Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p34830 Brassica napus HOM05D005307 ORTHO05D006695 1.5e-40 169.1 85 100.0
BraA02t07152Z Brassica rapa HOM05D005307 ORTHO05D006695 2.1e-31 138.7 83 88.0
BcaB06g26551 Brassica carinata HOM05D005307 ORTHO05D006695 2.1e-26 122.1 116 63.8
BcaC06g35584 Brassica carinata HOM05D005307 ORTHO05D006695 1.0e-25 119.8 116 62.9
C07p13250 Brassica napus HOM05D005307 ORTHO05D006695 1.0e-25 119.8 116 62.9
BolC7t41817H Brassica oleracea HOM05D005307 ORTHO05D006695 1.0e-25 119.8 116 62.9
BolC2t09502H Brassica oleracea HOM05D005307 ORTHO05D006695 3.0e-25 118.2 100 69.0
A07p08510 Brassica napus HOM05D005307 ORTHO05D006695 5.1e-25 117.5 116 62.1
BraA07t28636Z Brassica rapa HOM05D005307 ORTHO05D006695 5.1e-25 117.5 116 62.1
Thhalv10002398m.g Eutrema salsugineum HOM05D005307 ORTHO05D006695 8.2e-23 110.2 116 57.8
Sp3g21580 Schrenkiella parvula HOM05D005307 ORTHO05D006695 1.1e-22 109.8 115 58.3
AT3G23900 Arabidopsis thaliana HOM05D005307 ORTHO05D006695 2.6e-21 105.1 117 54.7
AL3G38890 Arabidopsis lyrata HOM05D005307 ORTHO05D006695 5.8e-21 104.0 113 56.6
CARHR099860 Cardamine hirsuta HOM05D005307 ORTHO05D006695 1.3e-20 102.8 120 54.2
Carub.0003s2420 Capsella rubella HOM05D005307 ORTHO05D006695 1.7e-20 102.4 112 56.2
Aa31LG8G10470 Aethionema arabicum HOM05D005307 ORTHO05D006695 3.2e-19 98.2 118 55.1
Sabra16G0201900 Salix brachista HOM05D005307 ORTHO05D006695 3.0e-17 91.7 101 52.5
HanXRQChr01g0022201 Helianthus annuus HOM05D005307 ORTHO05D006695 3.9e-17 91.3 97 54.6
THA.LOC104808701 Tarenaya hassleriana HOM05D005307 ORTHO05D006695 5.1e-17 90.9 111 49.5
Lsat_1_v5_gn_1_73301 Lactuca sativa HOM05D005307 ORTHO05D006695 1.1e-16 89.7 97 53.6
Potri.001G319000 Populus trichocarpa HOM05D005307 ORTHO05D006695 1.1e-16 89.7 102 52.0
Ciclev10004448m.g Citrus clementina HOM05D005307 ORTHO05D006695 1.9e-16 89.0 104 52.9
Manes.03G144900 Manihot esculenta HOM05D005307 ORTHO05D006695 1.9e-16 89.0 97 54.6
ECA248G0158 Erigeron canadensis HOM05D005307 ORTHO05D006695 3.3e-16 88.2 99 53.5
Sabra17G0051900 Salix brachista HOM05D005307 ORTHO05D006695 4.3e-16 87.8 95 53.7
DCAR_005485 Daucus carota HOM05D005307 ORTHO05D006695 5.7e-16 87.4 98 52.0
Phvul.003G050400 Phaseolus vulgaris HOM05D005307 ORTHO05D006695 5.7e-16 87.4 105 50.5
VMungo0251G3181 Vigna mungo HOM05D005307 ORTHO05D006695 5.7e-16 87.4 105 50.5
Cfa014955 Carpinus fangiana HOM05D005307 ORTHO05D006695 7.4e-16 87.0 99 52.5
Ca_17978_v3 Cicer arietinum L. HOM05D005307 ORTHO05D006695 7.4e-16 87.0 99 53.5
