Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p26690 Brassica napus HOM05D004976 ORTHO05D004851 2.7e-82 308.5 147 100.0
BraA06t23723Z Brassica rapa HOM05D004976 ORTHO05D004851 1.6e-66 256.1 144 84.0
A02p28410 Brassica napus HOM05D004976 ORTHO05D004851 2.5e-43 179.1 95 86.3
A09p37980 Brassica napus HOM05D004976 ORTHO05D004851 2.1e-34 149.4 135 54.1
A10p08070 Brassica napus HOM05D004976 ORTHO05D004851 2.1e-34 149.4 135 54.1
BolC1t02896H Brassica oleracea HOM05D004976 ORTHO05D004851 1.6e-29 133.3 145 44.8
BolC8t48401H Brassica oleracea HOM05D004976 ORTHO05D004851 1.5e-27 126.7 138 45.7
BraA01t00584Z Brassica rapa HOM05D004976 ORTHO05D004851 1.8e-25 119.8 62 91.9
BraA01t02778Z Brassica rapa HOM05D004976 ORTHO05D004851 1.5e-24 116.7 120 46.7
AT2G04420 Arabidopsis thaliana HOM05D004976 ORTHO05D004851 2.6e-24 115.9 142 43.0
AT2G33160 Arabidopsis thaliana HOM05D000037 ORTHO05D000150 4.4e-24 115.2 135 43.0
Sp7g06900 Schrenkiella parvula HOM05D004976 ORTHO05D004851 9.8e-24 114.0 148 38.5
AT1G27870 Arabidopsis thaliana HOM05D004976 ORTHO05D004851 1.7e-23 113.2 135 40.7
C05p50100 Brassica napus HOM05D004976 ORTHO05D004851 2.2e-23 112.8 94 53.2
BraA02t07436Z Brassica rapa HOM05D004976 ORTHO05D004851 8.3e-23 110.9 135 41.5
BolC9t59872H Brassica oleracea HOM05D001406 ORTHO05D002467 1.1e-22 110.5 99 48.5
AT3G25270 Arabidopsis thaliana HOM05D004976 ORTHO05D004851 1.8e-22 109.8 145 40.7
BolC5t29232H Brassica oleracea HOM05D004976 ORTHO05D004851 1.8e-22 109.8 98 50.0
AT1G04625 Arabidopsis thaliana HOM05D004976 ORTHO05D004851 7.0e-22 107.8 132 44.7
BolC2t08499H Brassica oleracea HOM05D004976 ORTHO05D004851 1.6e-21 106.7 147 38.1
CARHR043800 Cardamine hirsuta HOM05D004976 ORTHO05D004851 1.6e-21 106.7 98 53.1
BolC8t51211H Brassica oleracea HOM05D004976 ORTHO05D004851 5.9e-21 104.8 139 38.1
Thhalv10022287m.g Eutrema salsugineum HOM05D004976 ORTHO05D004851 5.9e-21 104.8 140 40.0
AT2G46460 Arabidopsis thaliana HOM05D004976 ORTHO05D004851 1.0e-20 104.0 95 52.6
Thhalv10009902m.g Eutrema salsugineum HOM05D004976 ORTHO05D004851 1.3e-20 103.6 129 41.9
BraA07t29876Z Brassica rapa HOM05D004976 ORTHO05D004851 5.0e-20 101.7 117 45.3
BolC7t43279H Brassica oleracea HOM05D004976 ORTHO05D004851 1.5e-19 100.1 117 41.9
BraA09t38437Z Brassica rapa HOM05D004976 ORTHO05D004851 2.5e-19 99.4 139 39.6
BraA09t38717Z Brassica rapa HOM05D004976 ORTHO05D004851 2.5e-19 99.4 137 37.2
BraA03t14020Z Brassica rapa HOM05D004976 ORTHO05D004851 3.3e-19 99.0 133 40.6
Sp5g16840 Schrenkiella parvula HOM05D004976 ORTHO05D004851 1.6e-18 96.7 127 40.2
AL8G15920 Arabidopsis lyrata HOM05D004976 ORTHO05D004851 2.8e-18 95.9 143 37.8
Sp6g11330 Schrenkiella parvula HOM05D004976 ORTHO05D004851 5.2e-17 91.7 95 45.3
BolC9t55739H Brassica oleracea HOM05D004976 ORTHO05D004851 6.8e-17 91.3 95 45.3
BcaB02g10660 Brassica carinata HOM05D000003 ORTHO05D000004 8.9e-17 90.9 147 35.4
