366.3 349 55.0
C01p25750 Brassica napus HOM05D008309 ORTHO05D010308 1.5e-96 357.1 399 55.4
A09p47040 Brassica napus HOM05D008309 ORTHO05D010308 8.3e-92 341.3 300 62.0
BolC4t26644H Brassica oleracea HOM05D008309 ORTHO05D010308 1.2e-90 337.4 243 72.0
BraA09t40169Z Brassica rapa HOM05D008309 ORTHO05D010308 1.6e-87 327.0 231 72.3
AT1G40087 Arabidopsis thaliana HOM05D008309 ORTHO05D010308 6.2e-87 325.1 353 49.9
BolC1t02525H Brassica oleracea HOM05D008309 ORTHO05D010308 7.6e-85 318.2 358 55.3
AT3G30200 Arabidopsis thaliana HOM05D008309 ORTHO05D010308 1.1e-83 314.3 306 53.6
A04p20790 Brassica napus HOM05D008309 ORTHO05D010308 5.4e-83 312.0 352 48.9
C07p56660 Brassica napus HOM05D008309 ORTHO05D010308 8.7e-81 304.7 328 53.4
BolC7t46146H Brassica oleracea HOM05D008309 ORTHO05D010308 1.1e-80 304.3 329 53.2
BolC2t08113H Brassica oleracea HOM05D008309 ORTHO05D010308 1.5e-77 293.9 242 62.0
BolC9t56521H Brassica oleracea HOM05D008309 ORTHO05D010308 6.0e-74 282.0 232 64.7
A03p63400 Brassica napus HOM05D008309 ORTHO05D010308 1.3e-73 280.8 242 62.8
BraA04t17824Z Brassica rapa HOM05D008309 ORTHO05D010308 9.0e-70 268.1 270 58.1
BolSC30t60633H Brassica oleracea HOM05D008309 ORTHO05D010308 2.9e-68 263.1 162 82.1
A09p31580 Brassica napus HOM05D008309 ORTHO05D010308 4.9e-68 262.3 162 77.2
C09p36910 Brassica napus HOM05D008309 ORTHO05D010308 1.3e-65 254.2 168 75.6
A09p53580 Brassica napus HOM05D008309 ORTHO05D010308 1.1e-64 251.1 352 42.3
C02p19790 Brassica napus HOM05D008309 ORTHO05D010308 1.8e-62 243.8 286 47.9
C05p49520 Brassica napus HOM05D008309 ORTHO05D010308 8.4e-60 235.0 307 45.0
C03p39230 Brassica napus HOM05D008309 ORTHO05D010308 5.5e-51 205.7 283 42.8
BolC8t48093H Brassica oleracea HOM05D008309 ORTHO05D010308 3.7e-47 193.0 130 73.8
AL1G63190 Arabidopsis lyrata HOM05D008309 ORTHO05D010308 1.9e-35 154.1 202 39.6
A05p38910 Brassica napus HOM05D008309 ORTHO05D010308 2.5e-35 153.7 123 60.2
C04p48940 Brassica napus HOM05D008309 ORTHO05D010308 7.2e-35 152.1 149 56.4
C01p42640 Brassica napus HOM05D008309 ORTHO05D010308 7.0e-30 135.6 115 58.3
A01p27270 Brassica napus HOM05D008309 ORTHO05D010308 1.6e-26 124.4 248 34.7
AL1G66070 Arabidopsis lyrata HOM05D000107 ORTHO05D000062 3.6e-26 123.2 244 31.6
BcaC06g31080 Brassica carinata HOM05D008309 ORTHO05D010308 1.0e-20 105.1 160 39.4
A09p31570 Brassica napus HOM05D008309 ORTHO05D010308 1.3e-20 104.8 62 72.6
BraSC39t46182Z Brassica rapa HOM05D008309 ORTHO05D010308 1.2e-18 98.2 62 67.7
Sopen11g015860 Solanum pennellii HOM05D002954 ORTHO05D003353 2.3e-17 94.0 181 30.9
arahy.Tifrunner.gnm1.ann1.NE3TTV Arachis hypogaea HOM05D002954 ORTHO05D003353 3.3e-16 90.1 160 31.9
Lj6g0018229 Lotus japonicus HOM05D002954 ORTHO05D003353 7.5e-16 89.0 158 32.9
Nitab4.5_0002373g0020 Nicotiana tabacum HOM05D002954 ORTHO05D003353 1.3e-15 88.2 168 32.7
arahy.Tifrunner.gnm1.ann1.R7YZCH Arachis hypogaea HOM05D002954 ORTHO05D003353 2.8e-15 87.0 145 35.9
C06p11900 Brassica napus HOM05D008309 ORTHO05D010308 3.7e-15 86.7 74 56.8
BolC6t36323H Brassica oleracea HOM05D008309 ORTHO05D010308 6.3e-15 85.9 71 57.7