Haze_11645 Corylus avellana HOM05D005307 ORTHO05D006695 7.4e-16 87.0 99 52.5
Potri.017G058300 Populus trichocarpa HOM05D005307 ORTHO05D006695 7.4e-16 87.0 101 51.5
Prupe.1G163200 Prunus persica HOM05D005307 ORTHO05D006695 7.4e-16 87.0 99 54.5
PGSC0003DMG400024356 Solanum tuberosum HOM05D005307 ORTHO05D006695 9.7e-16 86.7 104 51.9
ClCG05G003160 Citrullus lanatus HOM05D005307 ORTHO05D006695 1.3e-15 86.3 98 52.0
FAN17G0194 Fragaria x ananassa HOM05D005307 ORTHO05D006695 1.3e-15 86.3 100 52.0
Actinidia35846 Actinidia chinensis HOM05D005307 ORTHO05D006695 1.6e-15 85.9 97 53.6
FvH4_4g13380 Fragaria vesca HOM05D005307 ORTHO05D006695 1.6e-15 85.9 100 54.0
FAN07G1190 Fragaria x ananassa HOM05D005307 ORTHO05D006695 1.6e-15 85.9 100 54.0
FAN12G2903 Fragaria x ananassa HOM05D005307 ORTHO05D006695 1.6e-15 85.9 100 54.0
FAN22G0006 Fragaria x ananassa HOM05D005307 ORTHO05D006695 1.6e-15 85.9 100 54.0
Sed0024269 Sechium edule HOM05D005307 ORTHO05D006695 1.6e-15 85.9 98 51.0
TPR.G11920 Trifolium pratense HOM05D005307 ORTHO05D006695 1.6e-15 85.9 99 54.5
Dinv38181 Davidia involucrata HOM05D005307 ORTHO05D006695 2.2e-15 85.5 96 52.1
Aqoxy2G03944 Aquilegia oxysepala HOM05D005307 ORTHO05D006695 2.8e-15 85.1 104 51.0
CSS0004168 Camellia sinensis var. sinensis HOM05D005307 ORTHO05D006695 2.8e-15 85.1 97 51.5
arahy.Tifrunner.gnm1.ann1.C718TQ Arachis hypogaea HOM05D005307 ORTHO05D006695 3.7e-15 84.7 104 51.0
arahy.Tifrunner.gnm1.ann1.GBN5SF Arachis hypogaea HOM05D005307 ORTHO05D006695 3.7e-15 84.7 104 51.0
MD04G1016500 Malus domestica HOM05D005307 ORTHO05D006695 3.7e-15 84.7 99 54.5
SHI06461 Sapria himalayana HOM05D005307 ORTHO05D006695 3.7e-15 84.7 97 52.6
MELO3C006297.2 Cucumis melo HOM05D005307 ORTHO05D006695 4.8e-15 84.3 98 51.0
CsaV3_3G010790 Cucumis sativus L. HOM05D005307 ORTHO05D006695 4.8e-15 84.3 98 51.0
Glyma.08G109600 Glycine max HOM05D005307 ORTHO05D006695 4.8e-15 84.3 113 46.9
Lj3C779T0 Lonicera japonica HOM05D005307 ORTHO05D006695 4.8e-15 84.3 97 51.5
Mapoly0002s0028 Marchantia polymorpha HOM05D005307 ORTHO05D006695 4.8e-15 84.3 97 48.5
Nn1g08214 Nelumbo nucifera HOM05D005307 ORTHO05D006695 4.8e-15 84.3 98 52.0
Solyc09g092250.3 Solanum lycopersicum HOM05D005307 ORTHO05D006695 6.3e-15 84.0 104 51.0
Sopen09g035180 Solanum pennellii HOM05D005307 ORTHO05D006695 6.3e-15 84.0 104 51.0
Sc13g0000330 Simmondsia chinensis HOM05D005307 ORTHO05D006695 8.2e-15 83.6 96 51.0
Medtr8g081640 Medicago truncatula HOM05D005307 ORTHO05D006695 1.1e-14 83.2 99 52.5