BraA07t27820Z Brassica rapa HOM05D000207 ORTHO05D001673 1.5e-16 90.1 134 36.6
BraA08t35107Z Brassica rapa HOM05D004976 ORTHO05D004851 5.7e-16 88.2 82 47.6
Sp1g19240 Schrenkiella parvula HOM05D004976 ORTHO05D004851 1.7e-15 86.7 95 45.3
AT1G47497 Arabidopsis thaliana HOM05D004976 ORTHO05D004851 4.9e-15 85.1 74 54.1
Thhalv10019506m.g Eutrema salsugineum HOM05D004976 ORTHO05D004851 1.1e-14 84.0 142 34.5
AT5G65005 Arabidopsis thaliana HOM05D004976 ORTHO05D004851 2.4e-14 82.8 142 29.6
BraA07t29664Z Brassica rapa HOM05D004976 ORTHO05D004851 2.4e-14 82.8 105 40.0
BraA09t39138Z Brassica rapa HOM05D004976 ORTHO05D004851 7.0e-14 81.3 105 38.1
C05p45240 Brassica napus HOM05D004976 ORTHO05D004851 9.2e-14 80.9 100 38.0
C09p05940 Brassica napus HOM05D004976 ORTHO05D004851 5.9e-13 78.2 143 33.6
BolC9t53519H Brassica oleracea HOM05D004976 ORTHO05D004851 5.9e-13 78.2 143 33.6
Carub.0004s1022 Capsella rubella HOM05D004976 ORTHO05D004851 5.9e-13 78.2 87 41.4
AL1G41300 Arabidopsis lyrata HOM05D004976 ORTHO05D004851 2.9e-12 75.9 114 36.0
BcaNung01203 Brassica carinata HOM05D000003 ORTHO05D000004 6.6e-12 74.7 125 33.6
AL3G23800 Arabidopsis lyrata HOM05D004976 ORTHO05D004851 8.6e-12 74.3 61 52.5
Thhalv10002256m.g Eutrema salsugineum HOM05D004976 ORTHO05D004851 1.1e-11 73.9 96 36.5
BcaC01g02706 Brassica carinata HOM05D000003 ORTHO05D000004 1.9e-11 73.2 124 33.9
BolC9t56783H Brassica oleracea HOM05D004976 ORTHO05D004851 2.5e-11 72.8 72 41.7
Thhalv10003001m.g Eutrema salsugineum HOM05D004976 ORTHO05D004851 3.3e-11 72.4 142 28.9
Sp4g06100 Schrenkiella parvula HOM05D004976 ORTHO05D004851 7.3e-11 71.2 95 33.7
Aa31LG8G10880 Aethionema arabicum HOM05D000003 ORTHO05D000004 9.5e-11 70.9 144 26.4
BolC7t41689H Brassica oleracea HOM05D004976 ORTHO05D004851 9.5e-11 70.9 70 48.6
BcaB08g35528 Brassica carinata HOM05D004976 ORTHO05D004851 1.6e-10 70.1 102 34.3
Aa31LG9G1700 Aethionema arabicum HOM05D000003 ORTHO05D000004 3.6e-10 68.9 124 32.3
C08p26150 Brassica napus HOM05D004976 ORTHO05D004851 3.6e-10 68.9 69 46.4
AT3G32130 Arabidopsis thaliana HOM05D004976 ORTHO05D004851 1.0e-09 67.4 140 30.7
CARHR146840 Cardamine hirsuta HOM05D004976 ORTHO05D004851 1.0e-09 67.4 96 32.3
C05p41910 Brassica napus HOM05D004976 ORTHO05D004851 1.4e-09 67.0 90 40.0
BolC2t08873H Brassica oleracea HOM05D004976 ORTHO05D004851 1.8e-09 66.6 72 43.1
BolC5t31734H Brassica oleracea HOM05D004976 ORTHO05D004851 1.8e-09 66.6 72 43.1
Aa31LG9G1250 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.3e-09 66.2 142 31.7
CARHR217450 Cardamine hirsuta HOM05D004976 ORTHO05D004851 2.3e-09 66.2 118 33.9
BcaB01g00937 Brassica carinata HOM05D000003 ORTHO05D000004 3.1e-09 65.9 133 29.3
BolC6t38560H Brassica oleracea HOM05D004976 ORTHO05D004851 3.1e-09 65.9 72 43.1
AT1G52990 Arabidopsis thaliana HOM05D004976 ORTHO05D004851 4.0e-09 65.5 85 40.0