BolC4t26475H Brassica oleracea HOM05D008309 ORTHO05D010308 1.1e-14 85.1 149 38.9
Lj5g0000508 Lotus japonicus HOM05D002954 ORTHO05D003353 1.1e-14 85.1 239 25.5
Psat5g237440 Pisum sativum HOM05D002954 ORTHO05D003353 7.0e-14 82.4 164 28.0
Lj4g0009760 Lotus japonicus HOM05D002954 ORTHO05D003353 9.1e-14 82.0 241 28.2
Nitab4.5_0006180g0040 Nicotiana tabacum HOM05D002954 ORTHO05D003353 9.1e-14 82.0 137 32.8
BcaC06g32085 Brassica carinata HOM05D008309 ORTHO05D010308 2.0e-13 80.9 67 56.7
Solyc11g044937.1 Solanum lycopersicum HOM05D002954 ORTHO05D003353 2.7e-13 80.5 176 31.2
Hma1.2p1_0174F.1_g076560 Hydrangea macrophylla HOM05D001309 ORTHO05D000385 4.5e-13 79.7 220 27.3
Nitab4.5_0000002g0110 Nicotiana tabacum HOM05D002954 ORTHO05D003353 1.0e-12 78.6 173 30.6
Phvul.L001985 Phaseolus vulgaris HOM05D002954 ORTHO05D003353 1.3e-12 78.2 187 31.0
arahy.Tifrunner.gnm1.ann1.5TT13I Arachis hypogaea HOM05D002954 ORTHO05D003353 1.7e-12 77.8 160 28.8
arahy.Tifrunner.gnm1.ann1.DXNF3X Arachis hypogaea HOM05D002954 ORTHO05D003353 2.2e-12 77.4 250 26.0
HanXRQChr03g0064971 Helianthus annuus HOM05D001309 ORTHO05D005970 6.5e-12 75.9 187 28.3
TWI34G1252 Tripterygium wilfordii HOM05D001309 ORTHO05D000385 6.5e-12 75.9 228 29.8
Glyma.20G055700 Glycine max HOM05D002954 ORTHO05D003353 8.5e-12 75.5 160 28.8
Lj2g0001970 Lotus japonicus HOM05D003938 ORTHO05D004759 1.1e-11 75.1 137 34.3
arahy.Tifrunner.gnm1.ann1.9YTX13 Arachis hypogaea HOM05D002954 ORTHO05D003353 1.5e-11 74.7 161 31.1
Peaxi162Scf00005g00443 Petunia axillaris HOM05D002954 ORTHO05D003353 1.9e-11 74.3 161 29.8
Nitab4.5_0000229g0050 Nicotiana tabacum HOM05D002954 ORTHO05D003353 2.5e-11 73.9 146 32.2
Nitab4.5_0002430g0040 Nicotiana tabacum HOM05D002954 ORTHO05D003353 2.5e-11 73.9 207 27.5
Phvul.003G087300 Phaseolus vulgaris HOM05D002954 ORTHO05D003353 5.5e-11 72.8 176 31.2
Oeu023404.2 Olea europaea HOM05D001309 ORTHO05D005970 7.2e-11 72.4 190 30.5
CSS0035442 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D005970 1.2e-10 71.6 189 27.5
Solyc01g010405.1 Solanum lycopersicum HOM05D002954 ORTHO05D003353 1.2e-10 71.6 114 35.1
AL1G48750 Arabidopsis lyrata HOM05D039413 ORTHO05D010308 1.6e-10 71.2 166 32.5
Nitab4.5_0007595g0020 Nicotiana tabacum HOM05D002954 ORTHO05D003353 1.6e-10 71.2 208 27.4
Nitab4.5_0004985g0040 Nicotiana tabacum HOM05D002954 ORTHO05D003353 2.7e-10 70.5 122 33.6
TWI38G2136 Tripterygium wilfordii HOM05D003120 ORTHO05D000669 2.7e-10 70.5 213 27.2
TWI73G0990 Tripterygium wilfordii HOM05D003120 ORTHO05D000669 2.7e-10 70.5 189 27.0
MBI09_g33431_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 3.6e-10 70.1 164 29.9
CSS0006329 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 4.7e-10 69.7 192 27.6
Nn1g01837 Nelumbo nucifera HOM05D006525 ORTHO05D007845 4.7e-10 69.7 188 28.2
Psat5g178080 Pisum sativum HOM05D002954 ORTHO05D003353 6.1e-10 69.3 99 37.4
Lsat_1_v5_gn_9_120520 Lactuca sativa HOM05D001309 ORTHO05D005970 8.0e-10 68.9 189 28.0
Psat3g063200 Pisum sativum HOM05D002954 ORTHO05D003353 8.0e-10 68.9 135 29.6
A01p29020 Brassica napus HOM05D008309 ORTHO05D010308 1.0e-09 68.6 285 25.6