Nitab4.5_0002223g0040 Nicotiana tabacum HOM05D005307 ORTHO05D006695 1.1e-14 83.2 108 47.2
Peaxi162Scf00047g00141 Petunia axillaris HOM05D005307 ORTHO05D006695 1.1e-14 83.2 108 49.1
Hund24403 Selenicereus undatus HOM05D005307 ORTHO05D006695 1.1e-14 83.2 99 49.5
Glyma.05G152900 Glycine max HOM05D005307 ORTHO05D006695 1.4e-14 82.8 107 47.7
Thecc.04G196200 Theobroma cacao HOM05D005307 ORTHO05D006695 1.4e-14 82.8 104 50.0
COL.COLO4_20217 Corchorus olitorius HOM05D005307 ORTHO05D006695 1.8e-14 82.4 104 50.0
Nitab4.5_0000697g0080 Nicotiana tabacum HOM05D005307 ORTHO05D006695 1.8e-14 82.4 109 46.8
QL06p026221 Quercus lobata HOM05D005307 ORTHO05D006695 1.8e-14 82.4 110 48.2
RcHm_v2.0_Chr4g0413751 Rosa chinensis HOM05D005307 ORTHO05D006695 1.8e-14 82.4 101 50.5
CDE05G3407 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 2.4e-14 82.0 102 50.0
Sed0018547 Sechium edule HOM05D005307 ORTHO05D006695 2.4e-14 82.0 102 48.0
vmacro00443 Vaccinium macrocarpon HOM05D005307 ORTHO05D006695 2.4e-14 82.0 98 51.0
HPP92_024208 Vanilla planifolia HOM05D005307 ORTHO05D006695 2.4e-14 82.0 103 48.5
Gohir.D02G023000 Gossypium hirsutum HOM05D005307 ORTHO05D006695 3.1e-14 81.6 104 50.0
Gorai.005G028400 Gossypium raimondii HOM05D005307 ORTHO05D006695 3.1e-14 81.6 104 50.0
Atru.chr3.1814 Acer truncatum HOM05D005307 ORTHO05D006695 4.1e-14 81.3 103 49.5
Lalb_Chr07g0186791 Lupinus albus HOM05D005307 ORTHO05D006695 4.1e-14 81.3 98 51.0
EL10Ac3g07462 Beta vulgaris HOM05D005307 ORTHO05D006695 5.3e-14 80.9 98 50.0
CDE05G2932 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 5.3e-14 80.9 102 49.0
GSVIVG01001478001 Vitis vinifera HOM05D005307 ORTHO05D006695 5.3e-14 80.9 109 47.7
unitig_899.g14865 Utricularia gibba HOM05D005307 ORTHO05D006695 9.0e-14 80.1 105 47.6
TAR636G0868 Trochodendron aralioides HOM05D005307 ORTHO05D006695 1.2e-13 79.7 97 48.5
Eucgr.L00037 Eucalyptus grandis HOM05D005307 ORTHO05D006695 1.5e-13 79.3 98 50.0
Eucgr.H02691 Eucalyptus grandis HOM05D005307 ORTHO05D006695 2.0e-13 79.0 98 50.0
Gohir.A02G019700 Gossypium hirsutum HOM05D005307 ORTHO05D006695 2.6e-13 78.6 104 49.0
Oeu043443.2 Olea europaea HOM05D005307 ORTHO05D006695 2.6e-13 78.6 104 47.1
Oeu002923.1 Olea europaea HOM05D005307 ORTHO05D006695 3.4e-13 78.2 108 46.3
ATR0561G218 Amborella trichopoda HOM05D005307 ORTHO05D006695 4.5e-13 77.8 98 45.9
AUR62018565 Chenopodium quinoa HOM05D005307 ORTHO05D006695 4.5e-13 77.8 98 46.9
AUR62020854 Chenopodium quinoa HOM05D005307 ORTHO05D006695 4.5e-13 77.8 98 46.9