BcaB04g17741 Brassica carinata HOM05D000003 ORTHO05D004851 6.8e-09 64.7 113 31.0
BcaC06g36411 Brassica carinata HOM05D000496 ORTHO05D000411 1.2e-08 63.9 91 39.6
C02p49980 Brassica napus HOM05D004976 ORTHO05D004851 1.2e-08 63.9 85 40.0
CARHR183660 Cardamine hirsuta HOM05D004976 ORTHO05D004851 1.5e-08 63.5 70 37.1
AL3G31830 Arabidopsis lyrata HOM05D004976 ORTHO05D004851 2.6e-08 62.8 148 31.1
BcaC05g28305 Brassica carinata HOM05D000003 ORTHO05D001091 3.4e-08 62.4 129 32.6
BolC6t37512H Brassica oleracea HOM05D004976 ORTHO05D004851 5.8e-08 61.6 33 81.8
Aa31sc295G10 Aethionema arabicum HOM05D000003 ORTHO05D000004 9.8e-08 60.8 99 32.3
BcaC09g49873 Brassica carinata HOM05D000003 ORTHO05D000004 9.8e-08 60.8 79 35.4
BolC3t21482H Brassica oleracea HOM05D004976 ORTHO05D004851 9.8e-08 60.8 85 37.6
AT5G26617 Arabidopsis thaliana HOM05D004976 ORTHO05D004851 1.7e-07 60.1 96 32.3
CARHR123710 Cardamine hirsuta HOM05D004976 ORTHO05D004851 1.7e-07 60.1 65 47.7
BolC2t11077H Brassica oleracea HOM05D004976 ORTHO05D004851 2.2e-07 59.7 74 41.9
Prupe.2G133200 Prunus persica HOM05D027201 ORTHO05D008897 2.2e-07 59.7 91 30.8
Aa31LG4G10800 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.9e-07 59.3 127 29.1
AL2G19800 Arabidopsis lyrata HOM05D004976 ORTHO05D004851 2.9e-07 59.3 116 32.8
AT5G43755 Arabidopsis thaliana HOM05D004976 ORTHO05D004851 3.7e-07 58.9 72 37.5
BcaB01g00479 Brassica carinata HOM05D000003 ORTHO05D004851 6.4e-07 58.2 128 28.1
BcaC07g40765 Brassica carinata HOM05D000003 ORTHO05D000004 1.1e-06 57.4 126 26.2
LjContig00141g0020455 Lotus japonicus HOM05D000003 ORTHO05D000022 1.1e-06 57.4 88 37.5
PSO063G6867 Papaver somniferum HOM05D000003 ORTHO05D001026 1.1e-06 57.4 90 35.6
CARHR038370 Cardamine hirsuta HOM05D004976 ORTHO05D004851 1.4e-06 57.0 67 37.3
BolC8t48293H Brassica oleracea HOM05D004976 ORTHO05D004851 1.9e-06 56.6 79 36.7
CiPaw.11G082900 Carya illinoinensis HOM05D000003 ORTHO05D000004 1.9e-06 56.6 144 29.9
Aa31sc98G30 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.4e-06 56.2 135 28.9
Lj3g0002323 Lotus japonicus HOM05D000003 ORTHO05D007254 2.4e-06 56.2 96 33.3
Aa31LG10G9450 Aethionema arabicum HOM05D000003 ORTHO05D001091 3.2e-06 55.8 117 28.2
Aa31LG2G19820 Aethionema arabicum HOM05D000003 ORTHO05D000004 3.2e-06 55.8 120 31.7
BcaB06g27196 Brassica carinata HOM05D000003 ORTHO05D000004 5.4e-06 55.1 113 27.4
FAN08G0751 Fragaria x ananassa HOM05D009383 ORTHO05D011656 5.4e-06 55.1 96 33.3
TPR.G14611 Trifolium pratense HOM05D011238 ORTHO05D004093 5.4e-06 55.1 81 35.8
Lj5g0011892 Lotus japonicus HOM05D000003 ORTHO05D007254 7.0e-06 54.7 102 30.4
PSO210G0063 Papaver somniferum HOM05D003407 ORTHO05D001026 7.0e-06 54.7 85 36.5
Sp4g02030 Schrenkiella parvula HOM05D004976 ORTHO05D004851 7.0e-06 54.7 80 33.8
RcHm_v2.0_Chr1g0316991 Rosa chinensis HOM05D005989 ORTHO05D000022 9.2e-06 54.3 86 37.2


User provided reference genes

Program Settings