arahy.Tifrunner.gnm1.ann1.0Q01G3 Arachis hypogaea HOM05D002954 ORTHO05D003353 1.4e-09 68.2 138 29.7
Rhsim11G0122900 Rhododendron simsii HOM05D001309 ORTHO05D005970 1.4e-09 68.2 190 26.8
A09p43070 Brassica napus HOM05D008309 ORTHO05D010308 2.3e-09 67.4 65 46.2
Sopen04g020530 Solanum pennellii HOM05D002954 ORTHO05D003353 2.3e-09 67.4 123 35.0
Sopen09g020910 Solanum pennellii HOM05D002954 ORTHO05D003353 5.2e-09 66.2 98 38.8
Actinidia01605 Actinidia chinensis HOM05D001309 ORTHO05D005970 6.8e-09 65.9 190 26.8
BraA01t02998Z Brassica rapa HOM05D008309 ORTHO05D010308 6.8e-09 65.9 285 25.6
Actinidia00177 Actinidia chinensis HOM05D001309 ORTHO05D000385 8.8e-09 65.5 190 24.7
TWI75G0500 Tripterygium wilfordii HOM05D001309 ORTHO05D000385 8.8e-09 65.5 195 27.7
Dinv19412 Davidia involucrata HOM05D001309 ORTHO05D005970 2.0e-08 64.3 188 27.1
Peaxi162Scf00624g00076 Petunia axillaris HOM05D002954 ORTHO05D003353 2.0e-08 64.3 174 27.0
TAR375G1128 Trochodendron aralioides HOM05D001309 ORTHO05D000385 2.0e-08 64.3 190 26.8
Nitab4.5_0002100g0170 Nicotiana tabacum HOM05D002954 ORTHO05D003353 2.6e-08 63.9 113 30.1
Nitab4.5_0008635g0020 Nicotiana tabacum HOM05D001309 ORTHO05D000385 4.4e-08 63.2 128 32.0
Lj1g0022399 Lotus japonicus HOM05D000107 ORTHO05D000062 5.7e-08 62.8 125 32.0
arahy.Tifrunner.gnm1.ann1.QKP2RW Arachis hypogaea HOM05D002954 ORTHO05D003353 7.5e-08 62.4 159 27.7
Sopen09g017170 Solanum pennellii HOM05D008041 ORTHO05D000385 7.5e-08 62.4 162 27.8
arahy.Tifrunner.gnm1.ann1.N8CY10 Arachis hypogaea HOM05D009662 ORTHO05D003353 1.7e-07 61.2 103 33.0
arahy.Tifrunner.gnm1.ann1.ZY1J0Y Arachis hypogaea HOM05D002954 ORTHO05D003353 2.2e-07 60.8 109 33.0
TPR.G32610 Trifolium pratense HOM05D002954 ORTHO05D003353 2.2e-07 60.8 84 36.9
Peaxi162Scf00093g00015 Petunia axillaris HOM05D002954 ORTHO05D010308 2.8e-07 60.5 202 26.7
Actinidia39002 Actinidia chinensis HOM05D001309 ORTHO05D000385 3.7e-07 60.1 191 26.2
QL05p002086 Quercus lobata HOM05D008595 ORTHO05D000385 3.7e-07 60.1 127 28.3
Psat0s2772g0080 Pisum sativum HOM05D002954 ORTHO05D003353 6.3e-07 59.3 123 31.7
Lj2g0004380 Lotus japonicus HOM05D005022 ORTHO05D002200 1.8e-06 57.8 100 33.0
Nitab4.5_0004792g0010 Nicotiana tabacum HOM05D002954 ORTHO05D003353 2.4e-06 57.4 121 28.9
A09p43080 Brassica napus HOM05D008309 ORTHO05D010308 3.1e-06 57.0 52 53.8
Lsat_1_v5_gn_4_141161 Lactuca sativa HOM05D001309 ORTHO05D000385 3.1e-06 57.0 170 25.9
PSO541G0763 Papaver somniferum HOM05D001309 ORTHO05D000385 3.1e-06 57.0 188 28.7
Phvul.011G145200 Phaseolus vulgaris HOM05D002954 ORTHO05D003353 3.1e-06 57.0 161 27.3
arahy.Tifrunner.gnm1.ann1.VWW6CB Arachis hypogaea HOM05D002954 ORTHO05D003353 4.1e-06 56.6 210 23.3
arahy.Tifrunner.gnm1.ann1.B3S8NN Arachis hypogaea HOM05D002954 ORTHO05D003353 5.4e-06 56.2 109 31.2
arahy.Tifrunner.gnm1.ann1.FX9Q6E Arachis hypogaea HOM05D002954 ORTHO05D003353 7.0e-06 55.8 95 32.6
Lj3g0027022 Lotus japonicus HOM05D004615 ORTHO05D000385 7.0e-06 55.8 148 29.1


User provided reference genes

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