Lj4g0027601 Lotus japonicus HOM05D005307 ORTHO05D006695 4.5e-13 77.8 103 48.5
Pp3c24_4280 Physcomitrium patens HOM05D005307 ORTHO05D006695 4.5e-13 77.8 102 43.1
SEGI_03012 Sequoiadendron giganteum HOM05D005307 ORTHO05D006695 4.5e-13 77.8 102 43.1
Cc03_g08380 Coffea canephora HOM05D005307 ORTHO05D006695 7.7e-13 77.0 104 47.1
TAR365G0199 Trochodendron aralioides HOM05D005307 ORTHO05D006695 7.7e-13 77.0 102 48.0
PSO017G6801 Papaver somniferum HOM05D005307 ORTHO05D006695 1.0e-12 76.6 103 45.6
PSO063G4654 Papaver somniferum HOM05D005307 ORTHO05D006695 1.0e-12 76.6 103 45.6
Lalb_Chr12g0205581 Lupinus albus HOM05D005307 ORTHO05D006695 1.7e-12 75.9 98 48.0
Pp3c8_5960 Physcomitrium patens HOM05D005307 ORTHO05D006695 1.7e-12 75.9 102 42.2
Migut.G00755 Erythranthe guttata HOM05D005307 ORTHO05D006695 2.2e-12 75.5 105 47.6
SGA_v2.0_scaffold19G08778 Striga asiatica HOM05D005307 ORTHO05D006695 2.2e-12 75.5 104 47.1
SalBow8G0142 Salvia bowleyana HOM05D005307 ORTHO05D006695 2.9e-12 75.1 105 46.7
SalBow8G0791 Salvia bowleyana HOM05D005307 ORTHO05D006695 2.9e-12 75.1 105 46.7
MSTRG.4240 Avicennia marina HOM05D005307 ORTHO05D006695 3.8e-12 74.7 105 46.7
Gohir.D10G137900 Gossypium hirsutum HOM05D005307 ORTHO05D006695 1.9e-11 72.4 102 47.1
Gorai.011G153100 Gossypium raimondii HOM05D005307 ORTHO05D006695 2.5e-11 72.0 102 47.1
Cpa.g.sc83.41 Carica papaya HOM05D005307 ORTHO05D006695 3.2e-11 71.6 104 45.2
MBI07_g27653_MAGBIO Magnolia biondii HOM05D005307 ORTHO05D006695 1.6e-10 69.3 101 42.6
Zm00001eb127130 Zea mays HOM05D005307 ORTHO05D006695 7.9e-10 67.0 109 42.2
Os01g0101600 Oryza sativa ssp. japonica HOM05D005307 ORTHO05D006695 1.8e-09 65.9 117 40.2
Gohir.A10G128100 Gossypium hirsutum HOM05D005307 ORTHO05D006695 1.5e-08 62.8 96 46.9
Psat7g074720 Pisum sativum HOM05D005307 ORTHO05D006695 3.3e-08 61.6 100 45.0
BcaC09g51115 Brassica carinata HOM05D019998 ORTHO05D021590 1.1e-06 56.6 39 74.4
CBR_g48000 Chara braunii HOM05D005307 ORTHO05D006695 1.4e-06 56.2 96 37.5
C03p67510 Brassica napus HOM05D019998 ORTHO05D021590 1.8e-06 55.8 41 70.7
BolSC21t60274H Brassica oleracea HOM05D019998 ORTHO05D021590 1.8e-06 55.8 41 70.7
Zm00001eb334080 Zea mays HOM05D005307 ORTHO05D006695 1.8e-06 55.8 109 37.6
C01p16760 Brassica napus HOM05D019998 ORTHO05D021590 3.1e-06 55.1 41 70.7
BolC1t01620H Brassica oleracea HOM05D019998 ORTHO05D021590 3.1e-06 55.1 41 70.7
C01p39750 Brassica napus HOM05D005307 ORTHO05D006695 9.1e-06 53.5 35 74.3


User provided reference genes

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